Carg24852 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATATCGAATGGTAACCATTGGATCGATTTGCTGACAATAATTTTGTACACCGCCAGATAATTTCTGAGAATTTGCTTCTCGCAATCCCATCACACGCCGGTTTTTCTCCCAAGAACCCTTTCCCAGTTTTGCAACTTGCTATCACAACCTCTGCCGCATTCAATCTCTCGACAACTGGGACAAATCGATAGAATTAGCTCGAATTCTTCGAATCCCAGTTCCATTTCATCCATGGCCGACCATCCTGATGATTTACACGAACTTCTTGATAGTATGCCCTTCAAACTTCATCCAATCCGTTGTGGGATTCTGTTTCTTTTACGTTTTTCTTCGTGTTTGTTATGAATTCTGTTCGAATTTTCTCAGGTGCTTTGGACGATTTTCAGAAATTCGACCTTAGTCCTTCCGTTTCGAGGTTTATCGATCAATCTCTGTTGGAAACTTCCTTTTGGTAGGGTTTTTAGTTGGTTTCTTGATGTTTTTAGTTCTGTGTTCTTGTAGAAGTGGAGATGGGGCGGAGAGTAGGGCGGTTCTCCCATCTGGGGTTCAAGGTTTAGGGATGGGTTTGCCTGACCTAAGGAGCAAGAAAAAAGGGAAGCAAAAAGTTTCGAAGGAATCGCATGTCTCTGAGGCTCTTGATAAGCTCAGAGAACAGACCAGAGAGGCTGTCAAGGGGCTTGAATCAGTGACTGGTCCTAAACCTGGTGTTGAAGATTTTGGTAAAGATGCTTTGATGGAAGATTGGGTGAAGCAGTTCGAGGAGATGGCTGGCTCTCAGGTACATTGCTTCAAGCCTTTGGAACTCTTGAATGTTGAATCTGGCCTTTAATTGCATTACTTTTCCTTGTTCTATGTCTCTTGAACAATGTTTTGTGATCTCAAATGATTAGATTCTGATTAAGGGGGAGTTTGGTATGATGATGGAGGAGTGGAAAGTGTTTTTAAAAGGAGTTTTTTATGGTATTTGGTCCATAGTTAATGGTATTTGTCAAATCCCACGTCGGTTGGAGAGGAGAACGAAACACCCTTTATGAGGGTGTGGAAACCACTCTCTAGCATACATGTTTTAAAAACCTTGAGGGGAAGTCCGAAAGGGAAAGCCCAAAGAAGACAATATATGCTAGCGGTGGGCTTGGGTCGTTACGGTATTTCCTTCTGAAAATGCTTGTAGAAGAAGAGCAGGGGGTAAAGATGCTGGGATTGTGCATAATCCAAGCAGGATGTTCACTCTTGGTCCTGTTATTTGAAGCAAGTACCCTTGCTCTCTTTGTGAGGCTGGGCGTCTGGCCAGGCACCCTCTAAATCTTATTTCATTATTGAGTAACTTGTGACATTTCAGTCATTTGTTTTAGGAAGTTTAATGAGAATATGGATGGGGATTCAAAACTATTAACTTTTTCGAGGAAGTAGAGATGTAACTGTCTAAATCCACTGCTAGTAGATATTGTCCTCTTTGGGTTTTCCCTTTCGGGGGCTTCCCTTCAAGGTTTTTAAAATGCATATGCTAAGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCCCCTCTCCAACCGATGTGGGATCTCACAATCCACCTCCGTCCGGAGCTCAGCGTCCTCGCTAGCACTCTTTCCCTTCTCCAATCGACGTGGGGTCTCACAACCCCGCCCCCCTTTTGGGGCTCAGCATCCTCGCTAGCACACCGTTTAGTGTCTAACTTTGATACCATTTGTAACAACCCAAGCCCACTGCTAGAAGGTATTGTATTGTCTTCTTTGGGCTTTCCCTTTCGGACTTCCCCTCAAAGTTTTTAAAATGTGTTTGCTAGGGAGAGGTTTCCACACCCTAATAAAGAATGCTTTGTTCCCCTCTCCCAACCGATGTGGGATCTCACAAGAGATGTCTAGCTGTTGACCTTTGCATATGCTGACAATAACGAAGACTTATTCTCAGCGTTTTTTCAGAGTTTGCAAGTGTTTCTATATATTTTCTTCCTCATTTTTCAGAAAAAAGCATCTTCCATATCTTTCCAGGTCCTTTTTTATTAGAAGATTCTCTATGGAATGACAATATGATTCTTGGTTTCCCTTTATCATATCTTGCTTTAGGTCCCTCATTTATTGAGGATTTTGCCCTCAGATAGACTACGTAATGGAGTTTTAACTTGTTTTAAACGAGTTCAAATGTCTACGTTATAAGTTTTCTGTAACCCATCATTGCTAAAATTCTTCACTACTGAGAGATAGATGGCTTTGAACTCGATTGGCGAGTGCATTAAATCGATGGTAGGTACTCTGAAATAGTTGAAAATGTTCTAAATGCAGATATCTCCTAAGTTTAACCGTTTATGTAAAATAGTTAGTAGTATTATTGAATAGAATCTTAGTAAAAAGTTCATCTGGTTTGATGCATGAATAACTGTACTTGGAACTGAGATGGAGAGGATATTTCATTGAAGGAATAGCCTTATTTACAAATTGGAAGTTTTTTACACGGGGGAACCAGTAGAACCTTGTTAGATCCCACATTGGTTGAGGAGGGGAACAGAGCATTCTTTATAAGGATGTGGAAACCTCTCCCTATCAGACGCGTTTTAAAACCTTGAGGGGAAATGTAGAAGGAAAAACCCAAAGAGGACAATATCTGCTAGCGGTGGACTTGGGCGGTTGCAAATGGTATCAGAGATAGTTACCGGGCGATGTGCCAACGAGGACACTGTGCCCCAAGGGGGGTGGATTGTTAGATCCTATATCGGTTGGAGAGGGGAACGAAATATTCCTTATAAGGGTGTGGAAACCTCTCCCTATCAAATGTGTTTTAAAACCTTGAGGGGAAGTCCATAAGGAAAAACCCAAAGAGGACAATATCTGCTAGCGGTGGACTTGGGTGGTTACAAATGGTATCAGAGCTAGTTACCAGGCGGTGTGCCAACGAGGACGCTGGGCCCCAAGGGGGGTGGATTGTTAGATCCTATATCGGTTGGAGAGGGGAACGAAGTATTTCTTATAAGGGTGTGGAAACCTCTCCCTATCATACGTGTTTTAAAACCTTGAGGGGAAGCCCGGAAGGGAAAGCTCAAAGAGGACAATATTTGCTAGCGGTGGGTTTGGGTTGTTACACTCCTTTTCTGCAAGAAAGAGCTGTAGAAGGGTTTTCTTCGATCATTGTTCTTTCGAGTAGTCCTAAGCGATTTCATGGTTCTGCATTGGAATCACTTATCTTACCCCTCAACAATCATTTTGTCTTCACTCCTTTGGGCCATGTTCTAGGCTTAACAAGAGGAGTTATTCACTTGACAAAGGATCGTCCACCTCGTGGTGACGTCTTTGTGATTGACTCTGAGGTAAGTTTGAGTCGTGTGGAATCAGTCATTCAGCCAACGGATTTCAATACTGAGGTTGATGTTTTTGAAGTTTTTTCGAAAGTCTTGCCTTATTATTTCAGGATCGTGACAAGAAGAAGGAAACCGCATCGTTCATGTCGGCCAAATTTTCTGTGTTGATAGAATCTTGTGGTTTCGGGTTTTTTAAGGTTTGTCGTGGGTTGGTGATCGGTTCTTCGCTTTCTTTGGAAGACTTAAAGTAGTTTTTAATTTTTTAGTGTTTGGTGGCGTGAGATCTCACATCGGTTGGAGAGGGGAGGGGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGTATAAACACGTTTTAAAAACCTTGAAGGGAAGCCCGAAAGGGAAAACCTAAATAGGACAATATCCGCTAGTGGTGGACTTAGATTATCATTGGTGGAGGCCTTATTTATAGTTTCCTCGTTCACTTGCAAGCCCGCTAAGTTTTTCGGATAAAGTTTTTGGCCATTTTTCCATTTGAGTCTTACCATGAATTTTTAACGTGCACCATTTGTTAGGACATGGAATCCATTGTTGAGACCATGATGCAACAACTTTTATCGAAAGAGATCCTCCATGAACCCATGAAAGAAATAGGAGAAAGATATCCCAAGTGGTTGGAGGAGCATAAAGCAAGTTTGAGCAAAGAAGAATACGATCGCTACTCTCAGCAATACGTACTGATAAAAGATCTCAACATCGTGTACGAACGTGAACCCGACAACTTCAGTAAAATCGTTGAGCTCATGCAGAAAATGCAAGAATGTGGTCAGCCACCAAATGACATCGTGAAAGAACTGGCACCTGATTTCGACTTAACGAATCTTGCACAACTGTGAGTAGATTCTCCCCATTCTCATCTCTCGTTCGTTCTTTTCGTATCGTTCGTCATGAACATATTTTAACGAATATACTCTCGTTCTCTCGATATATATATATATATATGTGTGTGCAGGTCTCCAGAGATGTTGGAGTCTCAGGCAAATTGTTGTATAATGTGAGGTAATGGTAATGCTTTTGGATGTGATCTGATTTGTGGTGCTGCTTTCCTTCCATTGATTTTCTCATATTTGCTCAGAAATATTGTTAAATCTCCAAGAAATTACTTTGTTCAATAAATAATTATATATGTTGTTAAGTTTCATAGTTTTTAGTTTATACTCAAATCTTATAATTATACCTT