Carg25302 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25302
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 10459768 .. 10461852 (-)
RNA-Seq ExpressionCarg25302
SyntenyCarg25302
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAGTCGAACAATGGCCATTGGGCCACCGAGCTACGAACAGACCAGACCAAAATATGTGTTCGCCGGCCGCGCAATCCATAAACCTATTTTGGAATGAAGATACTTCGGACAGGGATGAGTAGAATACTCAATTCGAGCTTGGCATCTTCTGCATTTTGACGATCTTTTGGTATTACAACCTCTTGATTACTGTTCCTCCTTTTTTTCAGAATTATTCGTTCTTTTTTTTGTTCTAGATTCAATTTTATGCAGCATTTGTATTCATTATTCGATCCTATACACCGTGATACTGTTCCAGGTCCTGTGGCTATACGATTTGCTAGTTTTACCATTCAATGGTTTCTTATTCACGAATCCTTCGATTTAATTTTGGTAATCTGTCTGTCGTTGCTCGAGAATTTTTTATTTGTGAAATTGCAACGATCCATTTCGGTTCGGTTTTTTATTGATTTGGTTGAAAGTTCAGATGATCGTGGTGACTACGTTCGATAATTTTTGCTGTTATAGAGAGGTTCCAGCCCTAGCTGTATTTGTAGGAAGACGTATTCTGTTTTGACCTAATTTTTCTACTCAATTATTTCTCCAATAATTGGATTTCTTCAGGTGATGGAGAAGAACAATTTTAAATGAACAACAGATGAGGAAATGGCGGTTGCACTTTCTGCATTATACCGTCTGAATCTTCCCTATCTCCATGGATGCGTCCGAGGTGCTAAACTACCTAATACTTCAAAGAAACATAACTAAATAGCTACTGAAACATCAAGAGCAAACTTGTTTATTCCATTGTTCTGTTTTGACTCATGAAGCTTGACAAGAAGCTTTTGACGAAATACTTGATGGAGAATCCTCATGACAATCTTCCATATGTTGCTGATGAGGTACCAAACCTTCTTAGTCTTTATTAGTTTAATACAAGAGGTGATCCGGAAATGAGGCTATGGCTAATTGCTTAATTCCATTGACCCATTTCTTTGGAGTATGCTTTTCTTCTGTTACAAATTGGCACAAGGCATATTAAGAAACGTAGCTTGAGAAAATGATGGCTTTAGCTCCCATTCTTCAGCACTTCGTTCAACAACTAGTCATATCACGTTCTTCTTTTGTAAACTATATGTTCATTGTGATTTGCAGGAGGACAAGGATGCTAGTAATGAGCGTATCCATTCACATCATCATCATCGTCGATCATTAAAAGTAAGTATAGATATACAAAAATTCATCCGTTAAACTCCTTTCGATATATTATTACAGATACAAATCTAGTACAGATGTAGCATCGATATATTATTACAGATACAAATCTAGTACAGATGTAGCATTGATTGTAGCATAGGTTAGCTTGCTTTGGAGCTTCGAGTCCTCATTCTTGATGTTATGTATGGTGTTCGTTACTCGTGGCTTACATTCCCATGTCTCTCAAAACTTACGTCTCTCGAAACTTACGTCTCTCGAAACTTACAGTAGGTCAAAACTTACAGTAAAGGAGGTGACCCATTTGTTTGGAGTATGCTTTTCTTTTGTTATAAATTAGCATAAGGCATATTAAGAAACGTAGCTTGAGAAAATGATGGCTTTAGCTCCCATTCACCAACCAGTCATATCACATTCTTCTTTTGTAAACTATATGTTCGTTGTGATTTACAGTAGGACAAGGATGCTGGTAATGAATGTATCTATTCACATTACAATCATCATCGATCATTGAAAGTAAGTATAGATATACAAAAGATTATCCTTCGAACTCATTTTGACATTATTACAAATATAAATCCAGTATACATATTGCATTGATTGTATAGCATAGGTTAGCTTGCATTGTAACTTCTGGCCCTCATTCTCAATGCTATTTATGGTGTTCGTTACTCGTGGCTTACATTCCCACATCTCTCAAAACTTTCAGGTAAAGGAGGTGATTAATTTCCTTCTATATATTGATGAAGCAGGGGAAGGCTACAAAACAGCTGCTTACACAAAACCTTATTCCTTTTTCGACTTGCGAATGCTTATATTCCTGCCTCACAGAGGCGATCATGAATCACGAATGAATAAGCCATTGTTGATTGATATTCATATTCATTAA

mRNA sequence

TTTAGTCGAACAATGGCCATTGGGCCACCGAGCTACGAACAGACCAGACCAAAATATGTGTTCGCCGGCCGCGCAATCCATAAACCTATTTTGGAATGAAGATACTTCGGACAGGGATGAGTAGAATACTCAATTCGAGCTTGGCATCTTCTGCATTTTGACGATCTTTTGGTGATGGAGAAGAACAATTTTAAATGAACAACAGATGAGGAAATGGCGGTTGCACTTTCTGCATTATACCGTCTGAATCTTCCCTATCTCCATGGATGCGTCCGAGCTTGACAAGAAGCTTTTGACGAAATACTTGATGGAGAATCCTCATGACAATCTTCCATATGTTGCTGATGAGGAGGACAAGGATGCTAGTAATGAGCGTATCCATTCACATCATCATCATCGTCGATCATTAAAAGACAAGGATGCTGGTAATGAATGTATCTATTCACATTACAATCATCATCGATCATTGAAAGTAAAGGAGGTGATTAATTTCCTTCTATATATTGATGAAGCAGGGGAAGGCTACAAAACAGCTGCTTACACAAAACCTTATTCCTTTTTCGACTTGCGAATGCTTATATTCCTGCCTCACAGAGGCGATCATGAATCACGAATGAATAAGCCATTGTTGATTGATATTCATATTCATTAA

Coding sequence (CDS)

ATGGATGCGTCCGAGCTTGACAAGAAGCTTTTGACGAAATACTTGATGGAGAATCCTCATGACAATCTTCCATATGTTGCTGATGAGGAGGACAAGGATGCTAGTAATGAGCGTATCCATTCACATCATCATCATCGTCGATCATTAAAAGACAAGGATGCTGGTAATGAATGTATCTATTCACATTACAATCATCATCGATCATTGAAAGTAAAGGAGGTGATTAATTTCCTTCTATATATTGATGAAGCAGGGGAAGGCTACAAAACAGCTGCTTACACAAAACCTTATTCCTTTTTCGACTTGCGAATGCTTATATTCCTGCCTCACAGAGGCGATCATGAATCACGAATGAATAAGCCATTGTTGATTGATATTCATATTCATTAA

Protein sequence

MDASELDKKLLTKYLMENPHDNLPYVADEEDKDASNERIHSHHHHRRSLKDKDAGNECIYSHYNHHRSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFDLRMLIFLPHRGDHESRMNKPLLIDIHIH
Homology
BLAST of Carg25302 vs. NCBI nr
Match: KAG7022616.1 (hypothetical protein SDJN02_16350 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.2 bits (687), Expect = 1.8e-68
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query: 1   MDASELDKKLLTKYLMENPHDNLPYVADEEDKDASNERIHSHHHHRRSLKDKDAGNECIY 60
           MDASELDKKLLTKYLMENPHDNLPYVADEEDKDASNERIHSHHHHRRSLKDKDAGNECIY
Sbjct: 1   MDASELDKKLLTKYLMENPHDNLPYVADEEDKDASNERIHSHHHHRRSLKDKDAGNECIY 60

Query: 61  SHYNHHRSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFDLRMLIFLPHRGDHESRMNK 120
           SHYNHHRSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFDLRMLIFLPHRGDHESRMNK
Sbjct: 61  SHYNHHRSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFDLRMLIFLPHRGDHESRMNK 120

Query: 121 PLLIDIHIH 130
           PLLIDIHIH
Sbjct: 121 PLLIDIHIH 129

BLAST of Carg25302 vs. NCBI nr
Match: KAG6588858.1 (hypothetical protein SDJN03_17423, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 214.5 bits (545), Expect = 5.2e-52
Identity = 109/129 (84.50%), Postives = 109/129 (84.50%), Query Frame = 0

Query: 1   MDASELDKKLLTKYLMENPHDNLPYVADEEDKDASNERIHSHHHHRRSLKDKDAGNECIY 60
           MDASELDKKLLTKYLMENPHDNLPYVADEEDKDASNERIHSHHHHR              
Sbjct: 1   MDASELDKKLLTKYLMENPHDNLPYVADEEDKDASNERIHSHHHHR-------------- 60

Query: 61  SHYNHHRSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFDLRMLIFLPHRGDHESRMNK 120
                 RSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFDLRMLIFLPHRGDHESRMNK
Sbjct: 61  ------RSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFDLRMLIFLPHRGDHESRMNK 109

Query: 121 PLLIDIHIH 130
           PLLIDIHIH
Sbjct: 121 PLLIDIHIH 109

BLAST of Carg25302 vs. NCBI nr
Match: XP_022928416.1 (uncharacterized protein LOC111435236 isoform X2 [Cucurbita moschata])

HSP 1 Score: 207.2 bits (526), Expect = 8.4e-50
Identity = 106/129 (82.17%), Postives = 106/129 (82.17%), Query Frame = 0

Query: 1   MDASELDKKLLTKYLMENPHDNLPYVADEEDKDASNERIHSHHHHRRSLKDKDAGNECIY 60
           MDASELDKKLLTKYLMENPHDNLPY ADEEDKDASNERIHSHHHHR              
Sbjct: 1   MDASELDKKLLTKYLMENPHDNLPYFADEEDKDASNERIHSHHHHR-------------- 60

Query: 61  SHYNHHRSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFDLRMLIFLPHRGDHESRMNK 120
                 RSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFD RMLIFL HRGDHESRMNK
Sbjct: 61  ------RSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFDSRMLIFLTHRGDHESRMNK 109

Query: 121 PLLIDIHIH 130
           PLLIDIHIH
Sbjct: 121 PLLIDIHIH 109

BLAST of Carg25302 vs. NCBI nr
Match: XP_022928415.1 (uncharacterized protein LOC111435236 isoform X1 [Cucurbita moschata])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-25
Identity = 70/110 (63.64%), Postives = 76/110 (69.09%), Query Frame = 0

Query: 27  ADEEDKDASNERIHSHHHHRRSLK-------DKDAGNECIYSHYNHHRSLKVKEVINFLL 86
           A EEDKDASNERIHSHHHHRRSLK       +      C+        S   + ++  L 
Sbjct: 3   ASEEDKDASNERIHSHHHHRRSLKVSLLWSFESSFLMLCMVFVTRGLHSHVSQNLLTSLE 62

Query: 87  YIDEAGEGYKTAAYTKPYSFFDLRMLIFLPHRGDHESRMNKPLLIDIHIH 130
              +AGEGYKTAAYTKPYSFFD RMLIFL HRGDHESRMNKPLLIDIHIH
Sbjct: 63  TYSKAGEGYKTAAYTKPYSFFDSRMLIFLTHRGDHESRMNKPLLIDIHIH 112

BLAST of Carg25302 vs. NCBI nr
Match: XP_022989740.1 (uncharacterized protein LOC111486736 isoform X1 [Cucurbita maxima])

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-20
Identity = 63/115 (54.78%), Postives = 73/115 (63.48%), Query Frame = 0

Query: 1   MDASELDKKLLTKYLMENPHDNLPYVADEEDKDASNERIHSHHHHRRSLKDKDAGN---- 60
           MDAS+LDKKLLTKYLMENPHDNLPY AD EDKDASNERIHSHHHH RSLK     +    
Sbjct: 1   MDASKLDKKLLTKYLMENPHDNLPYFADNEDKDASNERIHSHHHHGRSLKVSLLCSFESS 60

Query: 61  ----------ECIYSHYNHHRSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFD 102
                       ++SH + +    ++          + G+GYKTAAYTKP SFFD
Sbjct: 61  FLMLFMVFVTRGLHSHVSQNLPTSLET-------CSKEGKGYKTAAYTKPCSFFD 108

BLAST of Carg25302 vs. ExPASy TrEMBL
Match: A0A6J1EK87 (uncharacterized protein LOC111435236 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435236 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.0e-50
Identity = 106/129 (82.17%), Postives = 106/129 (82.17%), Query Frame = 0

Query: 1   MDASELDKKLLTKYLMENPHDNLPYVADEEDKDASNERIHSHHHHRRSLKDKDAGNECIY 60
           MDASELDKKLLTKYLMENPHDNLPY ADEEDKDASNERIHSHHHHR              
Sbjct: 1   MDASELDKKLLTKYLMENPHDNLPYFADEEDKDASNERIHSHHHHR-------------- 60

Query: 61  SHYNHHRSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFDLRMLIFLPHRGDHESRMNK 120
                 RSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFD RMLIFL HRGDHESRMNK
Sbjct: 61  ------RSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFDSRMLIFLTHRGDHESRMNK 109

Query: 121 PLLIDIHIH 130
           PLLIDIHIH
Sbjct: 121 PLLIDIHIH 109

BLAST of Carg25302 vs. ExPASy TrEMBL
Match: A0A6J1ERM0 (uncharacterized protein LOC111435236 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435236 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.9e-26
Identity = 70/110 (63.64%), Postives = 76/110 (69.09%), Query Frame = 0

Query: 27  ADEEDKDASNERIHSHHHHRRSLK-------DKDAGNECIYSHYNHHRSLKVKEVINFLL 86
           A EEDKDASNERIHSHHHHRRSLK       +      C+        S   + ++  L 
Sbjct: 3   ASEEDKDASNERIHSHHHHRRSLKVSLLWSFESSFLMLCMVFVTRGLHSHVSQNLLTSLE 62

Query: 87  YIDEAGEGYKTAAYTKPYSFFDLRMLIFLPHRGDHESRMNKPLLIDIHIH 130
              +AGEGYKTAAYTKPYSFFD RMLIFL HRGDHESRMNKPLLIDIHIH
Sbjct: 63  TYSKAGEGYKTAAYTKPYSFFDSRMLIFLTHRGDHESRMNKPLLIDIHIH 112

BLAST of Carg25302 vs. ExPASy TrEMBL
Match: A0A6J1JN79 (uncharacterized protein LOC111486736 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486736 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 63/115 (54.78%), Postives = 73/115 (63.48%), Query Frame = 0

Query: 1   MDASELDKKLLTKYLMENPHDNLPYVADEEDKDASNERIHSHHHHRRSLKDKDAGN---- 60
           MDAS+LDKKLLTKYLMENPHDNLPY AD EDKDASNERIHSHHHH RSLK     +    
Sbjct: 1   MDASKLDKKLLTKYLMENPHDNLPYFADNEDKDASNERIHSHHHHGRSLKVSLLCSFESS 60

Query: 61  ----------ECIYSHYNHHRSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFD 102
                       ++SH + +    ++          + G+GYKTAAYTKP SFFD
Sbjct: 61  FLMLFMVFVTRGLHSHVSQNLPTSLET-------CSKEGKGYKTAAYTKPCSFFD 108

BLAST of Carg25302 vs. ExPASy TrEMBL
Match: A0A6J1JN84 (uncharacterized protein LOC111486736 isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111486736 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.8e-19
Identity = 62/116 (53.45%), Postives = 70/116 (60.34%), Query Frame = 0

Query: 1   MDASELDKKLLTKYLMENPHDNLPYVADEEDKDASNERIHSHHHHRRSLKDKDAGNECIY 60
           MDAS+LDKKLLTKYLMENPHDNLPY AD EDKDASNERIHSHHHH RSLK K        
Sbjct: 1   MDASKLDKKLLTKYLMENPHDNLPYFADNEDKDASNERIHSHHHHGRSLKGKAT------ 60

Query: 61  SHYNHHRSLKVKEVINFLLYIDEAGEGYKTAAYTKPYSFFDLRMLIFLPHRGDHES 117
                 + L  + ++ F            T A       +  +MLIFL HRG+HES
Sbjct: 61  ------KQLLTQNLVPF-----------STRA-----MMWSEQMLIFLTHRGNHES 88

BLAST of Carg25302 vs. ExPASy TrEMBL
Match: A0A6J1JR84 (uncharacterized protein LOC111486736 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111486736 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 8.2e-19
Identity = 63/117 (53.85%), Postives = 73/117 (62.39%), Query Frame = 0

Query: 1   MDASELDKKLLTKYLMENPHDNLPYVADEEDKDASNERIHSHHHHRRSLKDKDAGNECIY 60
           MDAS+LDKKLLTKYLMENPHDNLPY AD EDKDASNERIHSHHHH RSLK K      I 
Sbjct: 1   MDASKLDKKLLTKYLMENPHDNLPYFADNEDKDASNERIHSHHHHGRSLKVK----VLII 60

Query: 61  SHYNHHRSLK-VKEVINFLLYIDEAGEGYKTAAYTKPYSFFDLRMLIFLPHRGDHES 117
           S Y   +  K  K+++                 ++     +  +MLIFL HRG+HES
Sbjct: 61  SFYILMKQGKATKQLLT-----------QNLVPFSTRAMMWSEQMLIFLTHRGNHES 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7022616.11.8e-68100.00hypothetical protein SDJN02_16350 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6588858.15.2e-5284.50hypothetical protein SDJN03_17423, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022928416.18.4e-5082.17uncharacterized protein LOC111435236 isoform X2 [Cucurbita moschata][more]
XP_022928415.11.4e-2563.64uncharacterized protein LOC111435236 isoform X1 [Cucurbita moschata][more]
XP_022989740.11.4e-2054.78uncharacterized protein LOC111486736 isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EK874.0e-5082.17uncharacterized protein LOC111435236 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1ERM06.9e-2663.64uncharacterized protein LOC111435236 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JN796.7e-2154.78uncharacterized protein LOC111486736 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JN844.8e-1953.45uncharacterized protein LOC111486736 isoform X5 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JR848.2e-1953.85uncharacterized protein LOC111486736 isoform X3 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25302-RACarg25302-RAmRNA