Carg24976 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24976
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Queuine tRNA-ribosyltransferase accessory subunit 2
Location	Carg_Chr15: 165118 .. 169576 (+)
RNA-Seq Expression	Carg24976
Synteny	Carg24976

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTCGCGGTGAAGGCATGGGGCAACGGCAAGGCGCGCACCGGATTTCTACAGCTCGTCCACTGCGCTTCCGCCATGGAGACTCCCGCGTTACTTCTCTCTACTCGCAAAGGACTGCCTAATTTCAGCTCTCCTGATCTTCTTCCCTCTCTCCCTTCGCCTGATTCTCACCTCCTCCAATTCAGTCCTCTTCACTTGTAAGTATTCTACACAATCCCTACGCCTTCAGCTGCATTCAATCGTTTTCATTTTAATTCGTTTGCGTTTCGATGTACTGATCACTCACTTCATTCTGCGTTCACTGTGTTTCTTAATTGGAGTGTCTCGCTCTACTTTGTTGCATGATTTTTCTTTCATTTATTTCGTCCCGTCTAGCTTAAAGATTGTTTGTCTGCGAGGACGATTCCTGGACTAGAAACTATTCTACAATCATGAAAATAGACTGGCTAAAAGCATGAGATAAGAAGTTCGTACTTGGAGAATAATCGTGCGGTACCTTTTGGATTTTTCTAGGGGAATATGTCATATACGGAAAAGGACGAAATTACTGGCGAATGGATGTAGAGCGTGTAATCATGGGAGTTGGATGATAATTAATGTCCGCTGTGATTCTTAACTATCTGAACGGCTGAGTTAATGATGCAACGACCTAATTTATTGATGTTTCGATTTATGCTTCTAGGCTCTTCTTACACAGCTTATCTATGGATTTTTTTTTTATTATTAATCATTTGTATGCGTGAAAGAACAGTCAAGGAAATTTGTGGAATCACATTGCTTTATCTATCCATTTTGGTCCTCGATTCAACTTCCGTAATTAAATAAATTTTTAACTTTTAGATGACATGCTGTAATGAAATTTGTTTCTCTCATTTTTAGATTTTATCAGATGAGTTCATTTTTGTACAGGTAGTAGGTACATTAATTGATTCTCTACGTTGTTCTCGATGTTGGTGGCTGTTTTTCTTTAGGCACTTTATGCTCCTGTTACAGTTCTCATCCAAAATATCGGCTTAGATTTTCATGATTCCATCTTGTATTAAAAAATTGGCTGTCCTTCACTGTGTAGTTAACAAACAAGTCCGGTAGAAAAAAAATATTTCAAGTATAACATGAAGATAGTTGTTTTTAATTGATATTGGTTTGATGTTAGTCACATTGACTTTTTTATCATTTAAATCATAGCATAGAAGGTCATTCATCAAAAACAATATCAAGTATTGGAGGGCTATAGCATTTACTTGGTTTACATGAATATGGATTTGCAGCTGTAGCAAGGGATTCTGTTCAGTGCCTTCCAAAATGTGATGCTACCAATAAGTTTGGAGCATCTTTTGAGACTACTAGGGGTCATCGTTCGGTAATGGAATCTCACTACTCGTTGCATCAACTTTGGCTATCCATCTTTAGTATATAATTTGGAGAACTAGTTTCTAAGTTCGCTTTGTAATTGTAGATTAGACCTGTTGCGTAAATTGAAATGATTTCGTGCATGAAACCAGACATTTGGGCCTCCTTGGCTGATGAAGTACCATCGTGGGTTTCAGATAAAAGGAATAAAACATCAGTGGATCGAACTGTGAAATGGCTGGATGAATGCATCACAATGAACTCAGTAAGAACGCTAGGATGCCCCTTTTATATATCAGCATCTTGTCTGGATTTGAACTCTGCTAGATGTGTAATGTTGAGAAATGTAGGTCAATGAGCATTATTTCTAACCATTTAGATAAGCAGTACATAATTGCTCTTTCGTAGTGTGTTGTGTGTTTTAAACTTCAACAAGTGGCTAGGCCCATAGAGAGAAAATAAGTTGGGAAAAGCAGCAGTCAAAAAAGCATCTGGTTGTGCATTTCTATAGGGAAATTTATAGCATCATAGTGCTTAGATAGGAAAATTCATGAACGAGCAGAAAGTAGGCCAAAATTTCCAGAGCAAGCTGACCAAAGGAGGGGAATTCTGGTCCCTTTTAAATTGATAGAAATGACATAATTCTATCAGATAAGAATGTTGTGAAAAAGTTTGGTGGATTTCTTTAAACACTTGTTCATGGTAGGTGATCATCAGAGATTTTCCAAAATCTAAATACTAGAGTGATTGATTGGACAGGCTTTTACTTGCATATTTTAGGTATAGATTCTCAAGTGTAAAAGGGTTAGGTGCCTAAAGTTCCCTAGACTAGGTGCCTATGGGTAACGATTGGATTGTGGTTTCCCACTAGTATTTTAGAAGTGGTTGTTAACAAATGCACAAATGAAACATTTTAATAGCTTTGTTGTTTCTGGGTATTATGGCATGAGATAGCTGTTCGGTGCTTCCAGAGTATCATTTTAATAGCTTTCAAAATGCCCTCAAATCAAGAGTATTGGGCCATATACATGCAGCAGAATTTATAGGTTGTATATAAATTTTTCTTATGAAGAGATATTCTTAAGATTTTTAGAGTGTATCTAAGTCATATGACTGTTGCCTTTTCTGATAAGAGTCATATGGCTGTTGTTGACTCATTAATGCAAAAGCAATATGGGAATGCTGTCATGACTCATGGTGTAGTGATAGTATTTAGTCTTTATGTGTAGGTTTGGTCCTTTTTATATTTTTTTCTTTTCCCAATCATGTCAAGAGTGATTTGAAACAAGTAACTTATTATTATAATGAAGACAGGTGGAGCTGTTTTTGGAGCTATTGTTGGAGGCAATGATGTAGAAGAACGTCAAGATGTGCTGCGGAGGTGGTTAAGCGTTATGTATCAGGTTCAATAACTTGTTCTTTGTATATAAGGTGAAACAGTGGTAATTAGTTCAAGAATTAATTGCTGTAGAGCTAATTTTGTGTTATATCAATTTCTAGCTTCTTGCAGAATTTGTCTAGACTATCAAAGTTCTTAATAGCCATTAACATAACAAATAAAATTTTGAACAGAATGTCAATATTTGTGTTCCTCGACCCTATCTAGCATGTAAGGAATGATTGTTTTCCGGTTGCATTTTGTTCAGTTAAATTGATCATTTCTATCCTAGTTTCCGGCCGCTTATTCTGATTTCTCAGTTTGAACAAACAATTTTTGGTAGGTTACTGGATTGGAGGTTTTGGGCTTGGAGAGAGCACGGATGAGCGTCCTGCCCTTCTTGATGCCATTACGGTAAGGATTTTGCTTGTAATGCTGTCAGGTTTGTCTTTTGGAACATTGCCATCCTTTTTCTGCACCAACTGAGAACGTGGATGTTTTGCATGTGAACCATAATAGTTGATGAGTTGAACTTTGAAGCTTAAGAGTAGCAAGTTGGATTTGTTTGTGTAGTCCTCTGTTAACAATCTGTCGGAGTTTGGTTTTTTTTCTTTTGAAGTTTTTTCTATTCTCTTTACGTTCATTGTCCTTGATGAATTTTTTTTCAAAGACAAATAAAAAGGCAACTTCACTGTGATTCTCATTACATCCATATCCCTTTGCTTCTCTCTCCTTCTCTGCGTCACTTTCCGTATCCTTTCTTTTCTATCTTCCCTCTCTGTATTCTAAGTAGCTCTATCCAAAGCTGTGTTGCCTCATGTCCACTTTTATTACACATTTTCCCGCATGTGTTTTGTAAGCGAAAAGGAAATGTACTACTTGCAATTCTTTCATTCCTTGCACAGGATGTTTTACCAGAGGAAATGCCCCGCATGACTGTGGCTTGGACTTCAGGTATAGTTTTTCATCTTTTAGATCAAGTTGGTTGCACCAACTTTATGTGTAACCTCAATTTGACCAAGAGTCATGAAGCATGCGTCTTGTTTTGACTTTTGGTTGATTTCGTCCACCACTGTGTGAAGCTGGAAATACATATTTTTAATATTTTATGGAACCTAAACATTTAAGGCTACGTTGGTTTATGGTTTTAGTAAGCCTAAATTTTTGTAGCTTGTGACTAAGTTTGTGTTTAATAATCATCACTATTAATGCAGACTTTATGATCCTTTTTGTAATATTATTGTGAGTTCTCTGGCCCCTAGAAGAGCATTTTGTAATTGTCGTTTGTCAATCAAACTAGTTTTGTCTAAATATCACTTTTGTTAATATATATATATATATATATATAGATAGACAGACAGACATATAAGGCAACCCCTCTGATAAAATGTTGGATGGCCCCTGACAAATACTGTTCAAATCACTTGCTAAATGTCTATGAAATGCTGGCTCAGATACTGCTGGAGTTGTATGAACATTTCACTACCTGAAATATACTTAGTTGTCTCAATCTTCATTCTCACAGTAATAATTCTCACCTTATTGCAGACATAACACTCATCATTATCTAGGATTCTTTCGATCAATCCGAGAAGCAATCAAGGCTGGAAAATTTCAGCAATTTCATCAGAAATTTGTTGAGGTGAGGCGCAATCATCTAGCCTTGGCAACATTGGCACTCGGCTCATGACGAGCTCGTCAAACAAGTAATTTTAATATTGAAAATAA