AATATCGAATGGTAACCATTGGATCGATTTGCTGACAATAATTTTGTACACCGCCAGATAATTTCTGAGAATTTGCTTCTCGCAATCCCATCACACGCCGGTTTTTCTCCCAAGAACCCTTTCCCAGTTTTGCAACTTGCTATCACAACCTCTGCCGCATTCAATCTCTCGACAACTGGGACAAATCGATAGAATTAGCTCGAATTCTTCGAATCCCAGTTCCATTTCATCCATGGCCGACCATCCTGATGATTTACACGAACTTCTTGATAGTGCTTTGGACGATTTTCAGAAATTCGACCTTAGTCCTTCCGTTTCGAGAAGTGGAGATGGGGCGGAGAGTAGGGCGGTTCTCCCATCTGGGGTTCAAGGTTTAGGGATGGGTTTGCCTGACCTAAGGAGCAAGAAAAAAGGGAAGCAAAAAGTTTCGAAGGAATCGCATGTCTCTGAGGCTCTTGATAAGCTCAGAGAACAGACCAGAGAGGCTGTCAAGGGGCTTGAATCAGTGACTGGTCCTAAACCTGGTGTTGAAGATTTTGGTAAAGATGCTTTGATGGAAGATTGGGTGAAGCAGTTCGAGGAGATGGCTGGCTCTCAGGACATGGAATCCATTGTTGAGACCATGATGCAACAACTTTTATCGAAAGAGATCCTCCATGAACCCATGAAAGAAATAGGAGAAAGATATCCCAAGTGGTTGGAGGAGCATAAAGCAAGTTTGAGCAAAGAAGAATACGATCGCTACTCTCAGCAATACGTACTGATAAAAGATCTCAACATCGTGTACGAACGTGAACCCGACAACTTCAGTAAAATCGTTGAGCTCATGCAGAAAATGCAAGAATGTGGTCAGCCACCAAATGACATCGTGAAAGAACTGGCACCTGATTTCGACTTAACGAATCTTGCACAACTGTCTCCAGAGATGTTGGAGTCTCAGGCAAATTGTTGTATAATGTGAGGTAATGGTAATGCTTTTGGATGTGATCTGATTTGTGGTGCTGCTTTCCTTCCATTGATTTTCTCATATTTGCTCAGAAATATTGTTAAATCTCCAAGAAATTACTTTGTTCAATAAATAATTATATATGTTGTTAAGTTTCATAGTTTTTAGTTTATACTCAAATCTTATAATTATACCTT ATGGCCGACCATCCTGATGATTTACACGAACTTCTTGATAGTGCTTTGGACGATTTTCAGAAATTCGACCTTAGTCCTTCCGTTTCGAGAAGTGGAGATGGGGCGGAGAGTAGGGCGGTTCTCCCATCTGGGGTTCAAGGTTTAGGGATGGGTTTGCCTGACCTAAGGAGCAAGAAAAAAGGGAAGCAAAAAGTTTCGAAGGAATCGCATGTCTCTGAGGCTCTTGATAAGCTCAGAGAACAGACCAGAGAGGCTGTCAAGGGGCTTGAATCAGTGACTGGTCCTAAACCTGGTGTTGAAGATTTTGGTAAAGATGCTTTGATGGAAGATTGGGTGAAGCAGTTCGAGGAGATGGCTGGCTCTCAGGACATGGAATCCATTGTTGAGACCATGATGCAACAACTTTTATCGAAAGAGATCCTCCATGAACCCATGAAAGAAATAGGAGAAAGATATCCCAAGTGGTTGGAGGAGCATAAAGCAAGTTTGAGCAAAGAAGAATACGATCGCTACTCTCAGCAATACGTACTGATAAAAGATCTCAACATCGTGTACGAACGTGAACCCGACAACTTCAGTAAAATCGTTGAGCTCATGCAGAAAATGCAAGAATGTGGTCAGCCACCAAATGACATCGTGAAAGAACTGGCACCTGATTTCGACTTAACGAATCTTGCACAACTGTCTCCAGAGATGTTGGAGTCTCAGGCAAATTGTTGTATAATGTGA MADHPDDLHELLDSALDDFQKFDLSPSVSRSGDGAESRAVLPSGVQGLGMGLPDLRSKKKGKQKVSKESHVSEALDKLREQTREAVKGLESVTGPKPGVEDFGKDALMEDWVKQFEEMAGSQDMESIVETMMQQLLSKEILHEPMKEIGERYPKWLEEHKASLSKEEYDRYSQQYVLIKDLNIVYEREPDNFSKIVELMQKMQECGQPPNDIVKELAPDFDLTNLAQLSPEMLESQANCCIM Homology
BLAST of Carg24852 vs. NCBI nr
