Carg25236 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25236
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	serine-rich protein-related
Location	Carg_Chr16: 7861252 .. 7861542 (-)
RNA-Seq Expression	Carg25236
Synteny	Carg25236

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCGATCAGCGCGGAGCCAAAACAGGTAACGACGAATTGCAACTCGCCGACCTCGAAATCCGCGCAGCCGGAGTTGGAATTAGACGATCAGAAGAAGAACGCGCAGATGACGAGGTCGCCGAGCGCTAGATCGACCTGCCTCTGCTCTCCGACGACGCACGTTGGATCTTTCCGGTGCCGGCTTCACCGAGGCACTGCCATCTCCCGCGGCGGCTCCGAGGGATCTAACCTCTCCGATCTGGCTCAGAAATCGGCGGCGGTGGAGGATTCAATGGAAGGTGAGTAG

mRNA sequence

ATGGAACCGATCAGCGCGGAGCCAAAACAGGTAACGACGAATTGCAACTCGCCGACCTCGAAATCCGCGCAGCCGGAGTTGGAATTAGACGATCAGAAGAAGAACGCGCAGATGACGAGGTCGCCGAGCGCTAGATCGACCTGCCTCTGCTCTCCGACGACGCACGTTGGATCTTTCCGGTGCCGGCTTCACCGAGGCACTGCCATCTCCCGCGGCGGCTCCGAGGGATCTAACCTCTCCGATCTGGCTCAGAAATCGGCGGCGGTGGAGGATTCAATGGAAGGTGAGTAG

Coding sequence (CDS)

ATGGAACCGATCAGCGCGGAGCCAAAACAGGTAACGACGAATTGCAACTCGCCGACCTCGAAATCCGCGCAGCCGGAGTTGGAATTAGACGATCAGAAGAAGAACGCGCAGATGACGAGGTCGCCGAGCGCTAGATCGACCTGCCTCTGCTCTCCGACGACGCACGTTGGATCTTTCCGGTGCCGGCTTCACCGAGGCACTGCCATCTCCCGCGGCGGCTCCGAGGGATCTAACCTCTCCGATCTGGCTCAGAAATCGGCGGCGGTGGAGGATTCAATGGAAGGTGAGTAG

Protein sequence

MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKNAQMTRSPSARSTCLCSPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSMEGE

Homology

[Close]

BLAST of Carg25236 vs. NCBI nr
Match: KAG7015599.1 (hypothetical protein SDJN02_23235, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKNAQMTRSPSARSTCLCSPTTHVGSFR 60
          MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKNAQMTRSPSARSTCLCSPTTHVGSFR
Sbjct: 1  MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKNAQMTRSPSARSTCLCSPTTHVGSFR 60

Query: 61 CRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSMEGE 97
          CRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSMEGE
Sbjct: 61 CRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSMEGE 96

[Close]

BLAST of Carg25236 vs. NCBI nr
Match: KAG6577543.1 (hypothetical protein SDJN03_25117, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.3 bits (456), Expect = 8.1e-42
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKNAQMTRSPSARSTCLCSPTTHVGSFR 60
          MEPI AEPKQVTTNCNSPTSKSAQPELELDDQKKNAQMTRSPSARSTCLCSPTTHVGSFR
Sbjct: 1  MEPIIAEPKQVTTNCNSPTSKSAQPELELDDQKKNAQMTRSPSARSTCLCSPTTHVGSFR 60

Query: 61 CRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSME 95
          CRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSME
Sbjct: 61 CRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSME 94

[Close]

BLAST of Carg25236 vs. NCBI nr
Match: XP_022143490.1 (uncharacterized protein LOC111013367 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-25
Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 1   MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKN-----------AQMTRSPSARSTCL 60
           M+ + AEPKQ   NC +PT+KSA PEL+LD+ KK+           ++M++SPS +S CL
Sbjct: 1   MDHVGAEPKQPKMNCKTPTAKSALPELDLDELKKSSHNLVMSPTALSRMSKSPSTKSNCL 60

Query: 61  CSPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSME 95
           CSPTTH+GSFRCR HR TAISRGGS GSNLSDLAQKSAA+EDS+E
Sbjct: 61  CSPTTHIGSFRCRRHRSTAISRGGSVGSNLSDLAQKSAAMEDSLE 105

[Close]

BLAST of Carg25236 vs. NCBI nr
Match: KGN55991.1 (hypothetical protein Csa_011649 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-23
Identity = 64/101 (63.37%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKNA----------QMTRSPSARSTCLC 60
           M+PI  +PKQ  TNC +PTSKSA  E E DD KKNA          +MT+S S +S CLC
Sbjct: 1   MDPIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTKSRSIKSNCLC 60

Query: 61  SPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVED 92
           SPTTH+GSFRCR HR T+ISRGGS GSNLSDL QKS A+ED
Sbjct: 61  SPTTHIGSFRCRRHRSTSISRGGSVGSNLSDLVQKSEAMED 101

[Close]

BLAST of Carg25236 vs. NCBI nr
Match: TYK19387.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 62/101 (61.39%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 1   MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKNA----------QMTRSPSARSTCLC 60
           M+PI  + KQ  TNC +PTSKSA  E E DD KKNA          +MT+SPS +S CLC
Sbjct: 1   MDPIRTDSKQTKTNCKTPTSKSAMVETEFDDLKKNAHLLMSPTALSRMTKSPSIKSNCLC 60

Query: 61  SPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVED 92
           SPTTH+GSFRCR HR TA+SRG S GSNLSDL QKS  +ED
Sbjct: 61  SPTTHIGSFRCRRHRSTAMSRGASVGSNLSDLGQKSETMED 101

[Close]

BLAST of Carg25236 vs. ExPASy TrEMBL
Match: A0A6J1CNY2 (uncharacterized protein LOC111013367 OS=Momordica charantia OX=3673 GN=LOC111013367 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.8e-26
Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 1   MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKN-----------AQMTRSPSARSTCL 60
           M+ + AEPKQ   NC +PT+KSA PEL+LD+ KK+           ++M++SPS +S CL
Sbjct: 1   MDHVGAEPKQPKMNCKTPTAKSALPELDLDELKKSSHNLVMSPTALSRMSKSPSTKSNCL 60

Query: 61  CSPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSME 95
           CSPTTH+GSFRCR HR TAISRGGS GSNLSDLAQKSAA+EDS+E
Sbjct: 61  CSPTTHIGSFRCRRHRSTAISRGGSVGSNLSDLAQKSAAMEDSLE 105

[Close]

BLAST of Carg25236 vs. ExPASy TrEMBL
Match: A0A0A0L7C7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045050 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.8e-24
Identity = 64/101 (63.37%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKNA----------QMTRSPSARSTCLC 60
           M+PI  +PKQ  TNC +PTSKSA  E E DD KKNA          +MT+S S +S CLC
Sbjct: 1   MDPIRTQPKQTKTNCKTPTSKSAMVETEFDDLKKNANLLMSPTALSRMTKSRSIKSNCLC 60

Query: 61  SPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVED 92
           SPTTH+GSFRCR HR T+ISRGGS GSNLSDL QKS A+ED
Sbjct: 61  SPTTHIGSFRCRRHRSTSISRGGSVGSNLSDLVQKSEAMED 101

[Close]

BLAST of Carg25236 vs. ExPASy TrEMBL
Match: A0A5D3D753 (Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00180 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.3e-23
Identity = 62/101 (61.39%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 1   MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKNA----------QMTRSPSARSTCLC 60
           M+PI  + KQ  TNC +PTSKSA  E E DD KKNA          +MT+SPS +S CLC
Sbjct: 1   MDPIRTDSKQTKTNCKTPTSKSAMVETEFDDLKKNAHLLMSPTALSRMTKSPSIKSNCLC 60

Query: 61  SPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVED 92
           SPTTH+GSFRCR HR TA+SRG S GSNLSDL QKS  +ED
Sbjct: 61  SPTTHIGSFRCRRHRSTAMSRGASVGSNLSDLGQKSETMED 101

[Close]

BLAST of Carg25236 vs. ExPASy TrEMBL
Match: A0A5N6L3X1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026425 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 1   MEPISAEPKQVTTNCNSPTSKSAQPELELDDQKKNAQMTRSPSARST----------CLC 60
           ME +  +P ++  N      K   PE+ LDD KK+  +  SPS + T          CLC
Sbjct: 1   MEEVEQKPPKI--NLKPVNPKINIPEINLDDIKKHPHLLVSPSLKETKAKQSGRWKNCLC 60

Query: 61  SPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSMEGE 97
           SPTTHVGSFRCR HR +++ RGGS GS LS+LA KS AV DS++ +
Sbjct: 61  SPTTHVGSFRCRHHRNSSMHRGGSVGSKLSELAHKSGAVSDSLQAQ 104

[Close]

BLAST of Carg25236 vs. ExPASy TrEMBL
Match: A0A2P5ELH4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_179150 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 7   EPKQVTTNCNSPTSKSAQ---PELELDDQKKNAQ-------------MTRSPSARSTCLC 66
           + K V  + +SP  K+ +   PE+ L++ KK+               +T+S S R  CLC
Sbjct: 2   DDKVVQRSPSSPKMKNYKLNIPEINLEELKKHTHILVVSPRRVQAPAVTKSSSTRWNCLC 61

