Carg24957 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24957
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	COP9 signalosome complex subunit 1-like
Location	Carg_Chr06: 7271347 .. 7273342 (-)
RNA-Seq Expression	Carg24957
Synteny	Carg24957

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTATGCATCATGCCTGGACTACCTTGGGAATCTTAAACCCAACTTATTGCTTGACATTCATTTACATGACCATGTTGAGACGCTCTACGATCAAATACGCCACAAGGCTCTCATCCAATACACTCTCCCATTTGTATCTGTTGATCTCCACATGATGGCTAATGCTTTTAAAACGAGTGTTACTGGTCTTGAGAAAGAGCTGGAGACACTAATCACCAATAATCAAATCCAGGTTTCTTTTCAACCATCCTTCATTTGTTTGTTGTTTCGATTTACATAATATTGTTATTACATGAAATGCTTCATGATGGTTGGATGGATTTATAAATCTGTGAAAAAAAATTATTACGAGGCATTGGAGCTATTCCACTGGTTGCTGTGTACTCATAACTCATAATGCATAACTAGGATTAAGCGTTATCTTTGGCTATCTGAAGTTCTCTTGATAGTGTCTTGTCTTCCTCCCTCCCCCCACCCCAACCAAACTTGTGCAACTGATTATTGGTTAACTGGGACCAAATCAACTTTTAGATGCATCTTTGAACCTATTAGCGACGAACGTTGTTAGGATTAATTGGATTCAGTTTAGTATTCAAGTGATCACTACATAACTTTTAGTTGTTGTAGGTCTACTTAGATGCTAAGTAGCTTTATAATTCATAGGATTCGAGCTTATATGCATTTCTGTGGAGTTTTATTTCGTTGAAGTGCTGAAATTAATAACCGAGCTTAGCTACAAATGTGACCAAAAATTGCCCAAATCAACAAAAGGGCCAGCCAACAAAATGTTCAAAATCTAGTCACAACAATATCTAAGGCTATCCATCATTCCTTTGCATTATTTATTTATTTCTTTACCAGGTGTTGTAAGTTGTTCTTAAAATCCGATCCCCACTCCTTTGCCTTTTGTCACTTAGCATGCAAGCGACAAGGGGGGTTATTTGTAACAGCCCAAGCCCATCGTTAATATAGATATTGTCCGCTTTGGCCCATTCCATATCACCATTAACCTCATGGTTTTTAAAACGTGTCTACTAGGAAGAGGTTTTCACACCCTTATAAGGAATGTTTCGTTCCCCTCTTCAATCGATATGGGATCTCACATTATTACAGGCCCCTCACCCCTAAAAATTAGCTTTGTTGAACTCCTTGACGCCATTTCCCTACTCCCCAACCCCTTTGGCTTCCATTAAGAAAGGTTGAGAATTTAGTTCTTACGCGATGCAACACCCCCATCCACTTCAATCAGCTACTCCCAAACCAGCAATCAACTATGTCTCTTTTATTAGGCCTTCCTCCCCACCACAATCTCATTTCAAACAGTTTTAGATTTCGAGGGGGAGTTTTTGATTTCTTTGTGTAATAAACTTGGTTTTATTTTTTAAACTATTATTTTTTTTGTCATGAACACCTATTTATTTCATCATCCCCTCAGTTTTCGTGTTTGTTTATGGATATCCAAACCGATGCTAGCATCATTCACTGTTTCACTAATCATGCTTGCAGGCCAGAATTGACTCACACAATAAAATTCTTTATGCCCGACATGCGGATCAGAGGAACGCAACCTTCCAAAGGGTTCTACAGACAGGGAGCGAGTTCGATCGTGAAGTTCGATCGATGCTATTGAGAGCAAATCTTATCAAACACGACTATAACCAACGAGGTGGTTCCAGGAAAATCTGATATATTTTTTTAAATCTGGGCTGCTGGTAGGACCATGTTTTTCTTCTTCATTGGCTTTCATTGTGAGCCATGAGAGAGGTTGCATAGAATCAAAAATGAGATTAAAATTGGAAGTTCCATGAGAGGTGGTGGATTGTTAGAACACATACATACTGCTTGCTGGCTGCTGGTTTTGTGAATACTGATTTTTCTCAGTTGCAGTTCTTGATTCTTCCAGTTTTTCCTTACAGATTCCAGGGAAACATCTTCAACTTTGGCTGTAAGTTGAATATTCCAAGTAATGCTAGTCTCTGTCCTTTGTTTTTTTC

mRNA sequence

CATTATGCATCATGCCTGGACTACCTTGGGAATCTTAAACCCAACTTATTGCTTGACATTCATTTACATGACCATGTTGAGACGCTCTACGATCAAATACGCCACAAGGCTCTCATCCAATACACTCTCCCATTTGTATCTGTTGATCTCCACATGATGGCTAATGCTTTTAAAACGAGTGTTACTGGTCTTGAGAAAGAGCTGGAGACACTAATCACCAATAATCAAATCCAGGCCAGAATTGACTCACACAATAAAATTCTTTATGCCCGACATGCGGATCAGAGGAACGCAACCTTCCAAAGGGTTCTACAGACAGGGAGCGAGTTCGATCGTGAAGTTCGATCGATGCTATTGAGAGCAAATCTTATCAAACACGACTATAACCAACGAGGTGGTTCCAGGAAAATCTGATATATTTTTTTAAATCTGGGCTGCTGGTAGGACCATGTTTTTCTTCTTCATTGGCTTTCATTGTGAGCCATGAGAGAGGTTGCATAGAATCAAAAATGAGATTAAAATTGGAAGTTCCATGAGAGGTGGTGGATTGTTAGAACACATACATACTGCTTGCTGGCTGCTGGTTTTGTGAATACTGATTTTTCTCAGTTGCAGTTCTTGATTCTTCCAGTTTTTCCTTACAGATTCCAGGGAAACATCTTCAACTTTGGCTGTAAGTTGAATATTCCAAGTAATGCTAGTCTCTGTCCTTTGTTTTTTTC

Coding sequence (CDS)

CATTATGCATCATGCCTGGACTACCTTGGGAATCTTAAACCCAACTTATTGCTTGACATTCATTTACATGACCATGTTGAGACGCTCTACGATCAAATACGCCACAAGGCTCTCATCCAATACACTCTCCCATTTGTATCTGTTGATCTCCACATGATGGCTAATGCTTTTAAAACGAGTGTTACTGGTCTTGAGAAAGAGCTGGAGACACTAATCACCAATAATCAAATCCAGGCCAGAATTGACTCACACAATAAAATTCTTTATGCCCGACATGCGGATCAGAGGAACGCAACCTTCCAAAGGGTTCTACAGACAGGGAGCGAGTTCGATCGTGAAGTTCGATCGATGCTATTGAGAGCAAATCTTATCAAACACGACTATAACCAACGAGGTGGTTCCAGGAAAATCTGA

Protein sequence

HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI

Homology

[Close]

BLAST of Carg24957 vs. NCBI nr
Match: KAG7028632.1 (COP9 signalosome complex subunit 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.4 bits (703), Expect = 2.7e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR
Sbjct: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 121 ANLIKHDYNQRGGSRKI 137

[Close]

BLAST of Carg24957 vs. NCBI nr
Match: XP_022974152.1 (COP9 signalosome complex subunit 1-like [Cucurbita maxima] >XP_022975364.1 COP9 signalosome complex subunit 1-like isoform X1 [Cucurbita maxima] >XP_022975365.1 COP9 signalosome complex subunit 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 275.4 bits (703), Expect = 2.7e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR
Sbjct: 374 VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. NCBI nr
Match: XP_023539767.1 (COP9 signalosome complex subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.4 bits (703), Expect = 2.7e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR
Sbjct: 374 VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. NCBI nr
Match: KAG6597162.1 (COP9 signalosome complex subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 275.4 bits (703), Expect = 2.7e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR
Sbjct: 374 VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. NCBI nr
Match: XP_022939807.1 (COP9 signalosome complex subunit 1-like [Cucurbita moschata])

HSP 1 Score: 274.2 bits (700), Expect = 5.9e-70
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRS+LLR
Sbjct: 374 VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSLLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. ExPASy Swiss-Prot
Match: P45432 (COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CSN1 PE=1 SV=2)

HSP 1 Score: 221.1 bits (562), Expect = 7.8e-57
Identity = 109/134 (81.34%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 2   YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSV 61
           YASCL+YL +LK NLLLDIHLHDHV+TLYDQIR KALIQYTLPFVSVDL  MA+AFKTSV
Sbjct: 307 YASCLEYLASLKSNLLLDIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSV 366

Query: 62  TGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLRA 121
           +GLEKELE LIT+NQIQARIDSHNKILYARHADQRNATFQ+VLQ G+EFDR+VR+MLLRA
Sbjct: 367 SGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQMGNEFDRDVRAMLLRA 426

Query: 122 NLIKHDYNQRGGSR 136
           NL+KH+Y+ R   +
Sbjct: 427 NLLKHEYHARSARK 440

[Close]

BLAST of Carg24957 vs. ExPASy Swiss-Prot
Match: Q54QX3 (COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum OX=44689 GN=csn1 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.4e-35
Identity = 73/126 (57.94%), Postives = 94/126 (74.60%), Query Frame = 0


Query: 2   YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSV 61
           Y SCL YL  +KP LLLDIHL+ HVE LY +IR KAL+QY  P+ SVD+++MA+AF T+V
Sbjct: 295 YGSCLKYLDKMKPILLLDIHLYKHVEILYQRIRSKALVQYFSPYQSVDMNIMASAFNTTV 354

Query: 62  TGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLRA 121
           T LEKE+  LI  N+IQARIDSHNK LYAR ADQR  TF++ +Q GS+F     S+LLR 
Sbjct: 355 TLLEKEISKLIMENEIQARIDSHNKRLYARKADQRTTTFEKTVQVGSDFQNSSNSLLLRL 414

Query: 122 NLIKHD 128
            ++ ++
Sbjct: 415 EMLNNN 420

[Close]

BLAST of Carg24957 vs. ExPASy Swiss-Prot
Match: Q6NRT5 (COP9 signalosome complex subunit 1 OS=Xenopus laevis OX=8355 GN=csn1 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.0e-32
Identity = 71/135 (52.59%), Postives = 95/135 (70.37%), Query Frame = 0


Query: 2   YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSV 61
           YASCL  L  +K NLLLD++L  HV TLY QIR++ALIQY  P+VS D++ MA AF T+V
Sbjct: 334 YASCLKMLDEIKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMYKMATAFNTTV 393

Query: 62  TGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLRA 121
           + LE EL  LI    I ARIDSH+KILYAR  DQR+ TF++ LQ G EF R  ++M+LRA
Sbjct: 394 SALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLQMGREFQRRAKAMILRA 453

Query: 122 NLIKHDYNQRGGSRK 137
            ++++  + +   R+
Sbjct: 454 AVLRNQIHVKSPPRE 468

[Close]

BLAST of Carg24957 vs. ExPASy Swiss-Prot
Match: Q99LD4 (COP9 signalosome complex subunit 1 OS=Mus musculus OX=10090 GN=Gps1 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.6e-32
Identity = 71/135 (52.59%), Postives = 93/135 (68.89%), Query Frame = 0


Query: 2   YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSV 61
           YASCL  L  +K NLLLD++L  HV TLY QIR++ALIQY  P+VS D+H MA AF T+V
Sbjct: 318 YASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTV 377

Query: 62  TGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLRA 121
             LE EL  LI    I ARIDSH+KILYAR  DQR+ TF++ L  G EF R  ++M+LRA
Sbjct: 378 AALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMILRA 437

Query: 122 NLIKHDYNQRGGSRK 137
            ++++  + +   R+
Sbjct: 438 AVLRNQIHVKSPPRE 452

[Close]

BLAST of Carg24957 vs. ExPASy Swiss-Prot
Match: Q13098 (COP9 signalosome complex subunit 1 OS=Homo sapiens OX=9606 GN=GPS1 PE=1 SV=4)

HSP 1 Score: 137.9 bits (346), Expect = 8.7e-32
Identity = 70/135 (51.85%), Postives = 93/135 (68.89%), Query Frame = 0


Query: 2   YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSV 61
           YASCL  L  +K NLLLD++L  HV TLY QIR++ALIQY  P+VS D+H MA AF T+V
Sbjct: 338 YASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTV 397

Query: 62  TGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLRA 121
             LE EL  LI    I AR+DSH+KILYAR  DQR+ TF++ L  G EF R  ++M+LRA
Sbjct: 398 AALEDELTQLILEGLISARVDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMMLRA 457

Query: 122 NLIKHDYNQRGGSRK 137
            ++++  + +   R+
Sbjct: 458 AVLRNQIHVKSPPRE 472

[Close]

BLAST of Carg24957 vs. ExPASy TrEMBL
Match: A0A6J1IK85 (COP9 signalosome complex subunit 1-like OS=Cucurbita maxima OX=3661 GN=LOC111474593 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.3e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR
Sbjct: 374 VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. ExPASy TrEMBL
Match: A0A6J1FHU8 (COP9 signalosome complex subunit 1-like OS=Cucurbita moschata OX=3662 GN=LOC111445571 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.9e-70
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRS+LLR
Sbjct: 374 VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSLLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. ExPASy TrEMBL
Match: A0A0A0L4A8 (PCI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G123210 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.4e-69
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           V GLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQ+GSEFDREVRSMLLR
Sbjct: 374 VAGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQSGSEFDREVRSMLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. ExPASy TrEMBL
Match: A0A1S3AV75 (COP9 signalosome complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103483302 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.4e-69
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           V GLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQ+GSEFDREVRSMLLR
Sbjct: 374 VAGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQSGSEFDREVRSMLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. ExPASy TrEMBL
Match: A0A6J1D2A2 (COP9 signalosome complex subunit 1 OS=Momordica charantia OX=3673 GN=LOC111016344 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.1e-69
Identity = 135/137 (98.54%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 60
           HYASCLDYLGNLK NLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS
Sbjct: 314 HYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTS 373

Query: 61  VTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 120
           V GLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR
Sbjct: 374 VAGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLR 433

Query: 121 ANLIKHDYNQRGGSRKI 138
           ANLIKHDYNQRGGSRKI
Sbjct: 434 ANLIKHDYNQRGGSRKI 450

[Close]

BLAST of Carg24957 vs. TAIR 10
Match: AT3G61140.1 (26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain )

HSP 1 Score: 221.1 bits (562), Expect = 5.5e-58
Identity = 109/134 (81.34%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 2   YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSV 61
           YASCL+YL +LK NLLLDIHLHDHV+TLYDQIR KALIQYTLPFVSVDL  MA+AFKTSV
Sbjct: 307 YASCLEYLASLKSNLLLDIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSV 366

Query: 62  TGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDREVRSMLLRA 121
           +GLEKELE LIT+NQIQARIDSHNKILYARHADQRNATFQ+VLQ G+EFDR+VR+MLLRA
Sbjct: 367 SGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQMGNEFDRDVRAMLLRA 426

Query: 122 NLIKHDYNQRGGSR 136
           NL+KH+Y+ R   +
Sbjct: 427 NLLKHEYHARSARK 440

The following BLAST results are available for this feature:

BLAST of Carg24957 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028632.1	2.7e-70	100.00	COP9 signalosome complex subunit 1, partial [Cucurbita argyrosperma subsp. argyr...	[more]
XP_022974152.1	2.7e-70	100.00	COP9 signalosome complex subunit 1-like [Cucurbita maxima] >XP_022975364.1 COP9 ...	[more]
XP_023539767.1	2.7e-70	100.00	COP9 signalosome complex subunit 1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6597162.1	2.7e-70	100.00	COP9 signalosome complex subunit 1, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022939807.1	5.9e-70	99.27	COP9 signalosome complex subunit 1-like [Cucurbita moschata]	[more]

BLAST of Carg24957 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P45432	7.8e-57	81.34	COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CSN1 PE=1 ...	[more]
Q54QX3	6.4e-35	57.94	COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum OX=44689 GN=csn1 ...	[more]
Q6NRT5	3.0e-32	52.59	COP9 signalosome complex subunit 1 OS=Xenopus laevis OX=8355 GN=csn1 PE=2 SV=1	[more]
Q99LD4	6.6e-32	52.59	COP9 signalosome complex subunit 1 OS=Mus musculus OX=10090 GN=Gps1 PE=1 SV=1	[more]
Q13098	8.7e-32	51.85	COP9 signalosome complex subunit 1 OS=Homo sapiens OX=9606 GN=GPS1 PE=1 SV=4	[more]

BLAST of Carg24957 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IK85	1.3e-70	100.00	COP9 signalosome complex subunit 1-like OS=Cucurbita maxima OX=3661 GN=LOC111474...	[more]
A0A6J1FHU8	2.9e-70	99.27	COP9 signalosome complex subunit 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A0A0L4A8	1.4e-69	98.54	PCI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G123210 PE=4 SV...	[more]
A0A1S3AV75	1.4e-69	98.54	COP9 signalosome complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103483302 PE=4 ...	[more]
A0A6J1D2A2	4.1e-69	98.54	COP9 signalosome complex subunit 1 OS=Momordica charantia OX=3673 GN=LOC11101634...	[more]

BLAST of Carg24957 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61140.1	5.5e-58	81.34	26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00753	PINT	coord: 24..107 e-value: 6.1E-19 score: 78.9
None	No IPR available	GENE3D	1.25.40.570		coord: 1..74 e-value: 2.1E-27 score: 98.1
None	No IPR available	PANTHER	PTHR14145:SF5	BNAA09G38820D PROTEIN	coord: 2..132
IPR000717	Proteasome component (PCI) domain	SMART	SM00088	PINT_4	coord: 24..107 e-value: 6.1E-19 score: 78.9
IPR000717	Proteasome component (PCI) domain	PFAM	PF01399	PCI	coord: 11..90 e-value: 4.3E-15 score: 56.1
IPR000717	Proteasome component (PCI) domain	PROSITE	PS50250	PCI	coord: 1..95 score: 17.710258
IPR019585	26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1	PANTHER	PTHR14145	26S PROTESOME SUBUNIT 6	coord: 2..132
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 19..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24957-RA	Carg24957-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0008180	COP9 signalosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000502	proteasome complex