Carg25025 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25025
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L18
Location	Carg_Chr11: 6272146 .. 6273942 (-)
RNA-Seq Expression	Carg25025
Synteny	Carg25025

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTTAAACCCTTCGCTCTACCCTTCTCCTTCATTTCTTTCACAGCCGCTTGCCGGAACGCTCCACCGCCGATCTTCTTTCGTCTCTGCTGCAACCTCACGCCAACACCAACCCCGTCTTTCGTCGAGGTCTTCCCGGATCTAAACTCTTCTTTTTCCTTTCATCTTTTTTGTTTCGTCCATTCAACCAAACTCAACACTGGGTAAATTTGAAATTAGGTTCATGAAATGATTTCGAATCCTTTCGAACTGTGGGTTAGAATACTGTTAGTTTTAAGATGCATTTAATCTAATCTTAGTTTTTACTAATGGAATTCGTTGAAATCTGTTTTTCTTTTTTTTTTAGAATATTGTTGAATGTATTAGGAAAAAATTCGAATGTGCTATATTGAACTTGGATTCATGTTTATAAGGGTAGTGGCGAACAGATTTCGAACCCGTAGACAACCACTTTGCAGTGGCCCTATTCAGTAATTTTTCCCCAATTTTAGGTTTCAGTGTGACAATCGTCATCTTTGCCTCTTTGGATTTTCTCTTTCGGAGTTTTTCTCAAGACTTTAAAATTAGTCTTTAGGGGGAGGTTTTCACACTCTTATAAATGGTGTTTTATTCTCCTCCTCAATTAAGGACGGACATCACAATCCACCCCTTTCGGCCCGGCGTCCTCACTGGCACTCTTTCCTTCCTCCAATCGATGTGGGACCGCCCCAAATCCACCCTCTTCAGGGCCTAGCATCCTTACTGGCACACCGCCTCATGTCTACCCCTTTCGGGGAACAGCGAGAAAGCTGACACATCGTCCAGGGTCTGGCTCTAATACGATTTGTAACGACACAAATCCACTACTAGCAGATATTGTTCTCTTTGAGCTTTTGCTTTCGAGCTTCCCCACAAGACTCTAAAACGCGTCCATACTCTCCTCTCCAACCAACGTGGGACATCACATTCAGCCTTTGGAAATTGAACATTAGAAGGCCAGATTTCTTGAAACTGAACCAATAGATCCAATCCAACCAGTGTAGTTGAAATCTGGATTTGCCCAATCAAGTTCATTGGTTTGGTAATGGTTCTCCATTTTCACTGACCAATGATATGGTTTCATTATTGGTTTAGCGTTATGAATGGGTCCCATTTTAATTTTTGTGAAGAACAGATAGCATTTGTCTCTGCTTATTAGATAGTATATCAAAACCATTGCCCATTGCCATTATTATGAAAGCTATGTAAGGGATTTTAAACTTTAAAGCATGATATAAATGGTGGTTAACCATACTTATTATTGAACTCACTAGTTGGTAGCTTAGCTTAAGCTTGAGAAGATTGAAGATCCTAAGATTCATCTTTGTTTATGTCATTTAGAGTAAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTTGGCTGCAAGCTCGCAGGAGAAGGCGCTGCGGCCGAGCATGGAGTCAACAAGGGATGTGGCTGCTGCTGCTGCTGCAAAGATCGGGAAATTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACACAAGTATCATGGTAAGATCAAAGCTGTTATTGACTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGAATTCACTGCTCAATATTATGTGAGTTTGATGATTAGTGAGAGTAGTGTTGTTAGGTGAAGGTGTCATACGAGCATTTTTGGGAAATAAACAATAAT

mRNA sequence

AACTTAAACCCTTCGCTCTACCCTTCTCCTTCATTTCTTTCACAGCCGCTTGCCGGAACGCTCCACCGCCGATCTTCTTTCGTCTCTGCTGCAACCTCACGCCAACACCAACCCCGTCTTTCGTCGAGAGTAAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTTGGCTGCAAGCTCGCAGGAGAAGGCGCTGCGGCCGAGCATGGAGTCAACAAGGGATGTGGCTGCTGCTGCTGCTGCAAAGATCGGGAAATTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACACAAGTATCATGGTAAGATCAAAGCTGTTATTGACTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGAATTCACTGCTCAATATTATGTGAGTTTGATGATTAGTGAGAGTAGTGTTGTTAGGTGAAGGTGTCATACGAGCATTTTTGGGAAATAAACAATAAT

Coding sequence (CDS)

AACTTAAACCCTTCGCTCTACCCTTCTCCTTCATTTCTTTCACAGCCGCTTGCCGGAACGCTCCACCGCCGATCTTCTTTCGTCTCTGCTGCAACCTCACGCCAACACCAACCCCGTCTTTCGTCGAGAGTAAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGCGCGCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTTGGCTGCAAGCTCGCAGGAGAAGGCGCTGCGGCCGAGCATGGAGTCAACAAGGGATGTGGCTGCTGCTGCTGCTGCAAAGATCGGGAAATTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACACAAGTATCATGGTAAGATCAAAGCTGTTATTGACTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGA

Protein sequence

NLNPSLYPSPSFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL

Homology

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BLAST of Carg25025 vs. NCBI nr
Match: KAG7022317.1 (rplR, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   NLNPSLYPSPSFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQ 60
           NLNPSLYPSPSFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQ
Sbjct: 1   NLNPSLYPSPSFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQ 60

Query: 61  YLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKL 120
           YLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKL
Sbjct: 61  YLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKL 120

Query: 121 LKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           LKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL
Sbjct: 121 LKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 156

[Close]

BLAST of Carg25025 vs. NCBI nr
Match: KAG6588487.1 (hypothetical protein SDJN03_17052, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 259.2 bits (661), Expect = 2.2e-65
Identity = 139/146 (95.21%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 11  SFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMH 70
           S +  PLAGTLHRRSSFVSAATSRQHQ RLSSRVREMVIPPPVRPPRLTQYLKPYVLKMH
Sbjct: 2   SIMLNPLAGTLHRRSSFVSAATSRQHQRRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMH 61

Query: 71  FTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLLKGIPAVCVH 130
           FTNKYVSAQVIHSETATVA AASSQEKALRPSMESTRDVAAAAAAKIGKLLKGIPAVCVH
Sbjct: 62  FTNKYVSAQVIHSETATVASAASSQEKALRPSMESTRDVAAAAAAKIGKLLKGIPAVCVH 121

Query: 131 LKREHKYHGKIKAVIDSVREAGIKLL 157
           LKRE KYHGKIKAVIDSVREAGIKLL
Sbjct: 122 LKREQKYHGKIKAVIDSVREAGIKLL 147

[Close]

BLAST of Carg25025 vs. NCBI nr
Match: XP_022970166.1 (uncharacterized protein LOC111469142 [Cucurbita maxima] >XP_022970175.1 uncharacterized protein LOC111469142 [Cucurbita maxima])

HSP 1 Score: 188.3 bits (477), Expect = 4.9e-44
Identity = 104/116 (89.66%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+A AASSQEKALRPSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 60

Query: 107 RDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAA KIGK      LLKGIPAVCVHLKRE KYHGKIKAVIDSVREAGIKLL
Sbjct: 61  RDV--AAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 114

[Close]

BLAST of Carg25025 vs. NCBI nr
Match: KAG6590442.1 (hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023978.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.4 bits (472), Expect = 1.8e-43
Identity = 103/116 (88.79%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVA AASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 107 RDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAAAKIGKL      LKGIPAVCVHLKRE KYHGK+KAV+DSVREAGIKLL
Sbjct: 61  RDV--AAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Carg25025 vs. NCBI nr
Match: XP_022961444.1 (uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 uncharacterized protein LOC111462025 [Cucurbita moschata])

HSP 1 Score: 186.4 bits (472), Expect = 1.8e-43
Identity = 103/116 (88.79%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVA AASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 107 RDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAAAKIGKL      LKGIPAVCVHLKRE KYHGK+KAV+DSVREAGIKLL
Sbjct: 61  RDV--AAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Carg25025 vs. ExPASy Swiss-Prot
Match: A8IAP8 (50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=rplR PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.4e-07
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 67  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLL----- 126
           L +H T+K++ AQ+I        +AASS EK LR S+++  DV AA A  IGKL+     
Sbjct: 29  LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAAKA--IGKLVAERAT 88

Query: 127 -KGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK 155
            KG+ AV V  +  + YHG++KA+ +  RE G++
Sbjct: 89  AKGVTAV-VFDRGAYIYHGRVKALAEGAREGGLQ 119

[Close]

BLAST of Carg25025 vs. ExPASy Swiss-Prot
Match: P52863 (50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.2e-06
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 67  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------L 126
           L +H T ++V AQVI S  + V  AAS+ EKA+R  +++T +V AA A  +GK      L
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKA--VGKAIAERAL 85

Query: 127 LKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK 155
            KG+  V    +   +YHG++ A+ +S REAG+K
Sbjct: 86  EKGVETVAFD-RSGFQYHGRVAALAESAREAGLK 116

[Close]

BLAST of Carg25025 vs. ExPASy Swiss-Prot
Match: B7VLE1 (50S ribosomal protein L18 OS=Vibrio atlanticus (strain LGP32) OX=575788 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.5e-06
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 67  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------L 126
           L +H T ++V AQVI +  + V  AAS+ EKA+R  +++T +V AA A  +GK      L
Sbjct: 26  LVVHRTPRHVYAQVISANGSEVIAAASTVEKAIREQVKNTGNVDAAKA--VGKAVAERAL 85

Query: 127 LKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK 155
            KG+ +V    +   +YHG++ A+ +S REAG+K
Sbjct: 86  EKGVASVAFD-RSGFQYHGRVAALAESAREAGLK 116

[Close]

BLAST of Carg25025 vs. ExPASy Swiss-Prot
Match: Q5E898 (50S ribosomal protein L18 OS=Aliivibrio fischeri (strain ATCC 700601 / ES114) OX=312309 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.1e-06
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 67  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLL----- 126
           L +H T ++  AQVI    + V  AAS+ EKA+R  + ST + AAA A  IGKL+     
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQLGSTSNKAAAEA--IGKLIAERAI 85

Query: 127 -KGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK 155
            KGI  V    +   +YHG++ A+ +S REAG+K
Sbjct: 86  EKGITNVAFD-RSGFQYHGRVAALAESAREAGLK 116

[Close]

BLAST of Carg25025 vs. ExPASy Swiss-Prot
Match: A7MWH4 (50S ribosomal protein L18 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX=338187 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.1e-06
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 67  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------L 126
           L +H T ++V AQVI +  + V  AAS+ EKA+R  ++ T +V AA A  +GK      L
Sbjct: 26  LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNVDAAKA--VGKAVAERAL 85

Query: 127 LKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK 155
            KG+ AV    +   +YHG++ A+ +S REAG+K
Sbjct: 86  EKGVTAVAFD-RSGFQYHGRVAALAESAREAGLK 116

[Close]

BLAST of Carg25025 vs. ExPASy TrEMBL
Match: A0A6J1HZV8 (uncharacterized protein LOC111469142 OS=Cucurbita maxima OX=3661 GN=LOC111469142 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.4e-44
Identity = 104/116 (89.66%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+A AASSQEKALRPSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATIASAASSQEKALRPSMEST 60

Query: 107 RDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAA KIGK      LLKGIPAVCVHLKRE KYHGKIKAVIDSVREAGIKLL
Sbjct: 61  RDV--AAAVKIGKLLGERLLLKGIPAVCVHLKREQKYHGKIKAVIDSVREAGIKLL 114

[Close]

BLAST of Carg25025 vs. ExPASy TrEMBL
Match: A0A6J1HE21 (uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC111462025 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 8.9e-44
Identity = 103/116 (88.79%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVA AASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 107 RDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAAAKIGKL      LKGIPAVCVHLKRE KYHGK+KAV+DSVREAGIKLL
Sbjct: 61  RDV--AAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Carg25025 vs. ExPASy TrEMBL
Match: A0A6J1I0R8 (uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.6e-43
Identity = 102/116 (87.93%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVA AASSQEK LR SMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 107 RDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAAAKIGKL      LKGIPAVCVHLKRE KYHGK+KAV+DSVREAGIKLL
Sbjct: 61  RDV--AAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Carg25025 vs. ExPASy TrEMBL
Match: A0A6J1CWR7 (uncharacterized protein LOC111015286 OS=Momordica charantia OX=3673 GN=LOC111015286 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.2e-42
Identity = 100/116 (86.21%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVA AASSQEKALR SMEST
Sbjct: 1   MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMEST 60

Query: 107 RDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAAAKIGK      LLKGIPAVCVHLKRE KYHGK+KAV+DSVREAGIKLL
Sbjct: 61  RDV--AAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Carg25025 vs. ExPASy TrEMBL
Match: A0A5D3DYC1 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00840 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.9e-42
Identity = 100/116 (86.21%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPPP++PPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVA AASSQEKALR SMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 107 RDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAAAKIGK      LLKGIPAVCVHLKRE KYHGK+KAVIDSVREAGIKLL
Sbjct: 61  RDV--AAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of Carg25025 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-37
Identity = 84/116 (72.41%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 47  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMEST 106
           MVIPP VRPPRL  YLKPYVLKMHFTNK+V AQVIHS TATVA +ASSQEKALR +M+ T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 107 RDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL 157
           RDV  AAA+KIGK      L+K IPAV + +K+E +YHGK+KAVIDSVREAG+KLL
Sbjct: 61  RDV--AAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114

[Close]

BLAST of Carg25025 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 47.8 bits (112), Expect = 9.5e-06
Identity = 40/149 (26.85%), Postives = 74/149 (49.66%), Query Frame = 0


Query: 11  SFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMH 70
           S +S P+     ++ SFV AA +R+ +   + R             R   Y++P++L + 
Sbjct: 46  SVISSPIV----KKDSFVQAAWTRRSRGEAAKRPNR-----KSWKQRTDMYMRPFLLNVF 105

Query: 71  FTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGI 130
           F+ K++ A+V+H  T+ V   A++  + +R ++ S  D    A   IGKL+        +
Sbjct: 106 FSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVD--NEACRLIGKLIAERSMEADV 165

Query: 131 PAVCVHLKREHKYHGKIKAVIDSVREAGI 154
            AV    ++  +  GK+  VID+++E GI
Sbjct: 166 YAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]

BLAST of Carg25025 vs. TAIR 10
Match: AT3G45020.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 41.6 bits (96), Expect = 6.8e-04
Identity = 33/111 (29.73%), Postives = 58/111 (52.25%), Query Frame = 0


Query: 62  LKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLL 121
           LK YVL++  + KY++A V+      +   AS+ E  ++ S+E  R   A AAA +G++L
Sbjct: 4   LKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVGEVL 63

Query: 122 ------KGIP-----AVCVHLKREHKYHG-----KIKAVIDSVREAGIKLL 157
                 +G+       +   +K+E +  G     K+ AVI+S+R  G+ L+
Sbjct: 64  AMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLI 114

The following BLAST results are available for this feature:

BLAST of Carg25025 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022317.1	1.3e-76	100.00	rplR, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6588487.1	2.2e-65	95.21	hypothetical protein SDJN03_17052, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022970166.1	4.9e-44	89.66	uncharacterized protein LOC111469142 [Cucurbita maxima] >XP_022970175.1 uncharac...	[more]
KAG6590442.1	1.8e-43	88.79	hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022961444.1	1.8e-43	88.79	uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 unchar...	[more]

BLAST of Carg25025 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8IAP8	6.4e-07	40.43	50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5...	[more]
P52863	4.2e-06	40.43	50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1	[more]
B7VLE1	5.5e-06	39.36	50S ribosomal protein L18 OS=Vibrio atlanticus (strain LGP32) OX=575788 GN=rplR ...	[more]
Q5E898	7.1e-06	41.49	50S ribosomal protein L18 OS=Aliivibrio fischeri (strain ATCC 700601 / ES114) OX...	[more]
A7MWH4	7.1e-06	40.43	50S ribosomal protein L18 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) OX...	[more]

BLAST of Carg25025 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZV8	2.4e-44	89.66	uncharacterized protein LOC111469142 OS=Cucurbita maxima OX=3661 GN=LOC111469142...	[more]
A0A6J1HE21	8.9e-44	88.79	uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC1114620...	[more]
A0A6J1I0R8	2.6e-43	87.93	uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940...	[more]
A0A6J1CWR7	2.2e-42	86.21	uncharacterized protein LOC111015286 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A5D3DYC1	2.9e-42	86.21	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Carg25025 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27820.1	2.8e-37	72.41	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	9.5e-06	26.85	Ribosomal L18p/L5e family protein	[more]
AT3G45020.1	6.8e-04	29.73	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.100		coord: 54..155 e-value: 3.5E-17 score: 64.9
None	No IPR available	PANTHER	PTHR12899:SF6	OS03G0694800 PROTEIN	coord: 47..156
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 61..153 e-value: 2.44296E-18 score: 73.3431
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 54..153
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 66..155 e-value: 1.4E-12 score: 48.0
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 47..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25025-RA	Carg25025-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome