Carg25240 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25240
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	CLAVATA3/ESR (CLE)-related protein 17-like
Location	Carg_Chr04: 16824058 .. 16824339 (-)
RNA-Seq Expression	Carg25240
Synteny	Carg25240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACTCACAACCCACGCCTCAGCAGCCACCACCGCATACGCGTTTCTCCTCTTCTTCTGGGTCCTCCTCATTTTTCCTCCGCCTACTCTCTGTCTTCATCTACCACCACCGCCCCCGACGTCAAGGAAACTAGTCCACTTCTCCACGGCGTCCTTATCACATGCAACTTCCCCACCTGAGCTCCTCCACCACCGTCCTACCTCAGCCGCTGCTGCCGCCGCCGTTTACACCGACGACAAGCGGTTAATCCACACGGGTCCGAATCCTCTTCACAACTAA

mRNA sequence

ATGACACTCACAACCCACGCCTCAGCAGCCACCACCGCATACGCGTTTCTCCTCTTCTTCTGGGTCCTCCTCATTTTTCCTCCGCCTACTCTCTGTCTTCATCTACCACCACCGCCCCCGACGTCAAGGAAACTAGTCCACTTCTCCACGGCGTCCTTATCACATGCAACTTCCCCACCTGAGCTCCTCCACCACCGTCCTACCTCAGCCGCTGCTGCCGCCGCCGTTTACACCGACGACAAGCGGTTAATCCACACGGGTCCGAATCCTCTTCACAACTAA

Coding sequence (CDS)

ATGACACTCACAACCCACGCCTCAGCAGCCACCACCGCATACGCGTTTCTCCTCTTCTTCTGGGTCCTCCTCATTTTTCCTCCGCCTACTCTCTGTCTTCATCTACCACCACCGCCCCCGACGTCAAGGAAACTAGTCCACTTCTCCACGGCGTCCTTATCACATGCAACTTCCCCACCTGAGCTCCTCCACCACCGTCCTACCTCAGCCGCTGCTGCCGCCGCCGTTTACACCGACGACAAGCGGTTAATCCACACGGGTCCGAATCCTCTTCACAACTAA

Protein sequence

MTLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHATSPPELLHHRPTSAAAAAAVYTDDKRLIHTGPNPLHN

Homology

[Close]

BLAST of Carg25240 vs. NCBI nr
Match: KAG7032578.1 (hypothetical protein SDJN02_06627, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.7 bits (478), Expect = 2.2e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MTLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHATSPP 60
          MTLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHATSPP
Sbjct: 1  MTLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHATSPP 60

Query: 61 ELLHHRPTSAAAAAAVYTDDKRLIHTGPNPLHN 94
          ELLHHRPTSAAAAAAVYTDDKRLIHTGPNPLHN
Sbjct: 61 ELLHHRPTSAAAAAAVYTDDKRLIHTGPNPLHN 93

[Close]

BLAST of Carg25240 vs. NCBI nr
Match: KAG6601877.1 (CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183.0 bits (463), Expect = 1.2e-42
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MTLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHATSPP 60
          MTLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHATSPP
Sbjct: 1  MTLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHATSPP 60

Query: 61 ELLHHRPTSAAAAAAVYTDDKRLIHTGPNPLHN 94
          ELLHHRPTS AAAAAVYTDDKRLIHTGPNPLHN
Sbjct: 61 ELLHHRPTS-AAAAAVYTDDKRLIHTGPNPLHN 92

[Close]

BLAST of Carg25240 vs. NCBI nr
Match: XP_008437694.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325.1 CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-18
Identity = 60/97 (61.86%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 2  TLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHA----- 61
          T + H +  TT  A LLFFWVLLI  P TLCLHLPPPPP SRKL  FSTAS  HA     
Sbjct: 7  TSSRHRARPTT--ALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAPPTTT 66

Query: 62 TSPPELLHHRPTSAAAAAAVYTDDKRLIHTGPNPLHN 94
          TSP ELL  R  ++A     Y +DKRLIHTGPNPLHN
Sbjct: 67 TSPAELLDRRQPASA-----YREDKRLIHTGPNPLHN 96

[Close]

BLAST of Carg25240 vs. NCBI nr
Match: KAG7016766.1 (hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-17
Identity = 61/98 (62.24%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 1  MTLTTHASAATTAYAFLLFFWVLLIFPP--PTLCLHLPPPPPTSRKLVHFSTASLSH--- 60
          +T + H + ATT  A +LF WVLLI  P   TLC  LPP P   RKLV FSTAS  H   
Sbjct: 6  VTCSRHGAGATTTTALVLFLWVLLILAPATTTLCFQLPPSP---RKLVRFSTASFRHAPP 65

Query: 61 ATSPPELLHHRPTSAAAAAAVYTDDKRLIHTGPNPLHN 94
          ATSP ELLH R +SA AAAA Y D+KRLIHTGPNPLHN
Sbjct: 66 ATSPAELLHRRQSSAGAAAA-YGDEKRLIHTGPNPLHN 99

[Close]

BLAST of Carg25240 vs. NCBI nr
Match: XP_011656246.1 (CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical protein Csa_008181 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 6.7e-17
Identity = 58/97 (59.79%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 2  TLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHA----- 61
          T + H    TT  A  LFFWVLLI  P TLCLHLPPPPP SRKL  FSTA   HA     
Sbjct: 7  TSSRHRVRPTT--ALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAPPTTT 66

Query: 62 TSPPELLHHRPTSAAAAAAVYTDDKRLIHTGPNPLHN 94
          TSP EL       +AA AA Y ++KRLIHTGPNPLHN
Sbjct: 67 TSPAELFDRH--QSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of Carg25240 vs. ExPASy Swiss-Prot
Match: Q8L9H6 (CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.2e-04
Identity = 33/89 (37.08%), Postives = 41/89 (46.07%), Query Frame = 0


Query: 16 FLLFFWVLLIFPPPTLC---------LHL--PPPPPTSRKLVHFSTASLSHATSPPELLH 75
          F LFF+V  +     L          LHL   PPPP  RK + +STA      S  +   
Sbjct: 25 FFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTAPFRGPLSRDD--- 84

Query: 76 HRPTSAAAAAAVYTDDKRLIHTGPNPLHN 94
                     +Y DDKR++HTGPNPLHN
Sbjct: 85 -----------IYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of Carg25240 vs. ExPASy TrEMBL
Match: A0A5A7TY55 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00340 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.7e-19
Identity = 60/97 (61.86%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 2  TLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHA----- 61
          T + H +  TT  A LLFFWVLLI  P TLCLHLPPPPP SRKL  FSTAS  HA     
Sbjct: 7  TSSRHRARPTT--ALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAPPTTT 66

Query: 62 TSPPELLHHRPTSAAAAAAVYTDDKRLIHTGPNPLHN 94
          TSP ELL  R  ++A     Y +DKRLIHTGPNPLHN
Sbjct: 67 TSPAELLDRRQPASA-----YREDKRLIHTGPNPLHN 96

[Close]

BLAST of Carg25240 vs. ExPASy TrEMBL
Match: A0A1S3AUM2 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC103483038 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.7e-19
Identity = 60/97 (61.86%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 2  TLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHA----- 61
          T + H +  TT  A LLFFWVLLI  P TLCLHLPPPPP SRKL  FSTAS  HA     
Sbjct: 7  TSSRHRARPTT--ALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAPPTTT 66

Query: 62 TSPPELLHHRPTSAAAAAAVYTDDKRLIHTGPNPLHN 94
          TSP ELL  R  ++A     Y +DKRLIHTGPNPLHN
Sbjct: 67 TSPAELLDRRQPASA-----YREDKRLIHTGPNPLHN 96

[Close]

BLAST of Carg25240 vs. ExPASy TrEMBL
Match: A0A0A0KSY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.3e-17
Identity = 58/97 (59.79%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 2  TLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHA----- 61
          T + H    TT  A  LFFWVLLI  P TLCLHLPPPPP SRKL  FSTA   HA     
Sbjct: 7  TSSRHRVRPTT--ALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAPPTTT 66

Query: 62 TSPPELLHHRPTSAAAAAAVYTDDKRLIHTGPNPLHN 94
          TSP EL       +AA AA Y ++KRLIHTGPNPLHN
Sbjct: 67 TSPAELFDRH--QSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of Carg25240 vs. TAIR 10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 45.1 bits (105), Expect = 3.7e-05
Identity = 33/89 (37.08%), Postives = 41/89 (46.07%), Query Frame = 0


Query: 16 FLLFFWVLLIFPPPTLC---------LHL--PPPPPTSRKLVHFSTASLSHATSPPELLH 75
          F LFF+V  +     L          LHL   PPPP  RK + +STA      S  +   
Sbjct: 25 FFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTAPFRGPLSRDD--- 84

Query: 76 HRPTSAAAAAAVYTDDKRLIHTGPNPLHN 94
                     +Y DDKR++HTGPNPLHN
Sbjct: 85 -----------IYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of Carg25240 vs. TAIR 10
Match: AT1G70895.2 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 45.1 bits (105), Expect = 3.7e-05
Identity = 33/89 (37.08%), Postives = 41/89 (46.07%), Query Frame = 0


Query: 16 FLLFFWVLLIFPPPTLC---------LHL--PPPPPTSRKLVHFSTASLSHATSPPELLH 75
          F LFF+V  +     L          LHL   PPPP  RK + +STA      S  +   
Sbjct: 25 FFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTAPFRGPLSRDD--- 84

Query: 76 HRPTSAAAAAAVYTDDKRLIHTGPNPLHN 94
                     +Y DDKR++HTGPNPLHN
Sbjct: 85 -----------IYGDDKRVVHTGPNPLHN 99

The following BLAST results are available for this feature:

BLAST of Carg25240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032578.1	2.2e-44	100.00	hypothetical protein SDJN02_06627, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601877.1	1.2e-42	98.92	CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_008437694.1	1.6e-18	61.86	PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325...	[more]
KAG7016766.1	1.8e-17	62.24	hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_011656246.1	6.7e-17	59.79	CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical...	[more]

BLAST of Carg25240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9H6	5.2e-04	37.08	CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 P...	[more]

BLAST of Carg25240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TY55	7.7e-19	61.86	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3AUM2	7.7e-19	61.86	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC1034830...	[more]
A0A0A0KSY2	3.3e-17	59.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1	[more]

BLAST of Carg25240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70895.1	3.7e-05	37.08	CLAVATA3/ESR-RELATED 17	[more]
AT1G70895.2	3.7e-05	37.08	CLAVATA3/ESR-RELATED 17	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34545:SF7	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16	coord: 8..93
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	CLAVATA3/ESR (CLE)-RELATED PROTEIN 22	coord: 8..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25240-RA	Carg25240-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development