Carg24826 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24826
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr16: 6320664 .. 6321555 (+)
RNA-Seq Expression	Carg24826
Synteny	Carg24826

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGGGATACATTCCTTCAATAGGAACAAATCTAAATATATATTCTTAAATATTATTTTTGAAGTATTAACTATTTCTATTTAAAATTAATAATATTTTTTTAAAATTTAAATTTAAAAATATTATTGAAATTTTCATTTAAAAAAATAAAATAGTAGTATATTTATTGAATCCATATGAAACAAATTCGAAAGAAAAAAGGAAAAAAGGAAATTTATTAGCAAATTTACAAGGAGACGACACATCGTAGTAGAGAGAGAAAAAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAATGGAACGACACTGACAGACCTTTAGGCTGACACGGACGTGCTGGCCTTCAAGATCCAATGCGTTTCGCCGTCCTTTAACAATTAACTAATTCACATATAAAGAAAAATAAAATAAAATAAATTATAAATTTATTCTCTTACAATTTTTTTATTTCTATTTAATATCTCATTAAGTTTTAAATAATATTTGGTACACTTTAAAATCTAATTAATTATTTAATAGATAGTTGAATATTTGATTATTTTTTTAAATTTAGTTAATTATAAAAATAAAATAAAATTTTATTCTACAATACATGAAATAGTATCATACTTGTTAAACTCAAAATGGAGGGCATGAAAAAAAAAAAAAAATGTAATTCCTTTAACACGTGCGAAATTGTTGGCATGTGCGAGAGAACATTCCGGCGCACGTGCAGAGCACTCGCCCGCCAGCCCAGCCCACCCGTTTCTGTTTTCGGGATCCCTCCGGCCGAAAGTAATGCTTCAGACACAAATGCTCATCTCGCAGTGGTCGATTCCAAAGGCAGCATCGGCTGGGCAATGCCTGACGCCTCTACCCATTCCAATCCCAATCTTTGA

mRNA sequence

ATGAAAGCACTCGCCCGCCAGCCCAGCCCACCCGTTTCTGTTTTCGGGATCCCTCCGGCCGAAAGTAATGCTTCAGACACAAATGCTCATCTCGCAGTGGTCGATTCCAAAGGCAGCATCGGCTGGGCAATGCCTGACGCCTCTACCCATTCCAATCCCAATCTTTGA

Coding sequence (CDS)

ATGAAAGCACTCGCCCGCCAGCCCAGCCCACCCGTTTCTGTTTTCGGGATCCCTCCGGCCGAAAGTAATGCTTCAGACACAAATGCTCATCTCGCAGTGGTCGATTCCAAAGGCAGCATCGGCTGGGCAATGCCTGACGCCTCTACCCATTCCAATCCCAATCTTTGA

Protein sequence

MKALARQPSPPVSVFGIPPAESNASDTNAHLAVVDSKGSIGWAMPDASTHSNPNL

Homology

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BLAST of Carg24826 vs. NCBI nr
Match: KAG7015512.1 (hypothetical protein SDJN02_23148, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.6 bits (283), Expect = 5.4e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MKALARQPSPPVSVFGIPPAESNASDTNAHLAVVDSKGSIGWAMPDASTHSNPNL 56
          MKALARQPSPPVSVFGIPPAESNASDTNAHLAVVDSKGSIGWAMPDASTHSNPNL
Sbjct: 1  MKALARQPSPPVSVFGIPPAESNASDTNAHLAVVDSKGSIGWAMPDASTHSNPNL 55

The following BLAST results are available for this feature:

BLAST of Carg24826 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015512.1	5.4e-22	100.00	hypothetical protein SDJN02_23148, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg24826 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24826 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24826 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24826-RA	Carg24826-RA	mRNA