Carg25294 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25294
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	light-regulated protein-like
Location	Carg_Chr11: 10519712 .. 10520786 (+)
RNA-Seq Expression	Carg25294
Synteny	Carg25294

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGAGACAGGGTGTAACAAACTATACTCGAATTGACTCTTATGCTCGGGTTCGAGACAGGGTGTAACAAACTATACTCAAATTGACCCATATGCTCGAGTTCGAGTTAGGGTGTAATAAACTATGCTCGAATTGACTCGTATGCTCGAGTTCAAGTTAGGTTATAATAAATTATGCTCGAATTGACCTGTATACTTGGGTTCGAGACGGGGTGTTTCCTGCAGAAGCATGTGAGACCATTGGTGGAGAAGCTTGCTGGGCCAACATTTTCCCAGAAGTGAGGCTTCAGGCTTCTGCAGATAGCGATGAAGCAGCCGCAGTTGCCTTGGAAGAGATTGATAGAGAGTATCTTCATTATGCTGCCCAGTCTAAGACGTGAGATAATTTATTTTCTTTAATTTCCTTCTATTTTTAATTCTTTTTAATATTATAATTTCACTCCAAAATTTTAATTTCTTAGATTTTTTTTATTTCCTAAATTTGAAAAATTTTATAATATATATTTAAAAAATAACTTCAAAAATTCTACTTCTAAATAAAAAATACAGAAAATTTAAAAATATTCTTAAGAATTTAATATTAATAATGTTTAAAAACTTATTAATTAAAATCGTATTGGGACTATATACCAAAATAAGTATCTTTTTAATTTTTTAGTTATTAATAAAATTTTAAATGTTCGAAAAATTTTTTTAAAACAAATATTAATAATTTCGGTTATATAGAATACTATTAGAATTAAAGGATATTATTGAATCTTTTTTTAAAATAATTTTTAAATAAAATGTAAAGTTTTAAGAATAATTTTATTAATTTAACCTTATATATATATTTGGAGATTTCTCCCCAGAAGCTGCATGTTTAACTCTCTCAAAACACTTGAAAATCTGTGCCCTGCCTTGGAGTTTGGAGTAATTTATTTATTAATATTATTATTATTATTTATTAATATTATTATTATATTATTATTATTTATTAATATTATTATTATTATGTGCAGAGTTTTTCCCGGGGAGGCTTGCGATGATCTTGGTGGAGAATTTTGTGGAGCCGAGTTTCTAAATGGCATTTTCTAA

mRNA sequence

TCGAGACAGGGTGTAACAAACTATACTCGAATTGACTCTTATGCTCGGGTTATAATAAATTATGCTCGAATTGACCTGTATACTTGGGTTCGAGACGGGGTGTTTCCTGCAGAAGCATGTGAGACCATTGGTGGAGAAGCTTGCTGGGCCAACATTTTCCCAGAAGTGAGGCTTCAGGCTTCTGCAGATAGCGATGAAGCAGCCGCAGTTGCCTTGGAAGAGATTGATAGAGAGTATCTTCATTATGCTGCCCAGTCTAAGACAGTTTTTCCCGGGGAGGCTTGCGATGATCTTGGTGGAGAATTTTGTGGAGCCGAGTTTCTAAATGGCATTTTCTAA

Coding sequence (CDS)

TCGAGACAGGGTGTAACAAACTATACTCGAATTGACTCTTATGCTCGGGTTATAATAAATTATGCTCGAATTGACCTGTATACTTGGGTTCGAGACGGGGTGTTTCCTGCAGAAGCATGTGAGACCATTGGTGGAGAAGCTTGCTGGGCCAACATTTTCCCAGAAGTGAGGCTTCAGGCTTCTGCAGATAGCGATGAAGCAGCCGCAGTTGCCTTGGAAGAGATTGATAGAGAGTATCTTCATTATGCTGCCCAGTCTAAGACAGTTTTTCCCGGGGAGGCTTGCGATGATCTTGGTGGAGAATTTTGTGGAGCCGAGTTTCTAAATGGCATTTTCTAA

Protein sequence

SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF

Homology

[Close]

BLAST of Carg25294 vs. NCBI nr
Match: KAG7022624.1 (Light-regulated protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234.6 bits (597), Expect = 4.2e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQA 60
           SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQA
Sbjct: 1   SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQA 60

Query: 61  SADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF 113
           SADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF
Sbjct: 61  SADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF 112

[Close]

BLAST of Carg25294 vs. NCBI nr
Match: KAG6588864.1 (Light-regulated protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.8 bits (512), Expect = 3.0e-48
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 9   TRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAA 68
           T +  Y+ VIINYARIDLYT VRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAA
Sbjct: 66  TSVVDYSSVIINYARIDLYTRVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAA 125

Query: 69  AVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF 113
           AVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF
Sbjct: 126 AVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF 169

[Close]

BLAST of Carg25294 vs. NCBI nr
Match: XP_022928578.1 (light-regulated protein-like [Cucurbita moschata])

HSP 1 Score: 164.1 bits (414), Expect = 7.0e-37
Identity = 81/112 (72.32%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQA 60
           SR+         +Y   +++Y+ +         VFPAEACETIGGEACWANIFPEVRLQA
Sbjct: 38  SRRSTIKAVTAVAYDTSVVDYSSV-------ISVFPAEACETIGGEACWANIFPEVRLQA 97

Query: 61  SADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF 113
           SADSDEAAAVALEEIDREYL YAAQSKTVFPGEACDDLGGEFCGAEFLNG+F
Sbjct: 98  SADSDEAAAVALEEIDREYLDYAAQSKTVFPGEACDDLGGEFCGAEFLNGVF 142

[Close]

BLAST of Carg25294 vs. NCBI nr
Match: XP_023531712.1 (light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.0 bits (406), Expect = 6.0e-36
Identity = 80/112 (71.43%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQA 60
           SR+         +Y   +++Y+ +         VFPAEACETIGGEACWANIFPEVRLQA
Sbjct: 37  SRRSTIKAVTAVAYDTSVVDYSSV-------ISVFPAEACETIGGEACWANIFPEVRLQA 96

Query: 61  SADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF 113
           SADS EAAAVALEEIDREYL YAAQSKTVFPGEACDDLGGEFCGAEFLNG+F
Sbjct: 97  SADSAEAAAVALEEIDREYLDYAAQSKTVFPGEACDDLGGEFCGAEFLNGVF 141

[Close]

BLAST of Carg25294 vs. NCBI nr
Match: XP_016900821.1 (PREDICTED: light-regulated protein isoform X3 [Cucumis melo] >XP_016900822.1 PREDICTED: light-regulated protein isoform X3 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 6.6e-27
Identity = 69/104 (66.35%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 11  IDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEA-CWANIFPEVRLQASADSDEAAA 70
           I + A V+ + + +D  + +   VFPAEACETIGGEA CWAN+FPEVRLQ S ++++  A
Sbjct: 55  IKATASVVYDTSVVDYSSAI--SVFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPA 114

Query: 71  VA-LEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF 113
           VA LEEIDREYL YAA SKTVF GEACDDLGGEFC AEFLNG+F
Sbjct: 115 VANLEEIDREYLDYAADSKTVFRGEACDDLGGEFCEAEFLNGVF 156

[Close]

BLAST of Carg25294 vs. ExPASy Swiss-Prot
Match: Q03200 (Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-15
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 15  ARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEE 74
           A V +  A +D  + +   VFP EAC+ IGGEAC   ++PE +L +SA +   +  A EE
Sbjct: 41  AAVAVEAAEVDYSSNI--SVFPMEACDLIGGEACNVQMYPEAKLSSSA-AVAVSRAAAEE 100

Query: 75  IDREYLHYAAQSKTVFPGEACDDLGGEFCGA 106
           +DR+YL Y  +  TVFP EACDDLGGEFC A
Sbjct: 101 VDRDYLSY-DEPTTVFPEEACDDLGGEFCKA 127

[Close]

BLAST of Carg25294 vs. ExPASy Swiss-Prot
Match: Q96500 (Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.0e-14
Identity = 43/74 (58.11%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 34  VFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGE 93
           VFPAEACE I G AC A+I+PEV+L     S     VA E +DREY  Y +  KTVF  E
Sbjct: 67  VFPAEACEVISGYACSADIYPEVKLDTKPVS---RPVASEPVDREYEEYNS-PKTVFREE 126

Query: 94  ACDDLGGEFCGAEF 108
           ACDDLGGEFC  +F
Sbjct: 127 ACDDLGGEFCEPDF 136

[Close]

BLAST of Carg25294 vs. ExPASy TrEMBL
Match: A0A6J1EPG4 (light-regulated protein-like OS=Cucurbita moschata OX=3662 GN=LOC111435343 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.4e-37
Identity = 81/112 (72.32%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQA 60
           SR+         +Y   +++Y+ +         VFPAEACETIGGEACWANIFPEVRLQA
Sbjct: 38  SRRSTIKAVTAVAYDTSVVDYSSV-------ISVFPAEACETIGGEACWANIFPEVRLQA 97

Query: 61  SADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF 113
           SADSDEAAAVALEEIDREYL YAAQSKTVFPGEACDDLGGEFCGAEFLNG+F
Sbjct: 98  SADSDEAAAVALEEIDREYLDYAAQSKTVFPGEACDDLGGEFCGAEFLNGVF 142

[Close]

BLAST of Carg25294 vs. ExPASy TrEMBL
Match: A0A1S4DXW1 (light-regulated protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.2e-27
Identity = 69/104 (66.35%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 11  IDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEA-CWANIFPEVRLQASADSDEAAA 70
           I + A V+ + + +D  + +   VFPAEACETIGGEA CWAN+FPEVRLQ S ++++  A
Sbjct: 55  IKATASVVYDTSVVDYSSAI--SVFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPA 114

Query: 71  VA-LEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF 113
           VA LEEIDREYL YAA SKTVF GEACDDLGGEFC AEFLNG+F
Sbjct: 115 VANLEEIDREYLDYAADSKTVFRGEACDDLGGEFCEAEFLNGVF 156

[Close]

BLAST of Carg25294 vs. ExPASy TrEMBL
Match: A0A5A7VMP8 (Light-regulated protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00270 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.2e-27
Identity = 69/104 (66.35%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 11  IDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEA-CWANIFPEVRLQASADSDEAAA 70
           I + A V+ + + +D  + +   VFPAEACETIGGEA CWAN+FPEVRLQ S ++++  A
Sbjct: 42  IKATASVVYDTSVVDYSSAI--SVFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPA 101

Query: 71  VA-LEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF 113
           VA LEEIDREYL YAA SKTVF GEACDDLGGEFC AEFLNG+F
Sbjct: 102 VANLEEIDREYLDYAADSKTVFRGEACDDLGGEFCEAEFLNGVF 143

[Close]

BLAST of Carg25294 vs. ExPASy TrEMBL
Match: A0A1S3BND3 (light-regulated protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.2e-27
Identity = 69/104 (66.35%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 11  IDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEA-CWANIFPEVRLQASADSDEAAA 70
           I + A V+ + + +D  + +   VFPAEACETIGGEA CWAN+FPEVRLQ S ++++  A
Sbjct: 61  IKATASVVYDTSVVDYSSAI--SVFPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPA 120

Query: 71  VA-LEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF 113
           VA LEEIDREYL YAA SKTVF GEACDDLGGEFC AEFLNG+F
Sbjct: 121 VANLEEIDREYLDYAADSKTVFRGEACDDLGGEFCEAEFLNGVF 162

[Close]

BLAST of Carg25294 vs. ExPASy TrEMBL
Match: A0A0A0L8G9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G598910 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.6e-24
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 11  IDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEAC-WANIFPEVRLQASADSDEAAA 70
           I + A V+ + + +D  + +   VFPAEACETIGGEAC W N+FPEVRLQ ++ +++   
Sbjct: 58  IKATASVVYDTSVVDYSSAI--SVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPV 117

Query: 71  VALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNGIF 113
            + EEIDREYL Y A SKTVFPGEACDDLGGEFC  EFLNG+F
Sbjct: 118 ASSEEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF 157

[Close]

BLAST of Carg25294 vs. TAIR 10
Match: AT3G26740.1 (CCR-like )

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-15
Identity = 43/74 (58.11%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 34  VFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGE 93
           VFPAEACE I G AC A+I+PEV+L     S     VA E +DREY  Y +  KTVF  E
Sbjct: 67  VFPAEACEVISGYACSADIYPEVKLDTKPVS---RPVASEPVDREYEEYNS-PKTVFREE 126

Query: 94  ACDDLGGEFCGAEF 108
           ACDDLGGEFC  +F
Sbjct: 127 ACDDLGGEFCEPDF 136

The following BLAST results are available for this feature:

BLAST of Carg25294 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022624.1	4.2e-58	100.00	Light-regulated protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6588864.1	3.0e-48	93.27	Light-regulated protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_022928578.1	7.0e-37	72.32	light-regulated protein-like [Cucurbita moschata]	[more]
XP_023531712.1	6.0e-36	71.43	light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_016900821.1	6.6e-27	66.35	PREDICTED: light-regulated protein isoform X3 [Cucumis melo] >XP_016900822.1 PRE...	[more]

BLAST of Carg25294 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q03200	1.2e-15	49.45	Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q96500	3.0e-14	58.11	Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1...	[more]

BLAST of Carg25294 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EPG4	3.4e-37	72.32	light-regulated protein-like OS=Cucurbita moschata OX=3662 GN=LOC111435343 PE=4 ...	[more]
A0A1S4DXW1	3.2e-27	66.35	light-regulated protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 ...	[more]
A0A5A7VMP8	3.2e-27	66.35	Light-regulated protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BND3	3.2e-27	66.35	light-regulated protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 ...	[more]
A0A0A0L8G9	5.6e-24	60.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G598910 PE=4 SV=1	[more]

BLAST of Carg25294 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26740.1	2.1e-15	58.11	CCR-like	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009856	Light regulated Lir1	PFAM	PF07207	Lir1	coord: 10..104 e-value: 6.8E-33 score: 113.8
IPR009856	Light regulated Lir1	PANTHER	PTHR36762	LIGHT-REGULATED PROTEIN 1, CHLOROPLASTIC	coord: 15..112
None	No IPR available	PANTHER	PTHR36762:SF3	LIGHT-REGULATED PROTEIN	coord: 15..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25294-RA	Carg25294-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast