Carg25054 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25054
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Zinc finger protein
Location	Carg_Chr06: 6119558 .. 6120097 (+)
RNA-Seq Expression	Carg25054
Synteny	Carg25054

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCTCTTCACAAACAGTCAATGGCTACTTCAACAAGATAGCCAAACAGAAACAAAACAAAGCCCAAAGGACAAATCCCATCAACCTTTTACCCTCAACCTAAGCCCCAACAATGACAATGATTTGGAAGAACTCAACCTCATTGACATCTTTGGTCATGCTTGTAAAGAAGAAGCAGCTGAGCCTAGAGTTTTCTCTTGCAATTATTGCCAAAGGAAGTTTTTTAGCTCACAAGCTCTTGGTGGCCACCAAAATGCTCATAGTCGAGAGAGAAAGCTGGCTAAAGCAGGTTTTGAAGACCCTTTCATTGGATGCTATAGATCATCCTTTGGAGTTCAAACAAATTCTATGGTGCTTCGCAAGTTTTATAGGAAGCATGGAAGAGGGGAACTAGTTCGTGGGAGTTTTCGATCATGGCGCGGCGGTTGGAAGGCGTCTGCAGTCGACGTTGGGTCGTGGCATGAACAATATTCGAAGAGTACTAAACGTAATGAATCGCTCGAGCTAGAGTGTTTAGATTTGTCTCTTAAGCTGTGA

mRNA sequence

ATGAGTCTCTTCACAAACAGTCAATGGCTACTTCAACAAGATAGCCAAACAGAAACAAAACAAAGCCCAAAGGACAAATCCCATCAACCTTTTACCCTCAACCTAAGCCCCAACAATGACAATGATTTGGAAGAACTCAACCTCATTGACATCTTTGGTCATGCTTGTAAAGAAGAAGCAGCTGAGCCTAGAGTTTTCTCTTGCAATTATTGCCAAAGGAAGTTTTTTAGCTCACAAGCTCTTGGTGGCCACCAAAATGCTCATAGTCGAGAGAGAAAGCTGGCTAAAGCAGGTTTTGAAGACCCTTTCATTGGATGCTATAGATCATCCTTTGGAGTTCAAACAAATTCTATGGTGCTTCGCAAGTTTTATAGGAAGCATGGAAGAGGGGAACTAGTTCGTGGGAGTTTTCGATCATGGCGCGGCGGTTGGAAGGCGTCTGCAGTCGACGTTGGGTCGTGGCATGAACAATATTCGAAGAGTACTAAACGTAATGAATCGCTCGAGCTAGAGTGTTTAGATTTGTCTCTTAAGCTGTGA

Coding sequence (CDS)

ATGAGTCTCTTCACAAACAGTCAATGGCTACTTCAACAAGATAGCCAAACAGAAACAAAACAAAGCCCAAAGGACAAATCCCATCAACCTTTTACCCTCAACCTAAGCCCCAACAATGACAATGATTTGGAAGAACTCAACCTCATTGACATCTTTGGTCATGCTTGTAAAGAAGAAGCAGCTGAGCCTAGAGTTTTCTCTTGCAATTATTGCCAAAGGAAGTTTTTTAGCTCACAAGCTCTTGGTGGCCACCAAAATGCTCATAGTCGAGAGAGAAAGCTGGCTAAAGCAGGTTTTGAAGACCCTTTCATTGGATGCTATAGATCATCCTTTGGAGTTCAAACAAATTCTATGGTGCTTCGCAAGTTTTATAGGAAGCATGGAAGAGGGGAACTAGTTCGTGGGAGTTTTCGATCATGGCGCGGCGGTTGGAAGGCGTCTGCAGTCGACGTTGGGTCGTGGCATGAACAATATTCGAAGAGTACTAAACGTAATGAATCGCTCGAGCTAGAGTGTTTAGATTTGTCTCTTAAGCTGTGA

