
Carg25002 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTACTCTACGACTGATAATATGGGAAAGGAAAATTTGCTGCAGAGAGTAGATGACAACACTGAAGTGAATGGTTGTTCAACTACCGAGAACGAAGATCTTGGTTGTCAGTCTCGCCATAGTGTAGGCAAGGAATCTGGGGCAAGTTGTCGTGTGTGTCAATGTAGCGAATCTGACAGAAGAGGTGATGCTGTTTTAGGATTTCTAGGCATTACTCCTCCAATAATGGAAGAAAGAAAAAGTGATCGGGATTCTACGTCCGAGAAGCAAAGTCTAGAACATGTTGATGGTTGTTCCGTGCTGAAAAAAAACGTTAAAGGGGATTCTGGTTCGATTAAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATTGAAATGGGTTCATGTCATCTTGAAGATGCATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCTCTTGTACACTATGCATGTGCTCTTAAAGTGGTTTGTCAGCCATGGATCAACAGTTTGTGAAATTTGTGGATGTATTGCGGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTAAAAGAATATGAAGCTTTAAGGGAAAGAACTGCTCGTGGGGAACCGAATCCTATGCAGACAATTGCTAGTACCGATATCGATCCTGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTTAGTGAAATTGCATTGTGGTTTAGTCCTCATAGTTATATTAGCAACAATAACTCTAGTGCAGCCTCCCAGGTTGTTTCTGAACATTTGAATACCATCTCAGAAAATGTCGTTCGTGCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGTCTGCTCACCGTGACGCTCGCTTGCCTAATAGCTCCTCGTGTGGGGAAGGTAAGTCTTGGTAGCTGTTTTATATTATAGTAATTCAGATGCATCTTTCTTGTCAATATGGTTCATTTAAATTCTCTTATTTTAAAATGAATTCATAGTACTGCAAATTACTGAGGTAAATTTAAAAAATAACGTAGTGTTGAAAAATAATTTTGATTTAAGAGTGTTGAAATAAGACAAATTACAAAATTGGGGTAGAGGAGCAAACTATTGACAAAAATAGGGTAGATTTTTTCAGGATGATTGCCATGTCGCGTATATCGTACTTGAGTTTTAGGCCTTTGTTTATTTTCAAATAATAATCCAATTGTCTTCTATTATGGTTTGCTTGTTCAATGAGTTCTTGTTGTGTTATGTTGAAGACATGGAAACCATCAATACACCATTAGAGCAACCATCCACCACGAAACCAAAAAACACACAACAACCTCTACTTAATTCCCCACAAAGAAGGGAAAAAAGGAACACATAATTCAATCATTTTGTACACAATCAAATTTTAAAGTGGAATAGAAACCTACAAACTCCACAAAAAGTCCACTCCTTGAGCGTTCATTTCATCTCTCTACTTCATTGGTCTTCTTCAAACATTATGTGAGACCCGAGTAAAGGAGGGGTACATAAATGGGTCGAGACCACATTTGAATGAGAGGGATCATGAGAATTAGATGACTAAGAAAGACTTAAAAAAATTGAAAGTTTCTACCTATGCCAATATCATAAAAGAGTGATCATGGGAATAGGATAACTAAGAAAGATTTAAAAGAATTGAAAGTCACTTACCTATACCAATAAGGTGCACCTTCCTTTTTGGTGGCTTAATCATATGAACTCCATAGTTAAGCATGCTTTACTTCGAGCAATTCTAAGTTGGGTGACTTCTTGGGAATTCTCCTAGTGTAACGACCCGCTTTTTGAGGGACTCAAGCCATGAACCGTTACTCACTAATGTGAAATAGTTAAACACGTGCATGAACATATGAAATTCATTTAAAGTAGTAACGAAATTTTTTGATTTTACAAAGGATAAACGGAGACCACCAAAATAGAATATTACAAGTTTAGACTATTTAAAATACATGAAGTACAAAAATTAAAAGACAAGTATGAAAGAAAATCTAGACTTGGATATGATTTGATTCCCTATGGCCAACGCCCACGTGCCCCTCCGCCTCAGCCGCTACATCAGGTTGCACCTGAAAAGAAAATTGAAAAAGTAGGATTGAGTATATAAAATATACTCAGTAACTAGCTTGCTGGTAGTTCATAGTTTGTTTTAAGTCTTATGAAATAAATTTCTTTCGTTTAGTGTCTTATTTTGCTTTAGGAGTTCGTTCCTTAGAGTAAGTTCTTTCTAGGCTACACCCTAGGTTAGTTCGTTCCACCTAGCTCAACTTAGGGTAATTCAGTGGAAACTTGTTTAAGTTCTTGGTTCTTGTTTAAGTTCTTGATTATAGTTCTTGTTTAAGTTCTTGATTATAGTTCTAGTCCTGTATCATAGGCTCTCAAGGCGCAACCTCGACCTCAATCATAAGTTCTCATAAGATTCATGCATTCTAAAGTTTAACCAACTCTAAGTTACTATTGTGGATTTCTGCTGCTCGTGACAGGTTCACTAAAAGGAAACTAACTAGTAAACTCCCTAGTAATCCTCATAGAGTACAACCATACGTCATAAGATATCATAAGCCAGTTTTATAGTTATCCGGACCCCTGATAGTCGAGTCAGGTTTACAATTAAAGCTAGTTGGCGAGCTTATTGTTATAACTTGGGTTTGTTTGGGGGTAGAGTTCCTCCTTGCCATCGGGGATGAATATGCCAAGGTTTCTATTAAGGATAACTCAAATTTATGGATATATCGACACATAGTTTAATATCGAAGGCTATTATTGATAAATTACTCTAAATAACAGTAGAGTTTATATTTTATTAAGACAATTTTTTAAGAACATTAACAAATATATAATTGCCAATATAAAATTGAATCGACCATATGTCGTCGTTAGTTTCTCTTTGGAGTGCCAATGCTATGGGGTTTTGTAATTGTTCCATTCATTGATATCCTTTGATCGCGCTAGATTTTTTTCTTGAAGTACCTCTTAAAGAATTTTATTTTGGTGCAGAAAACTGCAAAAAGTGGCCTCCATATTCTTCTCGGAGGAGTTTGTGCGTTAACCGTAGTGGTTTTCTTCCGCTTTGTGAGTATAATGCATTTTATTTGGCCTTAAACTTGCTTTTCTGGCATCTTTTTTTACTTTTATCATAGGAAACCGTTTATTAATTAGTAACGCATTGACTGGTAGAATGGACTAAGGGTCTCACTCAAATGTAGTTGTCGGGTGTCATAATCACAATCATGTGGCAGCAAGACGACGATTGGGCGATACTTGTTCTAACTCAATGAACAA ATGTACTCTACGACTGATAATATGGGAAAGGAAAATTTGCTGCAGAGAGTAGATGACAACACTGAAGTGAATGGTTGTTCAACTACCGAGAACGAAGATCTTGGTTGTCAGTCTCGCCATAGTGTAGGCAAGGAATCTGGGGCAAGTTGTCGTGTGTGTCAATGTAGCGAATCTGACAGAAGAGGTGATGCTGTTTTAGGATTTCTAGGCATTACTCCTCCAATAATGGAAGAAAGAAAAAGTGATCGGGATTCTACGTCCGAGAAGCAAAGTCTAGAACATGTTGATGGTTGTTCCGTGCTGAAAAAAAACGTTAAAGGGGATTCTGGTTCGATTAAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATTGAAATGGGTTCATGTCATCTTGAAGATGCATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCTCTTGTACACTATGCATGTGCTCTTAAAGTGGTTGTGAGTTCTTTAAAAGAATATGAAGCTTTAAGGGAAAGAACTGCTCGTGGGGAACCGAATCCTATGCAGACAATTGCTAGTACCGATATCGATCCTGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTTAGTGAAATTGCATTGTGGTTTAGTCCTCATAGTTATATTAGCAACAATAACTCTAGTGCAGCCTCCCAGGTTGTTTCTGAACATTTGAATACCATCTCAGAAAATGTCGTTCGTGCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGTCTGCTCACCGTGACGCTCGCTTGCCTAATAGCTCCTCGTGTGGGGAAGAAAACTGCAAAAAGTGGCCTCCATATTCTTCTCGGAGGAGTTTGTGCGTTAACCGTAGTGGTTTTCTTCCGCTTTGTGAGTATAATGCATTTTATTTGGCCTTAAACTTGCTTTTCTGGCATCTTTTTTTACTTTTATCATAGGAAACCGTTTATTAATTAGTAACGCATTGACTGGTAGAATGGACTAAGGGTCTCACTCAAATGTAGTTGTCGGGTGTCATAATCACAATCATGTGGCAGCAAGACGACGATTGGGCGATACTTGTTCTAACTCAATGAACAA