Carg25239 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTGAAGAAAATTCCAGTAGTAGTAATTACATGCGCTCCCTTTTGGATTCAAGGGCGAGCGCTCGTCTTCCTCTTTCTGCTTTTTCTTCTTTTGCTTTTGGTTCTTGCAAGGAAGGCTGGTACTACCGCTGCCTTGGAGTTGACCCTTGAGATCTCTTTCTCTCTAATCCATATACTCATTTCAAGGAATTTTCATTTTCTTTAAGTTTTTGCGATTTTTCTCTTTTGATTTTTTGATACCGGCGCTAGCTTCGGTGAGTTTCTCGGGGCTGTTGTCGTCGGTATCGGGTTCCCTGATTCGGATATAGTTTGAAGGAAAAAGAAGGGATTGCGATTTCTTTTTTTTTTTTTTTTTTTTTAATGAAGATGTTGCTGTACAAGCAGAAGAAGAACCAGAATGTTAAGGGCAATAGGCTGTTGATCAGCATCAATGTGCTCGGCAGCGCTGGCCCGATTCGATTTATTGTGAGCGAGGAGCAACTTGTTGCTGATGTTATTGATACCGCGTTGAAATCCTACGCGCGTGAGGGCCGGCTCCCAATTCTTGGCTCTGATCTTCACGATTTCCAGCTTTATTGTCCGAGTGCTGGACCAGATGGTAATTCTAATTATATATTTTGTTCTCAATTCATTTGTGTTAATTCGTTGCAATTTTCCTCTACAATCATGTTGCATGTTTCTAATCTGAAAGGATGGTGAAAAATTAGATGTTATTCGGTATTAATCTCATTTTGTGATGGGATTCTCTGTTTTGGGATGTTTGGATTCTCTGTTGTTCTGTCTTGAGAATCCTCTGATCAAAAAAATTCTGGGCTGTAGTTTCTCATATTGTATGGGTTTTTTTGTGCAGCCTTGAGTCCATGGGACACAATTGGATCGCACGGAGCTCGAAACTTCACGTTGTGCAAGAAACCACAGGCAGAGAAAGCGGGAGAAGATGGAAAAGCAGCATCACGGCCAGCCATCCATCGCAAAGCCTCAGGGAGCTGGAAGTCATGGATCAACAAGTCTCTGAATATGAAAATCTATTCCCATTGA ATGGTTGAAGAAAATTCCAGTAGTAGTAATTACATGCGCTCCCTTTTGGATTCAAGGGCGAGCGCTCGTCTTCCTCTTTCTGCTTTTTCTTCTTTTGCTTTTGGTTCTTGCAAGGAAGGCTGGTACTACCGCTGCCTTGGAATGTTGCTGTACAAGCAGAAGAAGAACCAGAATGTTAAGGGCAATAGGCTGTTGATCAGCATCAATGTGCTCGGCAGCGCTGGCCCGATTCGATTTATTGTGAGCGAGGAGCAACTTGTTGCTGATGTTATTGATACCGCGTTGAAATCCTACGCGCGTGAGGGCCGGCTCCCAATTCTTGGCTCTGATCTTCACGATTTCCAGCTTTATTGTCCGAGTGCTGGACCAGATGCCTTGAGTCCATGGGACACAATTGGATCGCACGGAGCTCGAAACTTCACGTTGTGCAAGAAACCACAGGCAGAGAAAGCGGGAGAAGATGGAAAAGCAGCATCACGGCCAGCCATCCATCGCAAAGCCTCAGGGAGCTGGAAGTCATGGATCAACAAGTCTCTGAATATGAAAATCTATTCCCATTGA ATGGTTGAAGAAAATTCCAGTAGTAGTAATTACATGCGCTCCCTTTTGGATTCAAGGGCGAGCGCTCGTCTTCCTCTTTCTGCTTTTTCTTCTTTTGCTTTTGGTTCTTGCAAGGAAGGCTGGTACTACCGCTGCCTTGGAATGTTGCTGTACAAGCAGAAGAAGAACCAGAATGTTAAGGGCAATAGGCTGTTGATCAGCATCAATGTGCTCGGCAGCGCTGGCCCGATTCGATTTATTGTGAGCGAGGAGCAACTTGTTGCTGATGTTATTGATACCGCGTTGAAATCCTACGCGCGTGAGGGCCGGCTCCCAATTCTTGGCTCTGATCTTCACGATTTCCAGCTTTATTGTCCGAGTGCTGGACCAGATGCCTTGAGTCCATGGGACACAATTGGATCGCACGGAGCTCGAAACTTCACGTTGTGCAAGAAACCACAGGCAGAGAAAGCGGGAGAAGATGGAAAAGCAGCATCACGGCCAGCCATCCATCGCAAAGCCTCAGGGAGCTGGAAGTCATGGATCAACAAGTCTCTGAATATGAAAATCTATTCCCATTGA MVEENSSSSNYMRSLLDSRASARLPLSAFSSFAFGSCKEGWYYRCLGMLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPILGSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAIHRKASGSWKSWINKSLNMKIYSH Homology
BLAST of Carg25239 vs. NCBI nr
Match: KAG7032577.1 (hypothetical protein SDJN02_06626, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 376.3 bits (965), Expect = 1.5e-100 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
BLAST of Carg25239 vs. NCBI nr
Match: KAG6579252.1 (hypothetical protein SDJN03_23700, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 299.7 bits (766), Expect = 1.8e-77 Identity = 156/197 (79.19%), Postives = 163/197 (82.74%), Query Frame = 0
BLAST of Carg25239 vs. NCBI nr
Match: KAG6601876.1 (hypothetical protein SDJN03_07109, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 292.4 bits (747), Expect = 2.8e-75 Identity = 153/186 (82.26%), Postives = 153/186 (82.26%), Query Frame = 0
BLAST of Carg25239 vs. NCBI nr