Protein sequence

MSLFTNSQWLLQQDSQTETKQSPKDKSHQPFTLNLSPNNDNDLEELNLIDIFGHACKEEAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFEDPFIGCYRSSFGVQTNSMVLRKFYRKHGRGELVRGSFRSWRGGWKASAVDVGSWHEQYSKSTKRNESLELECLDLSLKL

Homology

[Close]

BLAST of Carg25054 vs. NCBI nr
Match: KAG7028483.1 (Zinc finger protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 367.9 bits (943), Expect = 5.1e-98
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MSLFTNSQWLLQQDSQTETKQSPKDKSHQPFTLNLSPNNDNDLEELNLIDIFGHACKEEA 60
           MSLFTNSQWLLQQDSQTETKQSPKDKSHQPFTLNLSPNNDNDLEELNLIDIFGHACKEEA
Sbjct: 1   MSLFTNSQWLLQQDSQTETKQSPKDKSHQPFTLNLSPNNDNDLEELNLIDIFGHACKEEA 60

Query: 61  AEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFEDPFIGCYRSSFGVQTNSMVL 120
           AEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFEDPFIGCYRSSFGVQTNSMVL
Sbjct: 61  AEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFEDPFIGCYRSSFGVQTNSMVL 120

Query: 121 RKFYRKHGRGELVRGSFRSWRGGWKASAVDVGSWHEQYSKSTKRNESLELECLDLSLKL 180
           RKFYRKHGRGELVRGSFRSWRGGWKASAVDVGSWHEQYSKSTKRNESLELECLDLSLKL
Sbjct: 121 RKFYRKHGRGELVRGSFRSWRGGWKASAVDVGSWHEQYSKSTKRNESLELECLDLSLKL 179

[Close]

BLAST of Carg25054 vs. NCBI nr
Match: KAG6607668.1 (Zinc finger protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 357.1 bits (915), Expect = 9.1e-95
Identity = 175/179 (97.77%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MSLFTNSQWLLQQDSQTETKQSPKDKSHQPFTLNLSPNNDNDLEELNLIDIFGHACKEEA 60
           MSLFTNSQWLLQQDSQTETKQSPKDKSHQPFTLNL PNNDNDLEELNLIDIFGHACKEEA
Sbjct: 1   MSLFTNSQWLLQQDSQTETKQSPKDKSHQPFTLNLCPNNDNDLEELNLIDIFGHACKEEA 60

Query: 61  AEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFEDPFIGCYRSSFGVQTNSMVL 120
           AEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFEDPF G YRSSFGVQTNSMVL
Sbjct: 61  AEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFEDPFHGSYRSSFGVQTNSMVL 120

Query: 121 RKFYRKHGRGELVRGSFRSWRGGWKASAVDVGSWHEQYSKSTKRNESLELECLDLSLKL 180
           RKFYRKHGRGELVRGSFRSWRGGWKASAVDVG WHEQYSKSTKRNESLELECLDLSLKL
Sbjct: 121 RKFYRKHGRGELVRGSFRSWRGGWKASAVDVGLWHEQYSKSTKRNESLELECLDLSLKL 179

[Close]

BLAST of Carg25054 vs. NCBI nr
Match: KAF8407216.1 (hypothetical protein HHK36_006343 [Tetracentron sinense])

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-15
Identity = 57/138 (41.30%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 14  DSQTETKQSPKDKSHQ-PFTLNLSPNNDNDL--EELNLIDIFGHACKEEAA--EPRVFSC 73
           + Q + K+  ++ +H     L+LS  + N +   ELNLI+ F   C + A+  EPRVFSC
Sbjct: 33  EKQKQEKEEEEEINHDLLLDLSLSTKHSNHITRPELNLINCFKVGCSQTASKTEPRVFSC 92

Query: 74  NYCQRKFFSSQALGGHQNAHSRERKLAKAGFED----------------------PFIGC 125
           NYCQRKF+SSQALGGHQNAH RER LAK G +                       P  G 
Sbjct: 93  NYCQRKFYSSQALGGHQNAHKRERTLAKKGHQKEAAVAFGHRHLYRHMFSRMASVPLHGG 152

[Close]

BLAST of Carg25054 vs. NCBI nr
Match: XP_038896249.1 (zinc finger protein 3-like [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-15
Identity = 78/220 (35.45%), Postives = 95/220 (43.18%), Query Frame = 0


Query: 24  KDKSHQPFTLNLSPNNDNDL------EELNLIDIFG----------HACKEEAAEPRVFS 83
           KD S +  +L+L  +N  DL      EELNL+D F              +E AA+PRVFS
Sbjct: 31  KDTSPELVSLDLKLSN-KDLGGSLMPEELNLVDSFDADNLPNDRSYQGVEEAAAKPRVFS 90

Query: 84  CNYCQRKFFSSQALGGHQNAHSRERKLAKAGFE---------------DPFIGCYRSSFG 143
           CNYC RKFFSSQALGGHQNAHSRERK+AK G +                P  G +  S G
Sbjct: 91  CNYCPRKFFSSQALGGHQNAHSRERKIAKTGNKLVTNSTGSKYSSVPSLPLQG-FNGSVG 150

Query: 144 VQTNSMVLRKFYRKHGRGELVRGSFRSWRGGWKASAVDVGSW--HEQYSKSTK------- 180
           +Q  S++ + F      G L       W      + V  G W   E Y   T        
Sbjct: 151 IQARSLIHKPFSHSPFFGSLHPFQLEVWSRQSLYTQVAAGQWPSPENYLSGTSPVPPSSS 210

[Close]

BLAST of Carg25054 vs. NCBI nr
Match: XP_023548450.1 (zinc finger protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-14
Identity = 84/235 (35.74%), Postives = 105/235 (44.68%), Query Frame = 0


Query: 14  DSQTETKQSPKDKSHQPFTLNLSPNNDN-DL------EELNLIDIF---------GHACK 73
           DS  E K     K   P  ++L P+  N DL      EELNLID F          H  K
Sbjct: 2   DSPPEIKDPSDSKDISPGLVSLDPSLSNKDLGGSLMPEELNLIDFFSADNLPNDTSHEGK 61

Query: 74  EEAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFE---------------DP 133
           E AA+PRVFSCN+C R+F SSQALGGHQNAH+R+RK+A+ G +                P
Sbjct: 62  EAAAKPRVFSCNFCPREFSSSQALGGHQNAHNRKRKMAQTGHKLVTNSTDCKQSSVSSLP 121

Query: 134 FIGCYRSSFGVQTNSMVLRKFYRKHGRGELVRGSFRSWR---------------GGWKAS 180
           F G +  S G+Q +SM+ + F   H     V GSFRS+                G W  S
Sbjct: 122 FQG-FNRSLGIQMHSMIHKPF--SHAP---VFGSFRSFESKVWDRQPLYTQVASGIWPLS 181

[Close]

BLAST of Carg25054 vs. ExPASy Swiss-Prot
Match: Q42485 (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-14
Identity = 46/86 (53.49%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 24  KDKSHQPFTLNLS--PNNDNDLEELNLIDIFGHAC---------KEEAAEPRVFSCNYCQ 83
           K + HQ   L L+          ELNLID F  +          +E+ A+PRVFSCNYCQ
Sbjct: 15  KKQGHQDLELGLTLLSRGTATSSELNLIDSFKTSSSSTSHHQHQQEQLADPRVFSCNYCQ 74

Query: 84  RKFFSSQALGGHQNAHSRERKLAKAG 99
           RKF+SSQALGGHQNAH RER LAK G
Sbjct: 75  RKFYSSQALGGHQNAHKRERTLAKRG 100

[Close]

BLAST of Carg25054 vs. ExPASy Swiss-Prot
Match: Q39263 (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 5.3e-13
Identity = 60/157 (38.22%), Postives = 74/157 (47.13%), Query Frame = 0


Query: 15  SQTETKQSPKDKSHQPFTLNLS------PNNDNDLEELNLIDIFGHAC----------KE 74
           SQ  +  SP  + ++P +LNLS       NN+ DLE  +L                  ++
Sbjct: 18  SQVASNLSPVGEDYKPISLNLSLSFNNNNNNNLDLESSSLTLPLSSTSESSNPEQQQQQQ 77

Query: 75  EAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAK----AGFEDPFIGCYRSSFGVQ 134
            +   RVFSCNYCQRKF+SSQALGGHQNAH RER LAK     G    F G   SS    
Sbjct: 78  PSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAA 137

Query: 135 TNSMVLRKFYRKHGRGELVRGSFRSWRGGWKASAVDV 152
             +         HG G     SFR+      +SA DV
Sbjct: 138 AATAAALSCLPLHGSGNGNMTSFRTLGIRAHSSAHDV 174

[Close]

BLAST of Carg25054 vs. ExPASy Swiss-Prot
Match: Q39262 (Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11
Identity = 36/63 (57.14%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 41 NDLEELNLIDIFGHAC-----KEEAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLA 99
          N   ELNLID              + E ++FSCNYCQR F+SSQALGGHQNAH RER LA
Sbjct: 31 NSSHELNLIDCIDDTTSIVNESTTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLA 90

[Close]

BLAST of Carg25054 vs. ExPASy Swiss-Prot
Match: Q39266 (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-11
Identity = 42/85 (49.41%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 14 DSQTETKQSPKDKSHQPFTLNLSPNNDNDLEELNLIDIFGHACKEEAAE--PRVFSCNYC 73
          D+  ET  S   ++     L+   +N   L +L L D F    K    E  PRVFSCNYC
Sbjct: 6  DASRETPASRGGEASSNQDLSKPESNHVSL-DLKLNDTFNDDTKSTKCEANPRVFSCNYC 65

Query: 74 QRKFFSSQALGGHQNAHSRERKLAK 97
          +RKF+SSQALGGHQNAH RER +AK
Sbjct: 66 RRKFYSSQALGGHQNAHKRERTMAK 89

[Close]

BLAST of Carg25054 vs. ExPASy Swiss-Prot
Match: Q39261 (Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-11
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 62  EPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFE 101
           +PRVFSCNYCQRKF+SSQALGGHQNAH  ER LAK   E
Sbjct: 48  QPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRE 86

[Close]

BLAST of Carg25054 vs. ExPASy TrEMBL
Match: A0A5N6QD63 (C2H2-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_001890 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-14
Identity = 56/129 (43.41%), Postives = 74/129 (57.36%), Query Frame = 0


Query: 19  TKQSPKDKSHQPFTLNLSPNNDN--DLEELNLIDIF-GHACKEEAAEPRVFSCNYCQRKF 78
           TK+  + +      L+LS  + N   + ELNLID F  ++ +    EPRVFSCNYCQRKF
Sbjct: 30  TKEGKRQEKDLLLDLSLSSKDSNGGSMPELNLIDSFVVNSPQGNETEPRVFSCNYCQRKF 89

Query: 79  FSSQALGGHQNAHSRERKLAK------AGFED--------PFIGCYRSSFGVQTNSMVLR 131
           +SSQALGGHQNAH RER LAK      AGF +        P  G +  S G+Q +SM+ +
Sbjct: 90  YSSQALGGHQNAHKRERTLAKRGQKISAGFGNRYPIMASLPLHGSFNRSLGIQVHSMIQK 149

[Close]

BLAST of Carg25054 vs. ExPASy TrEMBL
Match: A0A2R6QMR5 (Zinc finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc15471 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-14
Identity = 63/169 (37.28%), Postives = 85/169 (50.30%), Query Frame = 0


Query: 12  QQDSQTETKQSPKDKSHQPFTLNLSPNNDNDLEELNLIDIFGHAC--------KEEAAEP 71
           ++D++ E ++  +++  Q   L ++P+  N   ELNLID   +          +E  AEP
Sbjct: 33  KEDTREEREKEEEEEEDQ--ELEMTPDKFN--PELNLIDCLNNDSTQTSPEIPQESDAEP 92

Query: 72  RVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFED---------------------- 131
           RVFSCNYCQRKFFSSQALGGHQNAH RER LAK G +                       
Sbjct: 93  RVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRGLKIGSPRGHSHAYHHHHHYSSMSSL 152

Query: 132 PFIGCYRSSFGVQTNSMVLRKFYRKHGRGELVRGSFRSWRGGWKASAVD 151
           P  G Y  S G+Q +SM+ +  Y     G  +RG +     GW    +D
Sbjct: 153 PLHGAYNRSLGIQVHSMIHKPSYIPSSSG--IRGIY--GHSGWFRHPID 193

[Close]

BLAST of Carg25054 vs. ExPASy TrEMBL
Match: A0A6P3Z4Q7 (zinc finger protein 1 OS=Ziziphus jujuba OX=326968 GN=LOC107408857 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-14
Identity = 62/172 (36.05%), Postives = 80/172 (46.51%), Query Frame = 0


Query: 14  DSQTETKQSPKDKSHQPFTLNLSPNNDNDLEELNLIDIF------------GHACKEEAA 73
           D +   K   + K+     L+LS +N++   ELNLID F             H  +    
Sbjct: 69  DHEDHNKHQEESKNSH-LVLDLSLSNEDSKPELNLIDSFESNSSRNSSDTDTHPHQGNET 128

Query: 74  EPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFED-------------------- 133
           EPRVFSCNYCQRKF+SSQALGGHQNAH RER LAK G +                     
Sbjct: 129 EPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKIGIASTAFGFPTSLPHRYSSI 188

Query: 134 ---PFIGCYRSSFGVQTNSMVLRKFYRKHGRGELVRGSFRSWRGGWKASAVD 151
              P  G +  S G+Q +SM+ +  Y+ +     V  S    R GW    +D
Sbjct: 189 ASLPLHGSFNKSLGIQVHSMIHKPAYQPN--TNTVATSHLYGRNGWLRFPID 237

[Close]

BLAST of Carg25054 vs. ExPASy TrEMBL
Match: A0A6A3A4R5 (Zinc finger protein 7 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110580pilonHSYRG00028 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14
Identity = 56/150 (37.33%), Postives = 74/150 (49.33%), Query Frame = 0


Query: 14  DSQTETKQSPKDKSHQPFTLNLSPNNDNDLEELNLIDIF--------GHACKEEAAEPRV 73
           D+  + ++ P+ K      L+L  +N     ELN +D F            +    EPRV
Sbjct: 27  DTTPKEEKKPQVKEEDHLVLDLRLSNQESNPELNFVDCFKVVDSSSDHDQDQGNEPEPRV 86

Query: 74  FSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFEDPFI--GCYRSSFGVQTNSMVLRKF 133
           FSCNYCQRKFFSSQALGGHQNAH RER LA+ G   P +  G     +    +  +   F
Sbjct: 87  FSCNYCQRKFFSSQALGGHQNAHKRERTLARQGHRFPGVHFGYPNGRYYSMASLPLYSSF 146

Query: 134 YRKHGRGE---LVRGSFRSWRGGWKASAVD 151
            +  G GE   + + +F  W  GW    VD
Sbjct: 147 NKPLGVGEHSMIHKPTFAPWHNGWSRRPVD 176

[Close]

BLAST of Carg25054 vs. ExPASy TrEMBL
Match: A0A2K3N626 (Zinc finger protein 3-like OS=Trifolium pratense OX=57577 GN=L195_g021697 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14
Identity = 58/151 (38.41%), Postives = 76/151 (50.33%), Query Frame = 0


Query: 18  ETKQSPKDKSHQPFTLNLSPN---NDNDLEELNLIDIFGHACKEEAAE---------PRV 77
           +TK   +        L+LS     +D   +ELNL++ F     E ++E         PRV
Sbjct: 2   DTKHKNESSPQLVLDLSLSSKDSCDDESKQELNLLNCFHANLSESSSESSLDPNELDPRV 61

Query: 78  FSCNYCQRKFFSSQALGGHQNAHSRERKLAKAGFEDPF------IGCYRSSFGVQTNSMV 137
           FSCNYCQRKF+SSQALGGHQNAH RER LA+ G+           G    S G+Q +SM+
Sbjct: 62  FSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYTTSMPSSMSSYGLCNKSLGIQVHSMI 121

Query: 138 LRKFYRKHGRGELVRGSFRSWRGGWKASAVD 151
            +  Y+K   G    G     + GWK    D
Sbjct: 122 NKPSYQKPFFGFCSNG-----QNGWKRQNFD 147

[Close]

BLAST of Carg25054 vs. TAIR 10
Match: AT1G80730.1 (zinc-finger protein 1 )

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-15
Identity = 46/86 (53.49%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 24  KDKSHQPFTLNLS--PNNDNDLEELNLIDIFGHAC---------KEEAAEPRVFSCNYCQ 83
           K + HQ   L L+          ELNLID F  +          +E+ A+PRVFSCNYCQ
Sbjct: 15  KKQGHQDLELGLTLLSRGTATSSELNLIDSFKTSSSSTSHHQHQQEQLADPRVFSCNYCQ 74

Query: 84  RKFFSSQALGGHQNAHSRERKLAKAG 99
           RKF+SSQALGGHQNAH RER LAK G
Sbjct: 75  RKFYSSQALGGHQNAHKRERTLAKRG 100

[Close]

BLAST of Carg25054 vs. TAIR 10
Match: AT1G66140.1 (zinc finger protein 4 )

HSP 1 Score: 75.9 bits (185), Expect = 3.8e-14
Identity = 60/157 (38.22%), Postives = 74/157 (47.13%), Query Frame = 0


Query: 15  SQTETKQSPKDKSHQPFTLNLS------PNNDNDLEELNLIDIFGHAC----------KE 74
           SQ  +  SP  + ++P +LNLS       NN+ DLE  +L                  ++
Sbjct: 18  SQVASNLSPVGEDYKPISLNLSLSFNNNNNNNLDLESSSLTLPLSSTSESSNPEQQQQQQ 77

Query: 75  EAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAK----AGFEDPFIGCYRSSFGVQ 134
            +   RVFSCNYCQRKF+SSQALGGHQNAH RER LAK     G    F G   SS    
Sbjct: 78  PSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAA 137

Query: 135 TNSMVLRKFYRKHGRGELVRGSFRSWRGGWKASAVDV 152
             +         HG G     SFR+      +SA DV
Sbjct: 138 AATAAALSCLPLHGSGNGNMTSFRTLGIRAHSSAHDV 174

[Close]

BLAST of Carg25054 vs. TAIR 10
Match: AT5G25160.1 (zinc finger protein 3 )

HSP 1 Score: 71.2 bits (173), Expect = 9.2e-13
Identity = 36/63 (57.14%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 41 NDLEELNLIDIFGHAC-----KEEAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLA 99
          N   ELNLID              + E ++FSCNYCQR F+SSQALGGHQNAH RER LA
Sbjct: 31 NSSHELNLIDCIDDTTSIVNESTTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLA 90

[Close]