ATGTACTCTACGACTGATAATATGGGAAAGGAAAATTTGCTGCAGAGAGTAGATGACAACACTGAAGTGAATGGTTGTTCAACTACCGAGAACGAAGATCTTGGTTGTCAGTCTCGCCATAGTGTAGGCAAGGAATCTGGGGCAAGTTGTCGTGTGTGTCAATGTAGCGAATCTGACAGAAGAGGTGATGCTGTTTTAGGATTTCTAGGCATTACTCCTCCAATAATGGAAGAAAGAAAAAGTGATCGGGATTCTACGTCCGAGAAGCAAAGTCTAGAACATGTTGATGGTTGTTCCGTGCTGAAAAAAAACGTTAAAGGGGATTCTGGTTCGATTAAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATTGAAATGGGTTCATGTCATCTTGAAGATGCATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCTCTTGTACACTATGCATGTGCTCTTAAAGTGGTTGTGAGTTCTTTAAAAGAATATGAAGCTTTAAGGGAAAGAACTGCTCGTGGGGAACCGAATCCTATGCAGACAATTGCTAGTACCGATATCGATCCTGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTTAGTGAAATTGCATTGTGGTTTAGTCCTCATAGTTATATTAGCAACAATAACTCTAGTGCAGCCTCCCAGGTTGTTTCTGAACATTTGAATACCATCTCAGAAAATGTCGTTCGTGCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGTCTGCTCACCGTGACGCTCGCTTGCCTAATAGCTCCTCGTGTGGGGAAGAAAACTGCAAAAAGTGGCCTCCATATTCTTCTCGGAGGAGTTTGTGCGTTAACCGTAGTGGTTTTCTTCCGCTTTGTGAGTATAATGCATTTTATTTGGCCTTAA MYSTTDNMGKENLLQRVDDNTEVNGCSTTENEDLGCQSRHSVGKESGASCRVCQCSESDRRGDAVLGFLGITPPIMEERKSDRDSTSEKQSLEHVDGCSVLKKNVKGDSGSIKFIGPNGEVFICKADIEMGSCHLEDALVELGCSCKSDLALVHYACALKVVVSSLKEYEALRERTARGEPNPMQTIASTDIDPDAVAAVRRQRLSEIALWFSPHSYISNNNSSAASQVVSEHLNTISENVVRAENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFVSIMHFIWP Homology
BLAST of Carg25002 vs. NCBI nr
Match: KAG7033494.1 (hypothetical protein SDJN02_03216, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 617.8 bits (1592), Expect = 5.0e-173 Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0
BLAST of Carg25002 vs. NCBI nr
Match: XP_023544629.1 (uncharacterized protein LOC111804155 [Cucurbita pepo subsp. pepo] >XP_023544630.1 uncharacterized protein LOC111804155 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 582.0 bits (1499), Expect = 3.0e-162 Identity = 303/330 (91.82%), Postives = 303/330 (91.82%), Query Frame = 0
BLAST of Carg25002 vs. NCBI nr
Match: XP_022928641.1 (uncharacterized protein LOC111435487 [Cucurbita moschata] >XP_022928642.1 uncharacterized protein LOC111435487 [Cucurbita moschata]) HSP 1 Score: 580.1 bits (1494), Expect = 1.2e-161 Identity = 302/330 (91.52%), Postives = 302/330 (91.52%), Query Frame = 0
BLAST of Carg25002 vs. NCBI nr
Match: KAG6603182.1 (hypothetical protein SDJN03_03791, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 579.7 bits (1493), Expect = 1.5e-161 Identity = 302/330 (91.52%), Postives = 302/330 (91.52%), Query Frame = 0
BLAST of Carg25002 vs. NCBI nr
Match: XP_022967817.1 (uncharacterized protein LOC111467221 [Cucurbita maxima]) HSP 1 Score: 568.9 bits (1465), Expect = 2.7e-158 Identity = 298/331 (90.03%), Postives = 301/331 (90.94%), Query Frame = 0
BLAST of Carg25002 vs. ExPASy TrEMBL
Match: A0A6J1EKV8 (uncharacterized protein LOC111435487 OS=Cucurbita moschata OX=3662 GN=LOC111435487 PE=4 SV=1) HSP 1 Score: 580.1 bits (1494), Expect = 5.6e-162 Identity = 302/330 (91.52%), Postives = 302/330 (91.52%), Query Frame = 0
BLAST of Carg25002 vs. ExPASy TrEMBL
Match: A0A6J1HRV4 (uncharacterized protein LOC111467221 OS=Cucurbita maxima OX=3661 GN=LOC111467221 PE=4 SV=1) HSP 1 Score: 568.9 bits (1465), Expect = 1.3e-158 Identity = 298/331 (90.03%), Postives = 301/331 (90.94%), Query Frame = 0
BLAST of Carg25002 vs. ExPASy TrEMBL
Match: A0A6J1E1Q0 (uncharacterized protein LOC111025618 OS=Momordica charantia OX=3673 GN=LOC111025618 PE=4 SV=1) HSP 1 Score: 489.6 bits (1259), Expect = 9.9e-135 Identity = 258/331 (77.95%), Postives = 277/331 (83.69%), Query Frame = 0
BLAST of Carg25002 vs. ExPASy TrEMBL
Match: A0A1S3B5N6 (uncharacterized protein LOC103486085 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486085 PE=4 SV=1) HSP 1 Score: 488.8 bits (1257), Expect = 1.7e-134 Identity = 262/328 (79.88%), Postives = 272/328 (82.93%), Query Frame = 0
BLAST of Carg25002 vs. ExPASy TrEMBL
Match: A0A1S3B510 (uncharacterized protein LOC103486085 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486085 PE=4 SV=1) HSP 1 Score: 488.8 bits (1257), Expect = 1.7e-134 Identity = 262/328 (79.88%), Postives = 272/328 (82.93%), Query Frame = 0
BLAST of Carg25002 vs. TAIR 10
Match: AT5G08750.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 302.0 bits (772), Expect = 5.6e-82 Identity = 181/337 (53.71%), Postives = 223/337 (66.17%), Query Frame = 0
BLAST of Carg25002 vs. TAIR 10
Match: AT5G08750.2 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 302.0 bits (772), Expect = 5.6e-82 Identity = 181/337 (53.71%), Postives = 223/337 (66.17%), Query Frame = 0
BLAST of Carg25002 vs. TAIR 10
Match: AT5G08750.3 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 298.5 bits (763), Expect = 6.2e-81 Identity = 179/337 (53.12%), Postives = 222/337 (65.88%), Query Frame = 0
BLAST of Carg25002 vs. TAIR 10
Match: AT5G63780.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 290.0 bits (741), Expect = 2.2e-78 Identity = 169/330 (51.21%), Postives = 217/330 (65.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|