Carg25173 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25173
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 4240399 .. 4241307 (-)
RNA-Seq ExpressionCarg25173
SyntenyCarg25173
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTCGCTGATGCGGCTGCAGCGGCGGTAGTGTATACATTTAACAGATTTTCACTATTTTTACATTTTCTTCATTATACTTTTATTTTCATTAATAAATTCAAAATTTATGAAATTAAAGTAAAAAACATAAATTAAAAAAAAAATCTTTTTATAAATATTATTAATTATACACGTCTATATTATTTAAATATTTAAAAATACTTGAAATTTAATGGCTATGACATTCTCATGTTGTTAGACGAACACGACTCGGTATGACTCTTTTGGAGTCTTAGTCATTTTTTACTGCCTTCGAAGAGGTTTGACTCATTTTCTTTTGGAGTCGTTTGATATTTGAGGAGTTACCTATCTATCGGCACGACTAAGTTTAGGGCATCACTCTGATACTATGTTAGACGAACACACTCTCCACAATGATATGATATTATCCACTTCGAGCCTAAGCTCTCCTGGCTTTGAATCTTTTCGAAAGTAGAACAATGGTATGATATATTTAAGTTTTAAAGATTTTTATTTAATTTTAATTTTAAATGTAAGGATGTCATTTGAATCTTTTCGAAAGTAGAAGAATATTCTTTTTAGACATTAAAATTTATGGTTATTTATTAATTTAGCCTTTTAAAAAAATATTAAAATAATAAAAATTAAATATTATTTAAATTATTGCCAAATTTTCACCTTATCACCGGTCCGCAGTCGGAACTTGGCGATGGGTTTAGGTTCAACGAGTCAAACCCAGTATCGAATGGCAACCGTCAGATCGATTTGCTGACGAACAATTTTGCACATTGCGTTGGTTACACCGCCATTCTGAGAATCTGTCACTCGCAATCCCAAGCCGATTTGTTTCACGAAGACCCATTTCCCAGTCCTCCGCGGCATTCACTCTCGAAACTGGGATAA

mRNA sequence

ATGACCTTCGCTGATGCGGCTGCAGCGGCGTCGGAACTTGGCGATGGGTTTAGGTTCAACGAGTCAAACCCAGTATCGAATGGCAACCGTCAGATCGATTTGCTGACGAACAATTTTGCACATTGCGTTGGTTACACCGCCATTCTGAGAATCTGTCACTCGCAATCCCAAGCCGATTTGTTTCACGAAGACCCATTTCCCAGTCCTCCGCGGCATTCACTCTCGAAACTGGGATAA

Coding sequence (CDS)

ATGACCTTCGCTGATGCGGCTGCAGCGGCGTCGGAACTTGGCGATGGGTTTAGGTTCAACGAGTCAAACCCAGTATCGAATGGCAACCGTCAGATCGATTTGCTGACGAACAATTTTGCACATTGCGTTGGTTACACCGCCATTCTGAGAATCTGTCACTCGCAATCCCAAGCCGATTTGTTTCACGAAGACCCATTTCCCAGTCCTCCGCGGCATTCACTCTCGAAACTGGGATAA

Protein sequence

MTFADAAAAASELGDGFRFNESNPVSNGNRQIDLLTNNFAHCVGYTAILRICHSQSQADLFHEDPFPSPPRHSLSKLG
Homology
[Close]
BLAST of Carg25173 vs. NCBI nr
Match: KAG7028389.1 (hypothetical protein SDJN02_09570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.5 bits (415), Expect = 3.8e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MTFADAAAAASELGDGFRFNESNPVSNGNRQIDLLTNNFAHCVGYTAILRICHSQSQADL 60
          MTFADAAAAASELGDGFRFNESNPVSNGNRQIDLLTNNFAHCVGYTAILRICHSQSQADL
Sbjct: 1  MTFADAAAAASELGDGFRFNESNPVSNGNRQIDLLTNNFAHCVGYTAILRICHSQSQADL 60

Query: 61 FHEDPFPSPPRHSLSKLG 79
          FHEDPFPSPPRHSLSKLG
Sbjct: 61 FHEDPFPSPPRHSLSKLG 78

The following BLAST results are available for this feature:
BLAST of Carg25173 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028389.13.8e-37100.00hypothetical protein SDJN02_09570, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg25173 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25173 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25173 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25173-RACarg25173-RAmRNA