Carg25260 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25260
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionC2H2-type domain-containing protein
LocationCarg_Chr04: 17000903 .. 17002482 (+)
RNA-Seq ExpressionCarg25260
SyntenyCarg25260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTACAGCTTCTTCTTCTGGTGGTTCTCCACCTCCTCCACCCAATTCTGACCATGGGGTCACCAGTAAAAGAAAGAGAAGACCAGCAGGAACCCCAGGTAAATTTTAACCAAATTTAACCCATTTAACTCATTTTCAATCCAAAGTTTGAATCTTTTTCAATTTTTATCCATACCCATCTCATAAAAATTCAAACTTGAATTCACTTTTGTGTTGTTGCATTAGATCCAGATGCTGAAGTGGTTTCCTTATCGCCAAAAACCCTTTTGGAATCGGATCGGTATGTTTGTGAAATATGCAACCAAGGGTTCCAAAGGGATCAGAATCTTCAAATGCACCGCCGCCGCCACAAGGTGCCGTGGAAGCTACTCAAGAGAGCGGAGACGGCGGAGGCAGTCAAGAAAAAGGTGTTCGTTTGTCCTGAACCCACTTGTCTCCACCATGACCCTCGCCATGCCCTTGGTGACCTCGTCGGTATCAAAAAACACTTCCGGAGAAAGCATAGCAATCAAAAGCATTGGGTTTGTGACAAATGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCATCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGCCGTGTCTTTTCTAGGTCCTCTCTCTCTCTCTCTAACTTTTCAATTTTATAGTTCGTGTTCATAGATATTTGAACCCGAGTATTCGAGAAAAAGCAGAATAACGAGTTCGACCTAATTTAGCATTACGAATTTCTCGAATTTTGCATATGATATTGTCCATTTTAATCTTAAATTCAATACCCGCTTCCCAATTTTTAACTTTTCGATATAAAATTATCGACTACATTCTTTTAGCTTCGACTTTCGTTTTTCGAGGCTTTGGATAACTTGATATGGAAGAAATAAGGTAATGTTTAGGTTGAATTGTATTGATAACTAATATTACATAGTATTTTTCAGAGTGGAGAGCTTCATAGAACACCAAGATGCTTGTAATCTCCGGCAGCTGAGGTCCGATGCACCGCCGCCGTTGCTACCACCGCCATTACTACAACCCTACTCACGATCGATTTCTTACACCGGTGCCTCGACCAGCAACGATCATAGCTTTCAAATGGCTACACCATTACGAGGGTTTCCAATTTTATCATCGAACTTAGATCGAAACATCAACATTAATTTTCCGAATCACCATGATCTCGAGCTTCATCTTTCATCTCCAAGCTCGGCGTTTCTTAAACTCTCAATTGGGTCAAACAAGGAGGCGAAGGAAGAGCGTCAGCTCGATTTGGCGATCGCCGAGAAAGCTTACGCAGAAGAAGCACGACGAGAGGCGAAACGACAGATCGAGATCGCCGAGGTCGAGTTCGCAAATGCAAAAATGATACGACAACAAGCTCAAGCAGAGTTGGAAAAAGCTAGGATCTTGAAGGAAGAAGCCACAAGGAAAATGAGCTCCACAATTATGGAAATCACTTGCCAAACTTGTCGGCTACACTTCCATATGAGCTCCGTTACACCGGAGGAGACCTCATTGGCCATTAGCTACATGTCATCCGCTACAACAGAAGGTGATGGAGAGTGA

mRNA sequence

GCTACAGCTTCTTCTTCTGGTGGTTCTCCACCTCCTCCACCCAATTCTGACCATGGGGTCACCAGTAAAAGAAAGAGAAGACCAGCAGGAACCCCAGTATTTTTCAGAGTGGAGAGCTTCATAGAACACCAAGATGCTTGTAATCTCCGGCAGCTGAGGTCCGATGCACCGCCGCCGTTGCTACCACCGCCATTACTACAACCCTACTCACGATCGATTTCTTACACCGGTGCCTCGACCAGCAACGATCATAGCTTTCAAATGGCTACACCATTACGAGGGTTTCCAATTTTATCATCGAACTTAGATCGAAACATCAACATTAATTTTCCGAATCACCATGATCTCGAGCTTCATCTTTCATCTCCAAGCTCGGCGTTTCTTAAACTCTCAATTGGGTCAAACAAGGAGGCGAAGGAAGAGCGTCAGCTCGATTTGGCGATCGCCGAGAAAGCTTACGCAGAAGAAGCACGACGAGAGGCGAAACGACAGATCGAGATCGCCGAGGTCGAGTTCGCAAATGCAAAAATGATACGACAACAAGCTCAAGCAGAGTTGGAAAAAGCTAGGATCTTGAAGGAAGAAGCCACAAGGAAAATGAGCTCCACAATTATGGAAATCACTTGCCAAACTTGTCGGCTACACTTCCATATGAGCTCCGTTACACCGGAGGAGACCTCATTGGCCATTAGCTACATGTCATCCGCTACAACAGAAGGTGATGGAGAGTGA

Coding sequence (CDS)

GCTACAGCTTCTTCTTCTGGTGGTTCTCCACCTCCTCCACCCAATTCTGACCATGGGGTCACCAGTAAAAGAAAGAGAAGACCAGCAGGAACCCCAGTATTTTTCAGAGTGGAGAGCTTCATAGAACACCAAGATGCTTGTAATCTCCGGCAGCTGAGGTCCGATGCACCGCCGCCGTTGCTACCACCGCCATTACTACAACCCTACTCACGATCGATTTCTTACACCGGTGCCTCGACCAGCAACGATCATAGCTTTCAAATGGCTACACCATTACGAGGGTTTCCAATTTTATCATCGAACTTAGATCGAAACATCAACATTAATTTTCCGAATCACCATGATCTCGAGCTTCATCTTTCATCTCCAAGCTCGGCGTTTCTTAAACTCTCAATTGGGTCAAACAAGGAGGCGAAGGAAGAGCGTCAGCTCGATTTGGCGATCGCCGAGAAAGCTTACGCAGAAGAAGCACGACGAGAGGCGAAACGACAGATCGAGATCGCCGAGGTCGAGTTCGCAAATGCAAAAATGATACGACAACAAGCTCAAGCAGAGTTGGAAAAAGCTAGGATCTTGAAGGAAGAAGCCACAAGGAAAATGAGCTCCACAATTATGGAAATCACTTGCCAAACTTGTCGGCTACACTTCCATATGAGCTCCGTTACACCGGAGGAGACCTCATTGGCCATTAGCTACATGTCATCCGCTACAACAGAAGGTGATGGAGAGTGA

Protein sequence

ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTPVFFRVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSVTPEETSLAISYMSSATTEGDGE
Homology
[Close]
BLAST of Carg25260 vs. NCBI nr
Match: KAG7032598.1 (Protein SHOOT GRAVITROPISM 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 462.2 bits (1188), Expect = 2.7e-126
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0 

Query: 1   ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTPVFFRVESFIEHQDACNLRQLRSDAPPPL 60
           ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTPVFFRVESFIEHQDACNLRQLRSDAPPPL
Sbjct: 1   ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTPVFFRVESFIEHQDACNLRQLRSDAPPPL 60

Query: 61  LPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNININFPNHHDLELHL 120
           LPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNININFPNHHDLELHL
Sbjct: 61  LPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNININFPNHHDLELHL 120

Query: 121 SSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQ 180
           SSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQ
Sbjct: 121 SSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQ 180

Query: 181 QAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSVTPEETSLAISYMSSATTEG 240
           QAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSVTPEETSLAISYMSSATTEG
Sbjct: 181 QAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSVTPEETSLAISYMSSATTEG 240

Query: 241 DGE 244
           DGE
Sbjct: 241 DGE 243

[Close]
BLAST of Carg25260 vs. NCBI nr
Match: KAG6601900.1 (Zinc finger protein SHOOT GRAVITROPISM 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 404.1 bits (1037), Expect = 8.8e-109
Identity = 242/375 (64.53%), Postives = 242/375 (64.53%), Query Frame = 0 

Query: 1   ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTP---------------------------- 60
           ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTP                            
Sbjct: 11  ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQG 70

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 71  FQRDQNLQMHRRRHKVPWKLLKRAETAEAVKKKVFVCPEPTCLHHDPRHALGDLVGIKKH 130

Query: 121 --------------------------------------------VFFRVESFIEHQDACN 180
                                                       VF RVESFIEHQDACN
Sbjct: 131 FRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACN 190

Query: 181 LRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNINI 240
           LRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNINI
Sbjct: 191 LRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNINI 250

Query: 241 NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIA 244
           NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIA
Sbjct: 251 NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIA 310

[Close]
BLAST of Carg25260 vs. NCBI nr
Match: XP_022955982.1 (protein SHOOT GRAVITROPISM 5-like [Cucurbita moschata])

HSP 1 Score: 403.7 bits (1036), Expect = 1.1e-108
Identity = 241/375 (64.27%), Postives = 242/375 (64.53%), Query Frame = 0 

