Carg24779 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24779
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 11513679 .. 11517355 (-)
RNA-Seq ExpressionCarg24779
SyntenyCarg24779
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAATTTCTGTTCAAAGTACAGAAGTGTTCTTAGTGCTGTTAATTCTTAACTTTTATAGGGGGCGGGTCAGCACGCAGGAGGTTTTCTCCTTTGTCCAACTCTGATTTAGTTCCTGGTAAATATGAAGGTAATTGAGTTTCTAATTAGTACTTCTCTGGTTCCTCTGCCCTCTCTTCAGATCTCTGGTTTTCATGTTGGAAAATCATGTATCTGACGGCAACATGTATGCATATGCATGTATTTTGTGTGGGTTGTAGGGGGGCTTAAATTATGGGAAGGCGCATTGGATCTTGTCAAAGCTCTCTGTGGAGAGGTTGAAAATGGTCATTTGTCATTTGCTGGGAAGCGAGTTTTAGAGGTGGGCATTTGATATTCAGGTGATTATACACTGTATGGAGATTGTAGGCGAACCCATCTGCATACTAAAATGTGGATGTTGTTAGAGCATTTTGTTCGTTCATATGTGGATAGGCTGCTTATAGAATTCCATATTCGAAGTTGCGATTGGATCTATTCATTAAATAGAGATAATATTGTAGAAATTTAGCATCAATATATAACAATATTTATTTACTGTGTTGCAGACTTGCTATTAATTGAACTTTAGTTGATGATTATGAAAAGTTCATATTTCAAGCGAGTTATCATCTATATCATTTTCTACAATGAAGTTTAAGTGCATGTTTGACACCCAGTTTTTTCATGCAATCCGTCAAATCTTCATAAAAAATTGCTCATGAAATATTTCTATATTAGAACAGTGTTCTTGACCGTCTAATTCGTATTATGATCTTCTATATGCATTCTTTTTCCTTTATTAAATCGAGATTTTAATCAAAATCACACGCAAGGAACTGGACTATTTTACATGTGTTTAATTTTCCTAGTTTTTTGAGTATGGGATTGTTTTCTTTTTCTTGATGTTTTGTTGGTAAGGACCTTTAGATGCCCGTATTGCGTTGCAGTATGTCCAATATGTTCTATATTTTTTAAAAGGAAGCATCTTCTTGACATACATAAAGTCTAGTTCTCTTCCTCATTGACTTTGTCTCTATGCTTTCAGCTTGGATGTGGCCATGGTCTTCCTGGTATTTATGCATGCCTGGAGGTAAAATTTATTCTTCTGATTTGTTTCATTAAATTTGTAGATTAAATGCCGGAAAACCTCTATGGTTCTTTACATTCCTTAACACTACCCTTCCTCGCTCGTTAGGATGCAGCTGCAGTACATTTCCAGGATTTCAATGCCGAAGTCCTGAGATGCCTTACCATTCCAAATGTCACTGCCAAACCTTACAAAAAAGGCTGAAGCTTTGCCAACTAATCCAACCGAATCTGATGCTGAATCAGTAGCTTGTTACTTCGCTGGTGATTGGAGTGAAATGCATAAATTCTGCCGTTTGCGTCCGACGACAAGGAGAAGCTAAGTGAAAATTTCAATGGCTATGACATTGTTTTAATGGCGGAGACCGTTTATTCTCTTTCTACACTTAAAAAACTCTCTATAAACTTATCACACAGGTAGAAACTTATACAGATATCCATCTACTTTTGTGTCTTTATAACTTAAACGCAATTTTTTTTTTGTGTATTATAATTTTTTATGTAATGTTTTTATTTCTATATTACCTTGCATCATTATCTAATGTAGTTTTCAATGCTTTAATAGTGTTTGAGCCGTCCTCATGGAGTTGTATACATGGCTGGAAAGAAACATTACTTTGGAGTAGGAGGAGGAACCCGACGCTTTCTCTCTGTGTTAGAAAAAGAAGGTAAGCTGGTCGTACACAATTTCGATAAAATTATGCTTAAACATTATACTTCTTCCTGATTGGACAAATGAGAACTAATTTAAAATGAATTTGATATTCTTGTGGGGTCTTCCATTGGAGACTCTTCTATGAATTCGTTATACACATTGCTAGCCTAAAATATCATGAGTGATGAATTTCTTCTGGGTCATTGGCTGATTTAAGACGAATGATTCCTTTTTTTTAATTCTTTTTTCTTTCTAATTTTAACTTTTTTATGAAGCAGTGAATCATTTCATTGATATGATAAAATTTACAAAAAAAAAAAAAGAAAAAGAAAAAAAGAAAAAGAAAAAAGGAAACTTGTGAGACCCAACATAGGTTGGAGTCTTTATAAGGGTGTGGAAACCTCTCTCTAATAGACGCGTTTTAAAATCCGTGAGGTTGACGGTGATACGTAATGTGCCAAAGCAGGCAATATTGGCTAGCGGTGGGTTTTAACTGTTACAAGATCGTACCCAATGAATTACAAGAAGAGGATTTGAATCGCACCCAATTAGAGTTAAGAAAGGTTTGAATGTGTTTCCACGTTTGTGAAGATAAGAGGAATCACTATCTGACTTATTCTGTGATTATATGGTTTGAGAACTAAAATTATATGTTTGTTTCCCTACAAAGTTTCCATTAATTTCAGATGGGTTTATGATTCAATCACTTTTTGAAGGGAATTATTTGTTTAATTGACTGTTTATCTTATGTGCCCTTACAGGTGAAATGGTTTCCAAACTGATTGCAGAAGTTGCTGATGGTTCGTCTAACGTTAGAGAAGTGTGGAAGATCTCATTGAAATAGGTTATAAATCCTAATCTTTCACTGAAAAGTTTTCTTTCGTTACTGGTACATGCCTGCATCAAAGTAATTCTTGTTCATGTTTTGGGATTTTTTATCTGGCACCTTTCTTCTACAAAACTTCTCAAATGATCAAAATATCTTCAATTTTGTTTTCTCTCTTTTTTAGGCAAAGATAAATTAAATTAATATAACCCAATTATAATCCTTGCACAAGGAAGCATTAGGGATGGTTTATGCAAATGATCACTGGAACGATAGCGTTCTGTATTTCTCTCCTTTGTCGAGTTCGTATCTGAAAATTATGGATCAAATCTTTTTTGTGAAGTTGAACACTGTGTTGTGTGCTCCCTTTGTTGGAAAGTATGTCATAGTTTCTTCAAGAATATTACATGCTCTAACTGTGATGAGTGGATGGATATGTCTTAGCAAAATCCTGGAAAAGAACTAAATGGATCCTTAGGTACTTACAATACTTCATGAGCATTCCTTGTATCTGATGAAAATATTTATGTATGAATTTTGCAGTTGACATGGTCAAAGAAGATCATCAATAGGTATGCGTTGAAGCTATGAACTATTATTGGCGCCCCAAATTCAGCTTATTATAGCCCATCAACACGAAAAGCAGCTGAGCACATAGAATTGGAACCTAGGGACTGCCTACTTAAGCTATGCTCAATTGGTATTTAAGGGATCATCCATGATTCGAGTTTGATTCGACGTTTTGTTAGAACATGATTAGAGGTTTGAATTTCTATCCCTGCACGTTTGAACTTGAAAAGAAAAAAAAAAAAGTTGAAGAGAGTAAAATGACACAAACTCGTGAGATCGGACATTGAACGGACTTTGAACTTCTAACTTTTGATTGATGATACAATATATTTTGAGTTGGTGATAGCCATATTAATTATGGGATGAAAAGTTCCAGAGAATCAATAGAGATCGAAGGACACTATATCGAAAAGTTTTTAGCGTAGTGTGGATGTAAGTTGAAAATATCGAACTATATAACAGGCGTTCTTTCATATCTTTTCTCATTTTCAGTAGGGGTGTGCATTCAACCCGACAACTC

mRNA sequence

ACAAATTTCTGTTCAAAGTACAGAAGTGTTCTTAGTGCTGTTAATTCTTAACTTTTATAGGGGGCGGGTCAGCACGCAGGAGGTTTTCTCCTTTGTCCAACTCTGATTTAGTTCCTGGTAAATATGAAGGGGGGCTTAAATTATGGGAAGGCGCATTGGATCTTGTCAAAGCTCTCTGTGGAGAGGTTGAAAATGGTCATTTGTCATTTGCTGGGAAGCGAGTTTTAGAGCTTGGATGTGGCCATGGTCTTCCTGGTATTTATGCATGCCTGGAGGATGCAGCTGCAGTACATTTCCAGGATTTCAATGCCGAAGTCCTGAGATGCCTTACCATTCCAAATGTCACTGCCAAACCTTACAAAAAAGGCTGAAGCTTTGCCAACTAATCCAACCGAATCTGATGCTGAATCAGTAGCTTGTTACTTCGCTGGTGATTGGAGTGAAATGCATAAATTCTGCCGTTTGCGTCCGACGACAAGGAGAAGCTAAGTGAAAATTTCAATGGCTATGACATTGTTTTAATGGCGGAGACCGTTTATTCTCTTTCTACACTTAAAAAACTCTCTATAAACTTATCACACAGTGTTTGAGCCGTCCTCATGGAGTTGTATACATGGCTGGAAAGAAACATTACTTTGGAGTAGGAGGAGGAACCCGACGCTTTCTCTCTGTGTTAGAAAAAGAAGGTGAAATGGTTTCCAAACTGATTGCAGAAGTTGCTGATGGTTCGTCTAACGTTAGAGAAGTGTGGAAGATCTCATTGAAATAGTTGACATGGTCAAAGAAGATCATCAATAGGTATGCGTTGAAGCTATGAACTATTATTGGCGCCCCAAATTCAGCTTATTATAGCCCATCAACACGAAAAGCAGCTGAGCACATAGAATTGGAACCTAGGGACTGCCTACTTAAGCTATGCTCAATTGGTATTTAAGGGATCATCCATGATTCGAGTTTGATTCGACGTTTTGTTAGAACATGATTAGAGGTTTGAATTTCTATCCCTGCACGTTTGAACTTGAAAAGAAAAAAAAAAAAGTTGAAGAGAGTAAAATGACACAAACTCGTGAGATCGGACATTGAACGGACTTTGAACTTCTAACTTTTGATTGATGATACAATATATTTTGAGTTGGTGATAGCCATATTAATTATGGGATGAAAAGTTCCAGAGAATCAATAGAGATCGAAGGACACTATATCGAAAAGTTTTTAGCGTAGTGTGGATGTAAGTTGAAAATATCGAACTATATAACAGGCGTTCTTTCATATCTTTTCTCATTTTCAGTAGGGGTGTGCATTCAACCCGACAACTC

Coding sequence (CDS)

ATGTGGCCATGGTCTTCCTGGTATTTATGCATGCCTGGAGGATGCAGCTGCAGTACATTTCCAGGATTTCAATGCCGAAGTCCTGAGATGCCTTACCATTCCAAATGTCACTGCCAAACCTTACAAAAAAGGCTGAAGCTTTGCCAACTAATCCAACCGAATCTGATGCTGAATCAGTAG

Protein sequence

MWPWSSWYLCMPGGCSCSTFPGFQCRSPEMPYHSKCHCQTLQKRLKLCQLIQPNLMLNQ
Homology
[Close]
BLAST of Carg24779 vs. NCBI nr
Match: KAG7018528.1 (hypothetical protein SDJN02_20397 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.3 bits (347), Expect = 2.2e-29
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MWPWSSWYLCMPGGCSCSTFPGFQCRSPEMPYHSKCHCQTLQKRLKLCQLIQPNLMLNQ 60
          MWPWSSWYLCMPGGCSCSTFPGFQCRSPEMPYHSKCHCQTLQKRLKLCQLIQPNLMLNQ
Sbjct: 1  MWPWSSWYLCMPGGCSCSTFPGFQCRSPEMPYHSKCHCQTLQKRLKLCQLIQPNLMLNQ 59

The following BLAST results are available for this feature:
BLAST of Carg24779 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018528.12.2e-29100.00hypothetical protein SDJN02_20397 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg24779 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24779 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24779 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24779-RACarg24779-RAmRNA