Match: XP_022959923.1 (uncharacterized protein At4g22758-like [Cucurbita moschata]) HSP 1 Score: 284.6 bits (727), Expect = 5.9e-73 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of Carg25239 vs. NCBI nr
Match: XP_023521148.1 (uncharacterized protein At4g22758-like [Cucurbita pepo subsp. pepo] >XP_023521149.1 uncharacterized protein At4g22758-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 283.1 bits (723), Expect = 1.7e-72 Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0
BLAST of Carg25239 vs. ExPASy Swiss-Prot
Match: Q56XJ7 (Uncharacterized protein At4g22758 OS=Arabidopsis thaliana OX=3702 GN=At4g22758 PE=2 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04 Identity = 31/93 (33.33%), Postives = 47/93 (50.54%), Query Frame = 0
BLAST of Carg25239 vs. ExPASy TrEMBL
Match: A0A6J1H7B9 (uncharacterized protein At4g22758-like OS=Cucurbita moschata OX=3662 GN=LOC111460829 PE=4 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 2.9e-73 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of Carg25239 vs. ExPASy TrEMBL
Match: A0A6J1JP66 (uncharacterized protein At4g22758 OS=Cucurbita maxima OX=3661 GN=LOC111487636 PE=4 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 5.4e-72 Identity = 137/139 (98.56%), Postives = 137/139 (98.56%), Query Frame = 0
BLAST of Carg25239 vs. ExPASy TrEMBL
Match: A0A2N9ETJ3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5995 PE=4 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 1.7e-65 Identity = 135/189 (71.43%), Postives = 151/189 (79.89%), Query Frame = 0
BLAST of Carg25239 vs. ExPASy TrEMBL
Match: A0A5D3E3V5 (Senescence-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00320 PE=4 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 9.3e-64 Identity = 133/186 (71.51%), Postives = 140/186 (75.27%), Query Frame = 0
BLAST of Carg25239 vs. ExPASy TrEMBL
Match: A0A0A0KUW8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G569870 PE=4 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 4.6e-63 Identity = 122/139 (87.77%), Postives = 128/139 (92.09%), Query Frame = 0
BLAST of Carg25239 vs. TAIR 10
Match: AT1G70780.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 183.7 bits (465), Expect = 1.3e-46 Identity = 90/140 (64.29%), Postives = 105/140 (75.00%), Query Frame = 0
BLAST of Carg25239 vs. TAIR 10
Match: AT1G23150.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70780.1); Has 124 Blast hits to 124 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 175.6 bits (444), Expect = 3.6e-44 Identity = 91/142 (64.08%), Postives = 105/142 (73.94%), Query Frame = 0
BLAST of Carg25239 vs. TAIR 10
Match: AT5G37730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 99.4 bits (246), Expect = 3.3e-21 Identity = 51/115 (44.35%), Postives = 72/115 (62.61%), Query Frame = 0
BLAST of Carg25239 vs. TAIR 10
Match: AT1G70782.1 (conserved peptide upstream open reading frame 28 ) HSP 1 Score: 57.8 bits (138), Expect = 1.1e-08 Identity = 29/48 (60.42%), Postives = 32/48 (66.67%), Query Frame = 0
BLAST of Carg25239 vs. TAIR 10
Match: AT1G23149.1 (conserved peptide upstream open reading frame 29 ) HSP 1 Score: 50.4 bits (119), Expect = 1.8e-06 Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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