Query: 1   ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTP---------------------------- 60
           ATASSSGGSPPPPPNSDHG+TSKRKRRPAGTP                            
Sbjct: 11  ATASSSGGSPPPPPNSDHGITSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQG 70

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 71  FQRDQNLQMHRRRHKVPWKLLKRAETAEAVKKKVFVCPELTCLHHDPRHALGDLVGIKKH 130

Query: 121 --------------------------------------------VFFRVESFIEHQDACN 180
                                                       VF RVESFIEHQDACN
Sbjct: 131 FRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACN 190

Query: 181 LRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNINI 240
           LRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNINI
Sbjct: 191 LRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNINI 250

Query: 241 NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIA 244
           NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIA
Sbjct: 251 NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIA 310

[Close]
BLAST of Carg25260 vs. NCBI nr
Match: XP_023528793.1 (protein SHOOT GRAVITROPISM 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 401.7 bits (1031), Expect = 4.4e-108
Identity = 241/375 (64.27%), Postives = 241/375 (64.27%), Query Frame = 0 

Query: 1   ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTP---------------------------- 60
           ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTP                            
Sbjct: 11  ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQG 70

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 71  FQRDQNLQMHRRRHKVPWKLLKRAETAEAVKKKVFVCPEPTCLHHDPRHALGDLVGIKKH 130

Query: 121 --------------------------------------------VFFRVESFIEHQDACN 180
                                                       VF RVESFIEHQDACN
Sbjct: 131 FRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACN 190

Query: 181 LRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNINI 240
           LRQLRSDAPPPLLPPPLLQPYSRSISYTGASTS DHSFQMATPLRGFPILSSNLDRNINI
Sbjct: 191 LRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSTDHSFQMATPLRGFPILSSNLDRNINI 250

Query: 241 NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIA 244
           NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIA
Sbjct: 251 NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIA 310

[Close]
BLAST of Carg25260 vs. NCBI nr
Match: XP_022991065.1 (protein SHOOT GRAVITROPISM 5-like [Cucurbita maxima])

HSP 1 Score: 396.7 bits (1018), Expect = 1.4e-106
Identity = 239/375 (63.73%), Postives = 240/375 (64.00%), Query Frame = 0 

Query: 1   ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTP---------------------------- 60
           ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTP                            
Sbjct: 11  ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQG 70

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 71  FQRDQNLQMHRRRHKVPWKLLKRAETAEAVKKKVFVCPEPTCLHHDPRHALGDLVGIKKH 130

Query: 121 --------------------------------------------VFFRVESFIEHQDACN 180
                                                       VF RVESFIEHQDACN
Sbjct: 131 FRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACN 190

Query: 181 LRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNINI 240
           LRQLRSDAPP LLPPPLLQPYSRSISYTGASTSNDHSFQ ATPLRGFPILSSNLDRNINI
Sbjct: 191 LRQLRSDAPPLLLPPPLLQPYSRSISYTGASTSNDHSFQTATPLRGFPILSSNLDRNINI 250

Query: 241 NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIA 244
           NFPNHHDLELHLSSPSSAFLKLSIGSNKEAK+ERQLDLAIAEKAYAEEARREAKRQIEIA
Sbjct: 251 NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKDERQLDLAIAEKAYAEEARREAKRQIEIA 310

[Close]
BLAST of Carg25260 vs. ExPASy Swiss-Prot
Match: F4IPE3 (Zinc finger protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.0e-32
Identity = 102/258 (39.53%), Postives = 144/258 (55.81%), Query Frame = 0 

Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPP----LLPPPLLQPYSRSISYTGASTSNDHSFQM 92
           VF RVESFIEHQD C+ R++  + P P    +  P      + ++S   + T+   +  +
Sbjct: 185 VFSRVESFIEHQDNCSARRVHREPPRPPQTAVTVPACSSRTASTVSTPSSETNYGGTVAV 244

Query: 93  AT--PLRGFPI-------LSSNLDRNININF----------PNHHDLELHLSSPS----- 152
            T  PL G PI       + +N   N+N+            PN  + +  +  PS     
Sbjct: 245 TTPQPLEGRPIHQRISSSILTNSSNNLNLELQLLPLSSNQNPNQENQQQKVKEPSHHHNH 304

Query: 153 ---SAFLKLSIGSNKEAK-------------EERQLDLAIAEKAYAEEARREAKRQIEIA 212
              +  L LSI  +   +              E+ + +A+ EKAYAEEA+REAKRQ EIA
Sbjct: 305 NHDTTNLNLSIAPSSSYQHYNNFDRIKEIMASEQIMKIAMKEKAYAEEAKREAKRQREIA 364

Query: 213 EVEFANAKMIRQQAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSV---TPEE 244
           E EFANAK IRQ+AQAELE+A+ LKE++ +K+SSTIM++TCQTC+  F   +V   T +E
Sbjct: 365 ENEFANAKKIRQKAQAELERAKFLKEQSMKKISSTIMQVTCQTCKGQFQAVAVPAATADE 424

[Close]
BLAST of Carg25260 vs. ExPASy Swiss-Prot
Match: Q9C9X7 (Protein indeterminate-domain 14 OS=Arabidopsis thaliana OX=3702 GN=IDD14 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.3e-25
Identity = 93/235 (39.57%), Postives = 127/235 (54.04%), Query Frame = 0 

Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHS--FQMAT 92
           VF RVESFIEHQD C +R  RS      L     Q ++ + + T ++  N+ +    +  
Sbjct: 182 VFSRVESFIEHQDTCTVR--RSQPSNHRLHEQ--QQHTTNATQTASTAENNENGDLSIGP 241

Query: 93  PLRGFPIL------SSNLDRNININFPNHHDLELHL----SSPSSAFLKLSIGSNKEAKE 152
            L G P+       S      +   F  +  +EL L    +      L LSIG+  + K 
Sbjct: 242 ILPGHPLQRRQSPPSEQQPSTLLYPFVTNGSIELQLLPSRNCADETSLSLSIGT-MDQKT 301

Query: 153 ERQLDLAIAEKAYA----EEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEA 212
             +++    EK       EEARRE KRQIEIAE+EFA AK IRQ A+AEL KA + +EEA
Sbjct: 302 MSEVEKKSYEKGETSLEREEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEA 361

Query: 213 TRKMSSTIMEITCQTCRLHFH----------MSSVTPEETSLAISYMSSATTEGD 242
           +R++S+T+M+ITC  C+ HF            +  T E TSLA+SYMSSATTEG+
Sbjct: 362 SRRISATMMQITCHNCKQHFQAPAALVPPPPQTHCTDESTSLAVSYMSSATTEGE 411

[Close]
BLAST of Carg25260 vs. ExPASy Swiss-Prot
Match: Q9FRH4 (Protein indeterminate-domain 16 OS=Arabidopsis thaliana OX=3702 GN=IDD16 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-22
Identity = 86/223 (38.57%), Postives = 118/223 (52.91%), Query Frame = 0 

Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPL 92
           VF RVESFIEHQD C +RQ      P       LQ ++  +     +TS   +      L
Sbjct: 152 VFSRVESFIEHQDTCTIRQ------PQPTNHRHLQQHTMGLDAPSRTTS---TASFGPLL 211

Query: 93  RGFPILSSNLDRN---------ININFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQ 152
            G P+L      N          N +      LEL L   S    + S  +    K E  
Sbjct: 212 HGLPLLRPPRPSNQHSPAFAYPFNASSAPFESLELQL---SIGMARTSAQARHNEKRETS 271

Query: 153 L--DLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRKMS 212
           L  + A  E   AEE R+EAKRQIE+AE +F  AK IR++A+ ELEKA +++EEA ++++
Sbjct: 272 LTKERANEEARKAEETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVVREEAIKRIN 331

Query: 213 STIMEITCQTCRLHFHMSSVTPEET-SLAISYMSSATTEGDGE 244
           +T+MEITC +C+  F +     E T SL +SY+SSATTEG+ E
Sbjct: 332 ATMMEITCHSCKQLFQLPVTADESTSSLVMSYVSSATTEGECE 362

[Close]
BLAST of Carg25260 vs. ExPASy TrEMBL
Match: A0A6J1GV43 (protein SHOOT GRAVITROPISM 5-like OS=Cucurbita moschata OX=3662 GN=LOC111457814 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.5e-109
Identity = 241/375 (64.27%), Postives = 242/375 (64.53%), Query Frame = 0 

Query: 1   ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTP---------------------------- 60
           ATASSSGGSPPPPPNSDHG+TSKRKRRPAGTP                            
Sbjct: 11  ATASSSGGSPPPPPNSDHGITSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQG 70

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 71  FQRDQNLQMHRRRHKVPWKLLKRAETAEAVKKKVFVCPELTCLHHDPRHALGDLVGIKKH 130

Query: 121 --------------------------------------------VFFRVESFIEHQDACN 180
                                                       VF RVESFIEHQDACN
Sbjct: 131 FRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACN 190

Query: 181 LRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNINI 240
           LRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNINI
Sbjct: 191 LRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNINI 250

Query: 241 NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIA 244
           NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIA
Sbjct: 251 NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIA 310

[Close]
BLAST of Carg25260 vs. ExPASy TrEMBL
Match: A0A6J1JRU3 (protein SHOOT GRAVITROPISM 5-like OS=Cucurbita maxima OX=3661 GN=LOC111487771 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 6.8e-107
Identity = 239/375 (63.73%), Postives = 240/375 (64.00%), Query Frame = 0 

Query: 1   ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTP---------------------------- 60
           ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTP                            
Sbjct: 11  ATASSSGGSPPPPPNSDHGVTSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQG 70

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 71  FQRDQNLQMHRRRHKVPWKLLKRAETAEAVKKKVFVCPEPTCLHHDPRHALGDLVGIKKH 130

Query: 121 --------------------------------------------VFFRVESFIEHQDACN 180
                                                       VF RVESFIEHQDACN
Sbjct: 131 FRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACN 190

Query: 181 LRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHSFQMATPLRGFPILSSNLDRNINI 240
           LRQLRSDAPP LLPPPLLQPYSRSISYTGASTSNDHSFQ ATPLRGFPILSSNLDRNINI
Sbjct: 191 LRQLRSDAPPLLLPPPLLQPYSRSISYTGASTSNDHSFQTATPLRGFPILSSNLDRNINI 250

Query: 241 NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKEERQLDLAIAEKAYAEEARREAKRQIEIA 244
           NFPNHHDLELHLSSPSSAFLKLSIGSNKEAK+ERQLDLAIAEKAYAEEARREAKRQIEIA
Sbjct: 251 NFPNHHDLELHLSSPSSAFLKLSIGSNKEAKDERQLDLAIAEKAYAEEARREAKRQIEIA 310

[Close]
BLAST of Carg25260 vs. ExPASy TrEMBL
Match: A0A5D3BG30 (Protein SHOOT GRAVITROPISM 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00090 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 3.5e-87
Identity = 185/220 (84.09%), Postives = 196/220 (89.09%), Query Frame = 0 

Query: 33  VFFRVESFIEHQDACNLRQLRSD------APPPLLPPPLLQPY-SRSISYTGASTSNDHS 92
           VF RVESFIEHQD CNLR +RSD        PP  PP LLQPY SR++SYTGASTSNDH+
Sbjct: 102 VFSRVESFIEHQDTCNLRHMRSDQLQSAVVRPPPPPPLLLQPYNSRAVSYTGASTSNDHA 161

Query: 93  FQMA-TPLRGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIG-SNKEAKEERQ 152
           FQMA TPLRGFPILSSN DRNININ P+ HDLELHLSSPSSAFLKLSIG SNKE  ++RQ
Sbjct: 162 FQMASTPLRGFPILSSNSDRNININLPDRHDLELHLSSPSSAFLKLSIGSSNKEPSDDRQ 221

Query: 153 LDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRKMSST 212
           L+LAIAEKAYA+EARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEA+RKMSST
Sbjct: 222 LELAIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMSST 281

Query: 213 IMEITCQTCRLHFHMSSVTPEETSLAISYMSSATTEGDGE 244
           IMEITCQTCRLHFH+SS  PEETSLAISYMSSATTEGDGE
Sbjct: 282 IMEITCQTCRLHFHVSSAMPEETSLAISYMSSATTEGDGE 321

[Close]
BLAST of Carg25260 vs. ExPASy TrEMBL
Match: A0A0A0KJ22 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G092930 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 3.5e-87
Identity = 185/220 (84.09%), Postives = 196/220 (89.09%), Query Frame = 0 

Query: 33  VFFRVESFIEHQDACNLRQLRSD------APPPLLPPPLLQPY-SRSISYTGASTSNDHS 92
           VF RVESFIEHQD CNLR +RSD        PP  PP LLQPY SRS+SYTGASTSNDH+
Sbjct: 180 VFSRVESFIEHQDTCNLRHMRSDQLQSAVVRPPPPPPLLLQPYNSRSVSYTGASTSNDHA 239

Query: 93  FQMA-TPLRGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIG-SNKEAKEERQ 152
           FQMA TPLRGFPILSSN DRNININ P+ HDLELHLSSPSSAFLKLSIG SNKE  ++RQ
Sbjct: 240 FQMASTPLRGFPILSSNSDRNININLPDRHDLELHLSSPSSAFLKLSIGSSNKEPNDDRQ 299

Query: 153 LDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRKMSST 212
           L+LAIAEKAYA+EARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEA+RKM+ST
Sbjct: 300 LELAIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMNST 359

Query: 213 IMEITCQTCRLHFHMSSVTPEETSLAISYMSSATTEGDGE 244
           IMEITCQTCRLHFH+SS  PEETSLAISYMSSATTEGDGE
Sbjct: 360 IMEITCQTCRLHFHVSSAMPEETSLAISYMSSATTEGDGE 399

[Close]
BLAST of Carg25260 vs. ExPASy TrEMBL
Match: A0A1S3CS86 (protein SHOOT GRAVITROPISM 5 OS=Cucumis melo OX=3656 GN=LOC103504214 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 3.5e-87
Identity = 185/220 (84.09%), Postives = 196/220 (89.09%), Query Frame = 0 

Query: 33  VFFRVESFIEHQDACNLRQLRSD------APPPLLPPPLLQPY-SRSISYTGASTSNDHS 92
           VF RVESFIEHQD CNLR +RSD        PP  PP LLQPY SR++SYTGASTSNDH+
Sbjct: 180 VFSRVESFIEHQDTCNLRHMRSDQLQSAVVRPPPPPPLLLQPYNSRAVSYTGASTSNDHA 239

Query: 93  FQMA-TPLRGFPILSSNLDRNININFPNHHDLELHLSSPSSAFLKLSIG-SNKEAKEERQ 152
           FQMA TPLRGFPILSSN DRNININ P+ HDLELHLSSPSSAFLKLSIG SNKE  ++RQ
Sbjct: 240 FQMASTPLRGFPILSSNSDRNININLPDRHDLELHLSSPSSAFLKLSIGSSNKEPSDDRQ 299

Query: 153 LDLAIAEKAYAEEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEATRKMSST 212
           L+LAIAEKAYA+EARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEA+RKMSST
Sbjct: 300 LELAIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMSST 359

Query: 213 IMEITCQTCRLHFHMSSVTPEETSLAISYMSSATTEGDGE 244
           IMEITCQTCRLHFH+SS  PEETSLAISYMSSATTEGDGE
Sbjct: 360 IMEITCQTCRLHFHVSSAMPEETSLAISYMSSATTEGDGE 399

[Close]
BLAST of Carg25260 vs. TAIR 10
Match: AT2G01940.1 (C2H2-like zinc finger protein )

HSP 1 Score: 138.7 bits (348), Expect = 6.4e-33
Identity = 102/258 (39.53%), Postives = 144/258 (55.81%), Query Frame = 0 

Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPP----LLPPPLLQPYSRSISYTGASTSNDHSFQM 92
           VF RVESFIEHQD C+ R++  + P P    +  P      + ++S   + T+   +  +
Sbjct: 185 VFSRVESFIEHQDNCSARRVHREPPRPPQTAVTVPACSSRTASTVSTPSSETNYGGTVAV 244

Query: 93  AT--PLRGFPI-------LSSNLDRNININF----------PNHHDLELHLSSPS----- 152
            T  PL G PI       + +N   N+N+            PN  + +  +  PS     
Sbjct: 245 TTPQPLEGRPIHQRISSSILTNSSNNLNLELQLLPLSSNQNPNQENQQQKVKEPSHHHNH 304

Query: 153 ---SAFLKLSIGSNKEAK-------------EERQLDLAIAEKAYAEEARREAKRQIEIA 212
              +  L LSI  +   +              E+ + +A+ EKAYAEEA+REAKRQ EIA
Sbjct: 305 NHDTTNLNLSIAPSSSYQHYNNFDRIKEIMASEQIMKIAMKEKAYAEEAKREAKRQREIA 364

Query: 213 EVEFANAKMIRQQAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSV---TPEE 244
           E EFANAK IRQ+AQAELE+A+ LKE++ +K+SSTIM++TCQTC+  F   +V   T +E
Sbjct: 365 ENEFANAKKIRQKAQAELERAKFLKEQSMKKISSTIMQVTCQTCKGQFQAVAVPAATADE 424

[Close]
BLAST of Carg25260 vs. TAIR 10
Match: AT2G01940.2 (C2H2-like zinc finger protein )

HSP 1 Score: 138.7 bits (348), Expect = 6.4e-33
Identity = 102/258 (39.53%), Postives = 144/258 (55.81%), Query Frame = 0 

Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPP----LLPPPLLQPYSRSISYTGASTSNDHSFQM 92
           VF RVESFIEHQD C+ R++  + P P    +  P      + ++S   + T+   +  +
Sbjct: 96  VFSRVESFIEHQDNCSARRVHREPPRPPQTAVTVPACSSRTASTVSTPSSETNYGGTVAV 155

Query: 93  AT--PLRGFPI-------LSSNLDRNININF----------PNHHDLELHLSSPS----- 152
            T  PL G PI       + +N   N+N+            PN  + +  +  PS     
Sbjct: 156 TTPQPLEGRPIHQRISSSILTNSSNNLNLELQLLPLSSNQNPNQENQQQKVKEPSHHHNH 215

Query: 153 ---SAFLKLSIGSNKEAK-------------EERQLDLAIAEKAYAEEARREAKRQIEIA 212
              +  L LSI  +   +              E+ + +A+ EKAYAEEA+REAKRQ EIA
Sbjct: 216 NHDTTNLNLSIAPSSSYQHYNNFDRIKEIMASEQIMKIAMKEKAYAEEAKREAKRQREIA 275

Query: 213 EVEFANAKMIRQQAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSV---TPEE 244
           E EFANAK IRQ+AQAELE+A+ LKE++ +K+SSTIM++TCQTC+  F   +V   T +E
Sbjct: 276 ENEFANAKKIRQKAQAELERAKFLKEQSMKKISSTIMQVTCQTCKGQFQAVAVPAATADE 335

[Close]
BLAST of Carg25260 vs. TAIR 10
Match: AT2G01940.3 (C2H2-like zinc finger protein )

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-32
Identity = 101/256 (39.45%), Postives = 143/256 (55.86%), Query Frame = 0 

Query: 35  FRVESFIEHQDACNLRQLRSDAPPP----LLPPPLLQPYSRSISYTGASTSNDHSFQMAT 94
           FRVESFIEHQD C+ R++  + P P    +  P      + ++S   + T+   +  + T
Sbjct: 188 FRVESFIEHQDNCSARRVHREPPRPPQTAVTVPACSSRTASTVSTPSSETNYGGTVAVTT 247

Query: 95  --PLRGFPI-------LSSNLDRNININF----------PNHHDLELHLSSPS------- 154
             PL G PI       + +N   N+N+            PN  + +  +  PS       
Sbjct: 248 PQPLEGRPIHQRISSSILTNSSNNLNLELQLLPLSSNQNPNQENQQQKVKEPSHHHNHNH 307

Query: 155 -SAFLKLSIGSNKEAK-------------EERQLDLAIAEKAYAEEARREAKRQIEIAEV 214
            +  L LSI  +   +              E+ + +A+ EKAYAEEA+REAKRQ EIAE 
Sbjct: 308 DTTNLNLSIAPSSSYQHYNNFDRIKEIMASEQIMKIAMKEKAYAEEAKREAKRQREIAEN 367

Query: 215 EFANAKMIRQQAQAELEKARILKEEATRKMSSTIMEITCQTCRLHFHMSSV---TPEETS 244
           EFANAK IRQ+AQAELE+A+ LKE++ +K+SSTIM++TCQTC+  F   +V   T +ETS
Sbjct: 368 EFANAKKIRQKAQAELERAKFLKEQSMKKISSTIMQVTCQTCKGQFQAVAVPAATADETS 427

[Close]
BLAST of Carg25260 vs. TAIR 10
Match: AT1G68130.1 (indeterminate(ID)-domain 14 )

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-26
Identity = 93/235 (39.57%), Postives = 127/235 (54.04%), Query Frame = 0 

Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHS--FQMAT 92
           VF RVESFIEHQD C +R  RS      L     Q ++ + + T ++  N+ +    +  
Sbjct: 182 VFSRVESFIEHQDTCTVR--RSQPSNHRLHEQ--QQHTTNATQTASTAENNENGDLSIGP 241

Query: 93  PLRGFPIL------SSNLDRNININFPNHHDLELHL----SSPSSAFLKLSIGSNKEAKE 152
            L G P+       S      +   F  +  +EL L    +      L LSIG+  + K 
Sbjct: 242 ILPGHPLQRRQSPPSEQQPSTLLYPFVTNGSIELQLLPSRNCADETSLSLSIGT-MDQKT 301

Query: 153 ERQLDLAIAEKAYA----EEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEA 212
             +++    EK       EEARRE KRQIEIAE+EFA AK IRQ A+AEL KA + +EEA
Sbjct: 302 MSEVEKKSYEKGETSLEREEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEA 361

Query: 213 TRKMSSTIMEITCQTCRLHFH----------MSSVTPEETSLAISYMSSATTEGD 242
           +R++S+T+M+ITC  C+ HF            +  T E TSLA+SYMSSATTEG+
Sbjct: 362 SRRISATMMQITCHNCKQHFQAPAALVPPPPQTHCTDESTSLAVSYMSSATTEGE 411

[Close]
BLAST of Carg25260 vs. TAIR 10
Match: AT1G68130.2 (indeterminate(ID)-domain 14 )

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-26
Identity = 93/235 (39.57%), Postives = 127/235 (54.04%), Query Frame = 0 

Query: 33  VFFRVESFIEHQDACNLRQLRSDAPPPLLPPPLLQPYSRSISYTGASTSNDHS--FQMAT 92
           VF RVESFIEHQD C +R  RS      L     Q ++ + + T ++  N+ +    +  
Sbjct: 96  VFSRVESFIEHQDTCTVR--RSQPSNHRLHEQ--QQHTTNATQTASTAENNENGDLSIGP 155

Query: 93  PLRGFPIL------SSNLDRNININFPNHHDLELHL----SSPSSAFLKLSIGSNKEAKE 152
            L G P+       S      +   F  +  +EL L    +      L LSIG+  + K 
Sbjct: 156 ILPGHPLQRRQSPPSEQQPSTLLYPFVTNGSIELQLLPSRNCADETSLSLSIGT-MDQKT 215

Query: 153 ERQLDLAIAEKAYA----EEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEA 212
             +++    EK       EEARRE KRQIEIAE+EFA AK IRQ A+AEL KA + +EEA
Sbjct: 216 MSEVEKKSYEKGETSLEREEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEA 275

Query: 213 TRKMSSTIMEITCQTCRLHFH----------MSSVTPEETSLAISYMSSATTEGD 242
           +R++S+T+M+ITC  C+ HF            +  T E TSLA+SYMSSATTEG+
Sbjct: 276 SRRISATMMQITCHNCKQHFQAPAALVPPPPQTHCTDESTSLAVSYMSSATTEGE 325

The following BLAST results are available for this feature:
BLAST of Carg25260 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032598.12.7e-126100.00Protein SHOOT GRAVITROPISM 5, partial [Cucurbita argyrosperma subsp. argyrosperm... [more]
KAG6601900.18.8e-10964.53Zinc finger protein SHOOT GRAVITROPISM 5, partial [Cucurbita argyrosperma subsp.... [more]
XP_022955982.11.1e-10864.27protein SHOOT GRAVITROPISM 5-like [Cucurbita moschata][more]
XP_023528793.14.4e-10864.27protein SHOOT GRAVITROPISM 5-like [Cucurbita pepo subsp. pepo][more]
XP_022991065.11.4e-10663.73protein SHOOT GRAVITROPISM 5-like [Cucurbita maxima][more]
BLAST of Carg25260 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4IPE39.0e-3239.53Zinc finger protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5... [more]
Q9C9X76.3e-2539.57Protein indeterminate-domain 14 OS=Arabidopsis thaliana OX=3702 GN=IDD14 PE=1 SV... [more]
Q9FRH41.0e-2238.57Protein indeterminate-domain 16 OS=Arabidopsis thaliana OX=3702 GN=IDD16 PE=2 SV... [more]
BLAST of Carg25260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GV435.5e-10964.27protein SHOOT GRAVITROPISM 5-like OS=Cucurbita moschata OX=3662 GN=LOC111457814 ... [more]
A0A6J1JRU36.8e-10763.73protein SHOOT GRAVITROPISM 5-like OS=Cucurbita maxima OX=3661 GN=LOC111487771 PE... [more]
A0A5D3BG303.5e-8784.09Protein SHOOT GRAVITROPISM 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A0A0KJ223.5e-8784.09C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G092930 P... [more]
A0A1S3CS863.5e-8784.09protein SHOOT GRAVITROPISM 5 OS=Cucumis melo OX=3656 GN=LOC103504214 PE=4 SV=1[more]
BLAST of Carg25260 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G01940.16.4e-3339.53C2H2-like zinc finger protein [more]
AT2G01940.26.4e-3339.53C2H2-like zinc finger protein [more]
AT2G01940.31.4e-3239.45C2H2-like zinc finger protein [more]
AT1G68130.14.4e-2639.57indeterminate(ID)-domain 14 [more]
AT1G68130.24.4e-2639.57indeterminate(ID)-domain 14 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 144..199
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availablePANTHERPTHR34946:SF8ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5coord: 136..243
coord: 33..127
IPR039288Zinc finger protein SHOOT GRAVITROPISM 5-likePANTHERPTHR34946OS03G0310200 PROTEINcoord: 136..243
IPR039288Zinc finger protein SHOOT GRAVITROPISM 5-likePANTHERPTHR34946OS03G0310200 PROTEINcoord: 33..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25260-RACarg25260-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009630 gravitropism
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity