Carg25016 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25016
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 6400137 .. 6402089 (+)
RNA-Seq ExpressionCarg25016
SyntenyCarg25016
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGGAAACGATCATTATGTTTACCACAATGCTGCCATGGTGGTTGCTATTCCTAACGGGTATCCAACATCAACAACTACTAGAGAATGCTCGTCCGACCAGAAATGGGTCATGGAGGTGTGCGAACCGACTGGTGGGTCCATGCTCGCACGTGTGGACTGTGGATAGAAAATTGAGTACACATCCAATTGTTCGCTTAAGATAGCAGCGGTAGAAAAAAAAAAAACCAATAGTGGGGTTAGTTAGTGAGTATTTCTTAAAATATTCAAGCCACGTGATACTTTTATTCCAGGTAAATGCAAGACATTCCTGTAGGGTGACAAAGACATCGCAACTCGAGATCATGACACATGCATACGTCAATTGTATTTATTTTCTTAGATTTGGGCTAGAATAGGATGTTTTAAATTTAAATGTTTATTTATTTCATTTAGTATTTTGTTGTGTCGTTTTAAAGATGTTTTTGAACACATAAGTCCACGACAGTGTTTTAAGATGAAGTTTAAAGGCTAACTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGTTATGATAATGGTAGCGACTCTTGGTAAGTAGAAATCTAGGTTCGTTACAAACCGACGATTAGAGGACGATTGACGTGCCGTGAGCTGGGAATGTGAATTTGAGTCATATTAAAAAGAATCTCATAGAGATTCAAGATTCACTCGAATATAAATAAATAAAGATCATCACAACTTTCTCCATTTGCTTTAATATGTTTGCATAACTCTAATATAATTCAAAGTCGAACCCAAATTGATTTCTAATATAATTCAAAGTCGAACCCAAATTGATTTCTAAAGCGTTTAAGAACCATAACATTTCACTATAAGGAGAAGTATTCGTTCAAATCAAAGCTAGCATCATAGGCGAATGAAGACATAAGATACCTTTACATGAGCGGGCGTCGTAGGCGAATAGGGTCATGCATAGGGACCTAGCGTAGTAGAGGGTGCACGCACGTTGCCATTAGGCGCATCCTTAGAAGCTTATTAGTCACCTAATCAACTCTCAAATGCTCGATATTTTTATAACCGATTATGATCACATCACGACTTGAATCAAAACCTAGGTCTACTTAAATTGTTTATATGATGCTATGATTAATGGTTTGTGTGTGTGCCATCCATGGACTCTAAATTAGTCACTACATTTTTATATATATATATATATATACTTTTATCTAATAGATCATAGATCGTTGACAGAGTGTATATGGGTTGGGTTAGAGAAATGTTTTGGACCAATTCAAAATTTTTGGTTGGTTGAGTTAGTGATCTAAGGCATCGGAATAGAGTTCACACTCCACTCCAACCCTATATATTTCGAGTTGGGTTGTCAAATTATCTATAATATATTTTATATTAATAATTAAAATCTCAAAAATCTCAAATATCAAATATTCACATGTCAAATTGGGTAGAGTTAGGATTGAGTTGGGTTGTAACCCTATTTCCGGGTTGATCAGATTGGTCAGGTTGACCCGACCCAAAAAAATGTCAACTTGTGAACGGACCCAAATTTTCGATTTTCTAAAATTTCAATTCGATCAAAATTAGTGGTAAACATATATTTAATAAATTAAAATTAATTTAAGGCTTATTTTTATACCTTCACATAAATTTTATCTAATCAAAATTTATTTGGTATCAATAATATATTTGAGAATAATTTTAAATATAAATAAAATAATTTTTATAATTTCAAAATCACCCAGATTTACCATATTTATTTCTTTTAACTATTACTAGCGGTTCTTTTTTCTTAAACGTCAGCCATTTCTCGCTCCCATTACTACTGCACCCGGCCCCGCCGTGTCGCCGCATGCTCCACTCTCAGCCGTCGCAGTCTCAGCCTCCCTTCCAACTCGACGCCGCTCCCTGCCTCTCACACTCTCTTAA

mRNA sequence

ATGCAAGGAAACGATCATTATGTTTACCACAATGCTGCCATGGTGGTTGCTATTCCTAACGGGTATCCAACATCAACAACTACTAGAGAATGCTCGTCCGACCAGAAATGGGTCATGGAGCCATTTCTCGCTCCCATTACTACTGCACCCGGCCCCGCCGTGTCGCCGCATGCTCCACTCTCAGCCGTCGCAGTCTCAGCCTCCCTTCCAACTCGACGCCGCTCCCTGCCTCTCACACTCTCTTAA

Coding sequence (CDS)

ATGCAAGGAAACGATCATTATGTTTACCACAATGCTGCCATGGTGGTTGCTATTCCTAACGGGTATCCAACATCAACAACTACTAGAGAATGCTCGTCCGACCAGAAATGGGTCATGGAGCCATTTCTCGCTCCCATTACTACTGCACCCGGCCCCGCCGTGTCGCCGCATGCTCCACTCTCAGCCGTCGCAGTCTCAGCCTCCCTTCCAACTCGACGCCGCTCCCTGCCTCTCACACTCTCTTAA

Protein sequence

MQGNDHYVYHNAAMVVAIPNGYPTSTTTRECSSDQKWVMEPFLAPITTAPGPAVSPHAPLSAVAVSASLPTRRRSLPLTLS
Homology
[Close]
BLAST of Carg25016 vs. NCBI nr
Match: KAG7022326.1 (hypothetical protein SDJN02_16057, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.3 bits (412), Expect = 8.7e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MQGNDHYVYHNAAMVVAIPNGYPTSTTTRECSSDQKWVMEPFLAPITTAPGPAVSPHAPL 60
          MQGNDHYVYHNAAMVVAIPNGYPTSTTTRECSSDQKWVMEPFLAPITTAPGPAVSPHAPL
Sbjct: 1  MQGNDHYVYHNAAMVVAIPNGYPTSTTTRECSSDQKWVMEPFLAPITTAPGPAVSPHAPL 60

Query: 61 SAVAVSASLPTRRRSLPLTLS 82
          SAVAVSASLPTRRRSLPLTLS
Sbjct: 61 SAVAVSASLPTRRRSLPLTLS 81

[Close]
BLAST of Carg25016 vs. NCBI nr
Match: XP_023511563.1 (polygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 1  MQGNDHYVYHNAAMVVAIPNGYPTSTTTRECSSDQKWVME 41
          MQ NDHYVY+N  + VA PNG   ST TRECSSDQK V +
Sbjct: 1  MQENDHYVYYNIVVKVATPNGCLASTATRECSSDQKGVQK 40

The following BLAST results are available for this feature:
BLAST of Carg25016 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022326.18.7e-37100.00hypothetical protein SDJN02_16057, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023511563.11.1e-0465.00polygalacturonase-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg25016 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25016 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25016 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25016-RACarg25016-RAmRNA