Match: XP_022923316.1 (peroxisome biogenesis protein 19-2-like [Cucurbita moschata] >KAG7015722.1 Peroxisome biogenesis protein 19-1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 473.0 bits (1216), Expect = 1.5e-129 Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0
BLAST of Carg24852 vs. NCBI nr
Match: KAG6577685.1 (Peroxisome biogenesis protein 19-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 471.5 bits (1212), Expect = 4.5e-129 Identity = 241/242 (99.59%), Postives = 242/242 (100.00%), Query Frame = 0
BLAST of Carg24852 vs. NCBI nr
Match: XP_022965158.1 (peroxisome biogenesis protein 19-2-like [Cucurbita maxima] >XP_023552293.1 peroxisome biogenesis protein 19-2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 469.9 bits (1208), Expect = 1.3e-128 Identity = 240/242 (99.17%), Postives = 242/242 (100.00%), Query Frame = 0
BLAST of Carg24852 vs. NCBI nr
Match: XP_038906370.1 (peroxisome biogenesis protein 19-1-like [Benincasa hispida]) HSP 1 Score: 458.0 bits (1177), Expect = 5.1e-125 Identity = 231/242 (95.45%), Postives = 239/242 (98.76%), Query Frame = 0
BLAST of Carg24852 vs. NCBI nr
Match: XP_008448848.1 (PREDICTED: peroxisome biogenesis protein 19-1-like [Cucumis melo] >KAA0041087.1 peroxisome biogenesis protein 19-1-like [Cucumis melo var. makuwa] >TYK12023.1 peroxisome biogenesis protein 19-1-like [Cucumis melo var. makuwa]) HSP 1 Score: 449.1 bits (1154), Expect = 2.4e-122 Identity = 227/242 (93.80%), Postives = 238/242 (98.35%), Query Frame = 0
BLAST of Carg24852 vs. ExPASy Swiss-Prot
Match: Q94EI3 (Peroxisome biogenesis protein 19-2 OS=Arabidopsis thaliana OX=3702 GN=PEX19-2 PE=1 SV=1) HSP 1 Score: 317.0 bits (811), Expect = 1.8e-85 Identity = 163/244 (66.80%), Postives = 201/244 (82.38%), Query Frame = 0
BLAST of Carg24852 vs. ExPASy Swiss-Prot
Match: Q9SRQ3 (Peroxisome biogenesis protein 19-1 OS=Arabidopsis thaliana OX=3702 GN=PEX19-1 PE=1 SV=1) HSP 1 Score: 315.8 bits (808), Expect = 4.1e-85 Identity = 165/246 (67.07%), Postives = 197/246 (80.08%), Query Frame = 0
BLAST of Carg24852 vs. ExPASy Swiss-Prot
Match: Q9QYU1 (Peroxisomal biogenesis factor 19 OS=Rattus norvegicus OX=10116 GN=Pex19 PE=1 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 3.4e-15 Identity = 76/284 (26.76%), Postives = 132/284 (46.48%), Query Frame = 0
BLAST of Carg24852 vs. ExPASy Swiss-Prot
Match: Q60415 (Peroxisomal biogenesis factor 19 OS=Cricetulus griseus OX=10029 GN=PEX19 PE=1 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 5.8e-15 Identity = 75/284 (26.41%), Postives = 130/284 (45.77%), Query Frame = 0
BLAST of Carg24852 vs. ExPASy Swiss-Prot
Match: P40855 (Peroxisomal biogenesis factor 19 OS=Homo sapiens OX=9606 GN=PEX19 PE=1 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 7.6e-15 Identity = 76/289 (26.30%), Postives = 133/289 (46.02%), Query Frame = 0
BLAST of Carg24852 vs. ExPASy TrEMBL
Match: A0A6J1E6H4 (peroxisome biogenesis protein 19-2-like OS=Cucurbita moschata OX=3662 GN=LOC111431048 PE=4 SV=1) HSP 1 Score: 473.0 bits (1216), Expect = 7.4e-130 Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0
BLAST of Carg24852 vs. ExPASy TrEMBL
Match: A0A6J1HN20 (peroxisome biogenesis protein 19-2-like OS=Cucurbita maxima OX=3661 GN=LOC111465099 PE=4 SV=1) HSP 1 Score: 469.9 bits (1208), Expect = 6.3e-129 Identity = 240/242 (99.17%), Postives = 242/242 (100.00%), Query Frame = 0
BLAST of Carg24852 vs. ExPASy TrEMBL
Match: A0A5D3CJA6 (Peroxisome biogenesis protein 19-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00320 PE=4 SV=1) HSP 1 Score: 449.1 bits (1154), Expect = 1.1e-122 Identity = 227/242 (93.80%), Postives = 238/242 (98.35%), Query Frame = 0
BLAST of Carg24852 vs. ExPASy TrEMBL
Match: A0A1S3BKN2 (peroxisome biogenesis protein 19-1-like OS=Cucumis melo OX=3656 GN=LOC103490885 PE=4 SV=1) HSP 1 Score: 449.1 bits (1154), Expect = 1.1e-122 Identity = 227/242 (93.80%), Postives = 238/242 (98.35%), Query Frame = 0
BLAST of Carg24852 vs. ExPASy TrEMBL
Match: A0A0A0L283 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020030 PE=4 SV=1) HSP 1 Score: 438.3 bits (1126), Expect = 2.0e-119 Identity = 225/242 (92.98%), Postives = 235/242 (97.11%), Query Frame = 0
BLAST of Carg24852 vs. TAIR 10
Match: AT5G17550.1 (peroxin 19-2 ) HSP 1 Score: 317.0 bits (811), Expect = 1.3e-86 Identity = 163/244 (66.80%), Postives = 201/244 (82.38%), Query Frame = 0
BLAST of Carg24852 vs. TAIR 10
Match: AT3G03490.1 (peroxin 19-1 ) HSP 1 Score: 315.8 bits (808), Expect = 2.9e-86 Identity = 165/246 (67.07%), Postives = 197/246 (80.08%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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