mRNA sequence

ATGAAATTCGCGGTGAAGGCATGGGGCAACGGCAAGGCGCGCACCGGATTTCTACAGCTCGTCCACTGCGCTTCCGCCATGGAGACTCCCGCGTTACTTCTCTCTACTCGCAAAGGACTGCCTAATTTCAGCTCTCCTGATCTTCTTCCCTCTCTCCCTTCGCCTGATTCTCACCTCCTCCAATTCAGTCCTCTTCACTTGGGAATATGTCATATACGGAAAAGGACGAAATTACTGGCGAATGGATGTAGAGCGTCTGTAGCAAGGGATTCTGTTCAGTGCCTTCCAAAATGTGATGCTACCAATAAGTTTGGAGCATCTTTTGAGACTACTAGGGGTCATCGTTCGACAGGTGGAGCTGTTTTTGGAGCTATTGTTGGAGGCAATGATGTAGAAGAACGTCAAGATGTGCTGCGGAGTTTGAACAAACAATTTTTGGTAGGTTACTGGATTGGAGGTTTTGGGCTTGGAGAGAGCACGGATGAGCGTCCTGCCCTTCTTGATGCCATTACGGTAAGGATTTTGCTTGTAATGCTGTCAGGATGTTTTACCAGAGGAAATGCCCCGCATGACTGTGGCTTGGACTTCAGACATAACACTCATCATTATCTAGGATTCTTTCGATCAATCCGAGAAGCAATCAAGGCTGGAAAATTTCAGCAATTTCATCAGAAATTTGTTGAGGTGAGGCGCAATCATCTAGCCTTGGCAACATTGGCACTCGGCTCATGACGAGCTCGTCAAACAAGTAATTTTAATATTGAAAATAA

Coding sequence (CDS)

ATGAAATTCGCGGTGAAGGCATGGGGCAACGGCAAGGCGCGCACCGGATTTCTACAGCTCGTCCACTGCGCTTCCGCCATGGAGACTCCCGCGTTACTTCTCTCTACTCGCAAAGGACTGCCTAATTTCAGCTCTCCTGATCTTCTTCCCTCTCTCCCTTCGCCTGATTCTCACCTCCTCCAATTCAGTCCTCTTCACTTGGGAATATGTCATATACGGAAAAGGACGAAATTACTGGCGAATGGATGTAGAGCGTCTGTAGCAAGGGATTCTGTTCAGTGCCTTCCAAAATGTGATGCTACCAATAAGTTTGGAGCATCTTTTGAGACTACTAGGGGTCATCGTTCGACAGGTGGAGCTGTTTTTGGAGCTATTGTTGGAGGCAATGATGTAGAAGAACGTCAAGATGTGCTGCGGAGTTTGAACAAACAATTTTTGGTAGGTTACTGGATTGGAGGTTTTGGGCTTGGAGAGAGCACGGATGAGCGTCCTGCCCTTCTTGATGCCATTACGGTAAGGATTTTGCTTGTAATGCTGTCAGGATGTTTTACCAGAGGAAATGCCCCGCATGACTGTGGCTTGGACTTCAGACATAACACTCATCATTATCTAGGATTCTTTCGATCAATCCGAGAAGCAATCAAGGCTGGAAAATTTCAGCAATTTCATCAGAAATTTGTTGAGGTGAGGCGCAATCATCTAGCCTTGGCAACATTGGCACTCGGCTCATGA

Protein sequence

MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHLGICHIRKRTKLLANGCRASVARDSVQCLPKCDATNKFGASFETTRGHRSTGGAVFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRILLVMLSGCFTRGNAPHDCGLDFRHNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLALGS

Homology

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BLAST of Carg24976 vs. NCBI nr
Match: KAG7015882.1 (hypothetical protein SDJN02_20985, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 501.1 bits (1289), Expect = 5.3e-138
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLL 60
           MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLL
Sbjct: 1   MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLL 60

Query: 61  QFSPLHLGICHIRKRTKLLANGCRASVARDSVQCLPKCDATNKFGASFETTRGHRSTGGA 120
           QFSPLHLGICHIRKRTKLLANGCRASVARDSVQCLPKCDATNKFGASFETTRGHRSTGGA
Sbjct: 61  QFSPLHLGICHIRKRTKLLANGCRASVARDSVQCLPKCDATNKFGASFETTRGHRSTGGA 120

Query: 121 VFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRILLVMLS 180
           VFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRILLVMLS
Sbjct: 121 VFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRILLVMLS 180

Query: 181 GCFTRGNAPHDCGLDFRHNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLA 240
           GCFTRGNAPHDCGLDFRHNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLA
Sbjct: 181 GCFTRGNAPHDCGLDFRHNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLA 240

Query: 241 LGS 244
           LGS
Sbjct: 241 LGS 243

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BLAST of Carg24976 vs. NCBI nr
Match: XP_038885042.1 (queuine tRNA-ribosyltransferase accessory subunit 2-like [Benincasa hispida])

HSP 1 Score: 260.4 bits (664), Expect = 1.6e-65
Identity = 175/401 (43.64%), Postives = 192/401 (47.88%), Query Frame = 0


Query: 1   MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLL 60
           MKFAVKAW NGKARTGFLQL +C +A+ETPALLLSTRKGLPNF SPDLLPSLPSPDSHLL
Sbjct: 1   MKFAVKAWSNGKARTGFLQLGNCPNAIETPALLLSTRKGLPNFISPDLLPSLPSPDSHLL 60

Query: 61  QFSPLHL-------------GICHIRKRTKLLANGCRASVARDSVQCLPKCDATNKFGAS 120
           QFSPLH              G+ H+      L      +VARDSVQCLP+CDATNKFGAS
Sbjct: 61  QFSPLHFLEGPSSKTISRIGGLQHLLG----LHEYGFVAVARDSVQCLPECDATNKFGAS 120

Query: 121 FETTRGHR---------------------------------------------------- 180
           FETT G R                                                    
Sbjct: 121 FETTCGRRLIRPVEYIEMISSMKPDIWASLADEVPSWVSDKRNKTSVDRTVKWLDECITL 180

Query: 181 -STGGAVFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRI 240
            STGGAVFGAIVGGND+EERQ     + K+ + GYWIGGFG GES +ERPALLDA+T  +
Sbjct: 181 NSTGGAVFGAIVGGNDIEERQRCAVEVVKRNVSGYWIGGFGSGESMEERPALLDAVTDVL 240

Query: 241 ------------------------------------------LLVMLSGCFTRGNAPH-- 242
                                                     L   L+G   +  A H  
Sbjct: 241 PEEMPRMICGLGLPEEILQGIATGVDLFDSAYIYHLTLGGFALTFPLNGIVEKQPAAHLK 300

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BLAST of Carg24976 vs. NCBI nr
Match: XP_022152510.1 (queuine tRNA-ribosyltransferase accessory subunit 2-like [Momordica charantia])