BLAST of Carg25054 vs. TAIR 10
Match: AT1G24625.1 (zinc finger protein 7 )

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12
Identity = 42/85 (49.41%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 14 DSQTETKQSPKDKSHQPFTLNLSPNNDNDLEELNLIDIFGHACKEEAAE--PRVFSCNYC 73
          D+  ET  S   ++     L+   +N   L +L L D F    K    E  PRVFSCNYC
Sbjct: 6  DASRETPASRGGEASSNQDLSKPESNHVSL-DLKLNDTFNDDTKSTKCEANPRVFSCNYC 65

Query: 74 QRKFFSSQALGGHQNAHSRERKLAK 97
          +RKF+SSQALGGHQNAH RER +AK
Sbjct: 66 RRKFYSSQALGGHQNAHKRERTMAK 89

[Close]

BLAST of Carg25054 vs. TAIR 10
Match: AT5G10970.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-12
Identity = 42/97 (43.30%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 44  EELNLIDIFGHAC------KEEAAEPRVFSCNYCQRKFFSSQALGGHQNAHSRERKLAKA 103
           +ELNL+D               + E ++FSCNYCQR F+SSQALGGHQNAH RER LAK 
Sbjct: 76  QELNLLDCLETGVVTPSFNGSTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKR 135

Query: 104 G---------------FEDPFIGCYRS-SFGVQTNSM 119
           G                  PF G Y + + G+Q +SM
Sbjct: 136 GQRMASAAAFGHPYGFAPVPFHGQYSNRTLGIQAHSM 172

The following BLAST results are available for this feature:

BLAST of Carg25054 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028483.1	5.1e-98	100.00	Zinc finger protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6607668.1	9.1e-95	97.77	Zinc finger protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAF8407216.1	3.2e-15	41.30	hypothetical protein HHK36_006343 [Tetracentron sinense]	[more]
XP_038896249.1	7.1e-15	35.45	zinc finger protein 3-like [Benincasa hispida]	[more]
XP_023548450.1	1.2e-14	35.74	zinc finger protein 3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg25054 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42485	1.6e-14	53.49	Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1	[more]
Q39263	5.3e-13	38.22	Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2	[more]
Q39262	1.3e-11	57.14	Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1	[more]
Q39266	2.2e-11	49.41	Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1	[more]
Q39261	6.5e-11	79.49	Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1	[more]

BLAST of Carg25054 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6QD63	1.0e-14	43.41	C2H2-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_0018...	[more]
A0A2R6QMR5	1.0e-14	37.28	Zinc finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Ac...	[more]
A0A6P3Z4Q7	1.3e-14	36.05	zinc finger protein 1 OS=Ziziphus jujuba OX=326968 GN=LOC107408857 PE=4 SV=1	[more]
A0A6A3A4R5	1.7e-14	37.33	Zinc finger protein 7 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110580pilonHS...	[more]
A0A2K3N626	1.7e-14	38.41	Zinc finger protein 3-like OS=Trifolium pratense OX=57577 GN=L195_g021697 PE=4 S...	[more]

BLAST of Carg25054 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80730.1	1.2e-15	53.49	zinc-finger protein 1	[more]
AT1G66140.1	3.8e-14	38.22	zinc finger protein 4	[more]
AT5G25160.1	9.2e-13	57.14	zinc finger protein 3	[more]
AT1G24625.1	1.6e-12	49.41	zinc finger protein 7	[more]
AT5G10970.1	2.7e-12	43.30	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 50..101 e-value: 7.7E-6 score: 27.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..38
None	No IPR available	PANTHER	PTHR47287:SF1	ZINC FINGER PROTEIN 1-LIKE	coord: 13..98
IPR044246	Zinc finger protein 3-like	PANTHER	PTHR47287	C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN	coord: 13..98
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 68..88
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 66..93 score: 11.759394
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 63..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25054-RA	Carg25054-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009788	negative regulation of abscisic acid-activated signaling pathway