Query: 67  SPTTHVGSFRCRLHRGTAISRGGSEGSNLSDLAQKSAAVEDSMEGE 97
           SPTTH GSFRCR HR + ++RGGS GSNLS+LA+KS A+ DS+E +
Sbjct: 62  SPTTHAGSFRCRHHRSSGMNRGGSVGSNLSELARKSGAIGDSLEAQ 107

[Close]

BLAST of Carg25236 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related )

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-09
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 18  PTSKSAQPELELDDQKKNAQMTRSPSARST---CLCSPTTHVGSFRCRLHRGTAISRGGS 77
           P+  S       D+   + +  RS S +ST   CLCSPTTH GSFRCR HR  +++R GS
Sbjct: 31  PSGSSTVESKSQDNNSPSLKRWRSSSGKSTRLNCLCSPTTHAGSFRCRYHRVDSLTRAGS 90

Query: 78  EGSNLSD-LAQKSAAVEDSMEGE 97
            GSNL+  L+ KS+   DS++ +
Sbjct: 91  IGSNLAVLLSSKSSRFSDSLKAQ 113

[Close]

BLAST of Carg25236 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-08
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 38  MTRSPSARSTCLCSPTTHVGSFRCRLHR---GTAISRGGSEGSNLSDLA 84
           M++S S R  CLC+PTTH GSFRCR HR   G  +SRG S  SNLS LA
Sbjct: 55  MSKSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSNLSMLA 103

[Close]

BLAST of Carg25236 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 45 RSTCLCSPTTHVGSFRCRLHRGTAISRGGS-EGSNLSDLAQKSA 88
          ++ CLCSPTTH GSFRCR+HR  ++ R  S E ++L D   K A
Sbjct: 41 KTNCLCSPTTHPGSFRCRIHRSLSLQRTKSIEAASLLDSPPKPA 84

[Close]

BLAST of Carg25236 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 45 RSTCLCSPTTHVGSFRCRLHRGTAISRGGS-EGSNLSDLAQKSA 88
          ++ CLCSPTTH GSFRCR+HR  ++ R  S E ++L D   K A
Sbjct: 41 KTNCLCSPTTHPGSFRCRIHRSLSLQRTKSIEAASLLDSPPKPA 84

[Close]

BLAST of Carg25236 vs. TAIR 10
Match: AT3G56500.1 (serine-rich protein-related )

HSP 1 Score: 44.3 bits (103), Expect = 6.5e-05
Identity = 17/30 (56.67%), Postives = 23/30 (76.67%), Query Frame = 0


Query: 45 RSTCLCSPTTHVGSFRCRLHRGTAISRGGS 75
          ++ C+C+PT H GSFRCRLHR +A S G +
Sbjct: 62 KTVCICAPTKHEGSFRCRLHRSSATSHGAA 91

The following BLAST results are available for this feature:

BLAST of Carg25236 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015599.1	1.1e-43	100.00	hypothetical protein SDJN02_23235, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577543.1	8.1e-42	98.94	hypothetical protein SDJN03_25117, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022143490.1	1.8e-25	62.86	uncharacterized protein LOC111013367 [Momordica charantia]	[more]
KGN55991.1	1.0e-23	63.37	hypothetical protein Csa_011649 [Cucumis sativus]	[more]
TYK19387.1	1.1e-22	61.39	putative PGPS/D10 protein [Cucumis melo var. makuwa]	[more]

BLAST of Carg25236 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25236 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNY2	8.8e-26	62.86	uncharacterized protein LOC111013367 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A0A0L7C7	4.8e-24	63.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045050 PE=4 SV=1	[more]
A0A5D3D753	5.3e-23	61.39	Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5N6L3X1	1.1e-12	46.23	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026425 PE=4 SV=1	[more]
A0A2P5ELH4	1.2e-11	44.34	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_179150 PE=4 SV...	[more]

BLAST of Carg25236 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55980.1	2.0e-09	43.37	serine-rich protein-related	[more]
AT3G13227.1	2.2e-08	61.22	serine-rich protein-related	[more]
AT1G67910.1	1.7e-05	52.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	1.7e-05	52.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G56500.1	6.5e-05	56.67	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..85
None	No IPR available	PANTHER	PTHR33132:SF48	BNACNNG68960D PROTEIN	coord: 12..92
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 12..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25236-RA	Carg25236-RA	mRNA