HSP 1 Score: 255.4 bits (651), Expect = 5.0e-64
Identity = 174/403 (43.18%), Postives = 192/403 (47.64%), Query Frame = 0


Query: 1   MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLL 60
           MKFAVKAW NGKARTG LQL +C +A+ETPALLLSTRKGL NF SPDLLPSLPSPDSHLL
Sbjct: 1   MKFAVKAWSNGKARTGVLQLGNCPTAIETPALLLSTRKGLLNFISPDLLPSLPSPDSHLL 60

Query: 61  QFSPLHL-------------GICHIRKRTKLLANGCRASVARDSVQCLPKCDATNKFGAS 120
           QFSPLH              G+ H+      L     A+VARDSV CLP+CDA NKFGAS
Sbjct: 61  QFSPLHFLEGPSSKTISSIGGLQHLLG----LHEYGFAAVARDSVWCLPECDAANKFGAS 120

Query: 121 FETTRGHR---------------------------------------------------- 180
           FETT G R                                                    
Sbjct: 121 FETTCGRRLIRPVEYIEMISSLRPDIWASLADEVPSWVSDKRNKTSVDRTVKWLDECITS 180

Query: 181 -STGGAVFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAIT--- 240
            STGGAVFGAIVGGNDVEERQ     + K+ + GYWIGGFGLGES DERPALLDA+T   
Sbjct: 181 NSTGGAVFGAIVGGNDVEERQRCAAEVIKRNVSGYWIGGFGLGESMDERPALLDAVTGIL 240

Query: 241 ------------------------------------------------------------ 244
                                                                       
Sbjct: 241 PEEMPRMICGLGLPEEILQGIAAGVDLFDSAYIYHLTIGGFALTFPLNGIVEKVPDLHLN 300

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BLAST of Carg24976 vs. NCBI nr
Match: XP_008441158.1 (PREDICTED: queuine tRNA-ribosyltransferase subunit qtrtd1-like [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 6.6e-64
Identity = 171/401 (42.64%), Postives = 189/401 (47.13%), Query Frame = 0


Query: 1   MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLL 60
           MKFAVKAW NGKARTGFLQL +C +A++TPALLLST KGLPNF SPDLLPSLPSPDSH+L
Sbjct: 1   MKFAVKAWSNGKARTGFLQLGNCPAAIDTPALLLSTSKGLPNFISPDLLPSLPSPDSHIL 60

Query: 61  QFSPLHL-------------GICHIRKRTKLLANGCRASVARDSVQCLPKCDATNKFGAS 120
           QFSPLH              G+ H+      L     A+VARDSVQCLP+CDATNKFGAS
Sbjct: 61  QFSPLHFLEGPSSKTISSIGGLQHLLG----LHEYGFAAVARDSVQCLPQCDATNKFGAS 120

Query: 121 FETTRGHR---------------------------------------------------- 180
           FETT G R                                                    
Sbjct: 121 FETTCGRRLIRPVEYIEMISSMKPDIWASLADEVPSWVSDKRNKTSVDRTVKWLDECITL 180

Query: 181 -STGGAVFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRI 240
            STGGAVFGAIVGGND+EERQ     + K+ + GYWIGGFG GES DERP+LLDA+T  +
Sbjct: 181 NSTGGAVFGAIVGGNDLEERQRCAVEVVKRNVSGYWIGGFGFGESMDERPSLLDAVTDVL 240

Query: 241 ------------------------------------------LLVMLSGCFTRGNAPH-- 242
                                                     L   L G   +  A H  
Sbjct: 241 PEEMPRMICGLGLPEEILQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPAAHLI 300

[Close]

BLAST of Carg24976 vs. NCBI nr
Match: XP_004138668.1 (queuine tRNA-ribosyltransferase accessory subunit 2 [Cucumis sativus] >KGN63275.2 hypothetical protein Csa_022389 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 1.2e-62
Identity = 171/399 (42.86%), Postives = 193/399 (48.37%), Query Frame = 0


Query: 1   MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLL 60
           MKFAVKAW NGKARTGFLQL +C +A++TPALLLSTRKGLP+F SPDLLPSLPSPDSHLL
Sbjct: 1   MKFAVKAWSNGKARTGFLQLGNCPAAIDTPALLLSTRKGLPHFISPDLLPSLPSPDSHLL 60

Query: 61  QFSPLHL-------GICHIRKRTKLLA--NGCRASVARDSVQCLPKCDATNKFGASFETT 120
           QFSPLH         I +I     LL       A+VARDSVQ LP+CDATNKFGASFETT
Sbjct: 61  QFSPLHFLEGPSSKTISNIGGLQHLLGLHEYGFAAVARDSVQSLPECDATNKFGASFETT 120

Query: 121 RGHR-----------------------------------------------------STG 180
            G R                                                     STG
Sbjct: 121 CGRRLIRPVEYIEMISSMKPDIWASLADEVPSWVSDKRNKTSVDRTVKWLDECIALNSTG 180

Query: 181 GAVFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAIT------- 240
           GAVFGAIVGGND+EERQ     + K+ + GYWIGGFG GES DERP+LLDA+T       
Sbjct: 181 GAVFGAIVGGNDLEERQRCAVEVVKRNVSGYWIGGFGFGESMDERPSLLDAVTDVLPEEM 240

Query: 241 ------------------------------------------------------------ 244
                                                                       
Sbjct: 241 PRMICGLGLPEEVLQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPDAHLIDNAS 300

[Close]

BLAST of Carg24976 vs. ExPASy TrEMBL
Match: A0A6J1DE50 (Queuine tRNA-ribosyltransferase accessory subunit 2 OS=Momordica charantia OX=3673 GN=LOC111020219 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 2.4e-64
Identity = 174/403 (43.18%), Postives = 192/403 (47.64%), Query Frame = 0


Query: 1   MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLL 60
           MKFAVKAW NGKARTG LQL +C +A+ETPALLLSTRKGL NF SPDLLPSLPSPDSHLL
Sbjct: 1   MKFAVKAWSNGKARTGVLQLGNCPTAIETPALLLSTRKGLLNFISPDLLPSLPSPDSHLL 60

Query: 61  QFSPLHL-------------GICHIRKRTKLLANGCRASVARDSVQCLPKCDATNKFGAS 120
           QFSPLH              G+ H+      L     A+VARDSV CLP+CDA NKFGAS
Sbjct: 61  QFSPLHFLEGPSSKTISSIGGLQHLLG----LHEYGFAAVARDSVWCLPECDAANKFGAS 120

Query: 121 FETTRGHR---------------------------------------------------- 180
           FETT G R                                                    
Sbjct: 121 FETTCGRRLIRPVEYIEMISSLRPDIWASLADEVPSWVSDKRNKTSVDRTVKWLDECITS 180

Query: 181 -STGGAVFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAIT--- 240
            STGGAVFGAIVGGNDVEERQ     + K+ + GYWIGGFGLGES DERPALLDA+T   
Sbjct: 181 NSTGGAVFGAIVGGNDVEERQRCAAEVIKRNVSGYWIGGFGLGESMDERPALLDAVTGIL 240

Query: 241 ------------------------------------------------------------ 244
                                                                       
Sbjct: 241 PEEMPRMICGLGLPEEILQGIAAGVDLFDSAYIYHLTIGGFALTFPLNGIVEKVPDLHLN 300

[Close]

BLAST of Carg24976 vs. ExPASy TrEMBL
Match: A0A1S3B3I7 (Queuine tRNA-ribosyltransferase accessory subunit 2 OS=Cucumis melo OX=3656 GN=LOC103485379 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 3.2e-64
Identity = 171/401 (42.64%), Postives = 189/401 (47.13%), Query Frame = 0


Query: 1   MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLL 60
           MKFAVKAW NGKARTGFLQL +C +A++TPALLLST KGLPNF SPDLLPSLPSPDSH+L
Sbjct: 1   MKFAVKAWSNGKARTGFLQLGNCPAAIDTPALLLSTSKGLPNFISPDLLPSLPSPDSHIL 60

Query: 61  QFSPLHL-------------GICHIRKRTKLLANGCRASVARDSVQCLPKCDATNKFGAS 120
           QFSPLH              G+ H+      L     A+VARDSVQCLP+CDATNKFGAS
Sbjct: 61  QFSPLHFLEGPSSKTISSIGGLQHLLG----LHEYGFAAVARDSVQCLPQCDATNKFGAS 120

Query: 121 FETTRGHR---------------------------------------------------- 180
           FETT G R                                                    
Sbjct: 121 FETTCGRRLIRPVEYIEMISSMKPDIWASLADEVPSWVSDKRNKTSVDRTVKWLDECITL 180

Query: 181 -STGGAVFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRI 240
            STGGAVFGAIVGGND+EERQ     + K+ + GYWIGGFG GES DERP+LLDA+T  +
Sbjct: 181 NSTGGAVFGAIVGGNDLEERQRCAVEVVKRNVSGYWIGGFGFGESMDERPSLLDAVTDVL 240

Query: 241 ------------------------------------------LLVMLSGCFTRGNAPH-- 242
                                                     L   L G   +  A H  
Sbjct: 241 PEEMPRMICGLGLPEEILQGIAAGVDLFDSAYIYHLTLGGFALTFPLDGIVEKQPAAHLI 300

[Close]

BLAST of Carg24976 vs. ExPASy TrEMBL
Match: A0A6J1JNK0 (Queuine tRNA-ribosyltransferase accessory subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111487476 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.3e-62
Identity = 170/403 (42.18%), Postives = 192/403 (47.64%), Query Frame = 0


Query: 1   MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLL 60
           MKFAVKAW N KARTG LQL +C +A++TPALLLST KGLPNF SPDLLPSLPSPDSHLL
Sbjct: 1   MKFAVKAWSNCKARTGCLQLGNCPTAIDTPALLLSTCKGLPNFISPDLLPSLPSPDSHLL 60

Query: 61  QFSPLHL-------------GICHIRKRTKLLANGCRASVARDSVQCLPKCDATNKFGAS 120
           QFSPLH              G+ H+      L     A+VARDSVQCLP+C+A+NKFGAS
Sbjct: 61  QFSPLHFLEGPSLKTISSIGGLQHLLG----LHEYVFAAVARDSVQCLPECNASNKFGAS 120

Query: 121 FETTRGHR---------------------------------------------------- 180
           FETT G R                                                    
Sbjct: 121 FETTCGRRLIKPVEYVELISSMRPDIWASLADEVPSWVSDKRNKTSVDRTVRWLDECINL 180

Query: 181 -STGGAVFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAIT--- 240
            STGGA+FGAIVGGND+EERQ     + K+ + GYWIGGFGLGES DERPALLDA+T   
Sbjct: 181 NSTGGAIFGAIVGGNDMEERQRCALEVVKRNVSGYWIGGFGLGESIDERPALLDAVTDVL 240

Query: 241 ------------------------------------------------------------ 244
                                                                       
Sbjct: 241 PEELPRMICGLGLPEEILQGIAAGVDLFDSAYIYHLTLGGFALTFPLNGIAEKRPDTHLN 300

[Close]

BLAST of Carg24976 vs. ExPASy TrEMBL
Match: A0A6J1HIG1 (Queuine tRNA-ribosyltransferase accessory subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111464336 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 6.6e-62
Identity = 169/397 (42.57%), Postives = 190/397 (47.86%), Query Frame = 0


Query: 1   MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLL 60
           MKFAVKAW N KARTG +QL +C +A++TPALLLST KGLPNF SPDLLPSLPSPDSHLL
Sbjct: 1   MKFAVKAWSNCKARTGCIQLGNCPTAIDTPALLLSTCKGLPNFISPDLLPSLPSPDSHLL 60

Query: 61  QFSPLHL-------GICHIRKRTKLLA--NGCRASVARDSVQCLPKCDATNKFGASFETT 120
           QFSPLH         I  I     LL       A+VARDSVQCLP+C+A+NKFGASFETT
Sbjct: 61  QFSPLHFLEGPSLKAISSIGGLQHLLGLHEYVFAAVARDSVQCLPECNASNKFGASFETT 120

Query: 121 RGHR-----------------------------------------------------STG 180
            G R                                                     STG
Sbjct: 121 CGRRLIRPVEYVELISSMRPDIWASLADEVPSWVSDKRNKTSVDRTVRWLDECIKLNSTG 180

Query: 181 GAVFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAIT------- 240
           GA+FGAIVGGND+EERQ     + K+ + GYWIGGFGLGES DERPALLDA+T       
Sbjct: 181 GAIFGAIVGGNDMEERQRCALEVVKRNVSGYWIGGFGLGESIDERPALLDAVTDVLPEEL 240

Query: 241 ------------------------------------------------------------ 242
                                                                       
Sbjct: 241 PRMICGLGLPEEILQGIAAGVDLFDSAYIYHLTLGGFALTFPLNGIAEKRPDTHLNDDAS 300

[Close]

BLAST of Carg24976 vs. ExPASy TrEMBL
Match: A0A5A7T128 (Queuine tRNA-ribosyltransferase accessory subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00430 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 7.4e-53
Identity = 126/237 (53.16%), Postives = 141/237 (59.49%), Query Frame = 0


Query: 1   MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLL 60
           MKFAVKAW NGKARTGFLQL +C +A++TPALLLST KGLPNF SPDLLPSLPSPDSH+L
Sbjct: 1   MKFAVKAWSNGKARTGFLQLGNCPAAIDTPALLLSTSKGLPNFISPDLLPSLPSPDSHIL 60

Query: 61  QFSPLHL-------------GICHIRKRTKLLANGCRASVARDSVQCLPKCDATNKFGAS 120
           QFSPLH              G+ H+      L     A+VARDSVQCLP+CDATNKFGAS
Sbjct: 61  QFSPLHFLEGPSSKTISSIGGLQHLLG----LHEYGFAAVARDSVQCLPQCDATNKFGAS 120

Query: 121 FETTRGHR---------------------------------------------------- 172
           FETT G R                                                    
Sbjct: 121 FETTCGRRLIRPVEYIEMISSMKPDIWASLADEVPSWVSDKRNKTSVDRTVKWLDECITL 180

The following BLAST results are available for this feature:

BLAST of Carg24976 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015882.1	5.3e-138	100.00	hypothetical protein SDJN02_20985, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038885042.1	1.6e-65	43.64	queuine tRNA-ribosyltransferase accessory subunit 2-like [Benincasa hispida]	[more]
XP_022152510.1	5.0e-64	43.18	queuine tRNA-ribosyltransferase accessory subunit 2-like [Momordica charantia]	[more]
XP_008441158.1	6.6e-64	42.64	PREDICTED: queuine tRNA-ribosyltransferase subunit qtrtd1-like [Cucumis melo]	[more]
XP_004138668.1	1.2e-62	42.86	queuine tRNA-ribosyltransferase accessory subunit 2 [Cucumis sativus] >KGN63275....	[more]

BLAST of Carg24976 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24976 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DE50	2.4e-64	43.18	Queuine tRNA-ribosyltransferase accessory subunit 2 OS=Momordica charantia OX=36...	[more]
A0A1S3B3I7	3.2e-64	42.64	Queuine tRNA-ribosyltransferase accessory subunit 2 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1JNK0	1.3e-62	42.18	Queuine tRNA-ribosyltransferase accessory subunit 2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1HIG1	6.6e-62	42.57	Queuine tRNA-ribosyltransferase accessory subunit 2 OS=Cucurbita moschata OX=366...	[more]
A0A5A7T128	7.4e-53	53.16	Queuine tRNA-ribosyltransferase accessory subunit 2 OS=Cucumis melo var. makuwa ...	[more]

BLAST of Carg24976 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002616	tRNA-guanine(15) transglycosylase-like	PFAM	PF01702	TGT	coord: 112..182 e-value: 7.7E-7 score: 28.6 coord: 197..230 e-value: 4.1E-8 score: 32.8
IPR036511	Queuine tRNA-ribosyltransferase-like	GENE3D	3.20.20.105		coord: 74..181 e-value: 1.6E-8 score: 35.7
IPR036511	Queuine tRNA-ribosyltransferase-like	GENE3D	3.20.20.105		coord: 182..240 e-value: 6.2E-8 score: 33.7
IPR036511	Queuine tRNA-ribosyltransferase-like	SUPERFAMILY	51713	tRNA-guanine transglycosylase	coord: 1..229
None	No IPR available	PANTHER	PTHR46064	QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2	coord: 198..234 coord: 118..172 coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24976-RA	Carg24976-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006400	tRNA modification
molecular_function	GO:0016763	pentosyltransferase activity