Carg24746 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24746
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 5719439 .. 5721078 (+)
RNA-Seq ExpressionCarg24746
SyntenyCarg24746
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCATATAACAATATTGTTATATGTATTACTTTTCGAGAGCTTCTTACTGTATTCATGATGCTGGTCGGGTCGGTAAGTATTTCTCGTCTTTCCTTGTTATATGTTTCCTTTTCTAGAGCTTTTCTCTGTATTCATGATGTTGATCTGGTTGGTAAGTACTCATCGTCTTTCCTTGTTATATGTATTACTGTATTCATGATGCTAGTCAGGTCGGTAAGTGCTCGTCGTCTTTCCTTATTATACGTAGTCCTTTTCGAGAGCTTTTCTTTGTATTCATGATGCTGATCAGATCGGTAAGTACTCATTGTCTTTCCTTGTTATACGTATTACTGTATTCATGATGCTGGTTGGGTCGGTAAGTACTCGTCGTCTTTCCTTATCGAGAGTTTTTCTCTGTATCCATGATGCTGATCAGGTCGGTAAGTACTCATCGTCTTTCCTTGTTATATGTATTATTGTATTCATGATGCTAATTGGGTTGGTAAGTACTCGTCGTCTTTCCTTATTATACGTATTCCTTTTCGAGAGCTTTTCTCTGTATTCATGATGCTGATCTGGCCGATAAGTACTCATCGTCTTTCCTTGTTATACGTATTATTGTATTCATGATGCTGGTCGGGTCGTTAAGTACTTATCGTCTTTCCTTGTTATACGTATTCCTTTTCGAGAGCTTCTCACTGTATTCATGATGCTGATTTGGTTGGTAAGTACTCATCGTCTTTCCTTGTTATACGTATTACTGTATTCATGATGTTGGTCAGGTCAGTAAGTACTCATCGTCTTTCCTTGTTATACATATTACTGTATTCATGATGTTGGTCAGATCGGTAAGTACTCTTCGTCTTTCCTTATTATACGTATTCCTTTTCGAGAGCTTCTCACTGTATTCATGATTCTGATCTGGACGGTAAGTACTCATTGTCTTTCCTTGTATACGTATATTACTGTATTCATGATGCTCGTCAGGTTGGTAAGTTCGTTGTCTTTCCTTATTATACGCATTACTTTTCGAGAGCTTCTCACTGTATTCATGATGCTGATCTGGACGGTAAGTACTCATCGTCTTTCCTTGTTATACGTATATTACTGTATTCATGATGCTCGTCAAGTCGGTAAGTTCTTTGTCTTTCCTTATTATATGCATTACTTTTTGAGAGCTTCTCACTGTATTCATGATGATGGTCGGGTCAGTAAGTACTCATTGTCTTTCCTTATTATATGTATTATTTTTCGAGAGCTTCTCACTGTATTCATGTTGTTGGTCAGGTAGGTAAAGACTCATCGTCTTTCCTTATTATATGTTTTACTTTTCGAGAGTTTCTGATTGTAGTCATGATAATGGTCGGGTCGGTAAGCACTCGTTGTCTTTCCTTGTCATGTGTATCACAATTTAATGATTCTTTGAAAGTATTATAAATGATATATCGAATTATCATATGGCTAGGATTGAGTAGAATCTAGAAACTTTTCCAATTTTACCCTTTGACCAATATGCCACGTGGCAAACAAACAATCAAGTGCTAGAGTGTAGGCTTACGTCATAACTGTTATTTTCATGTAGGTTCAGAATTTGATGAGTTGGCTGCTGGTTCTTTGCCACGTGTACATGGAAATTTCTCGTAACTAATTGGGAA

mRNA sequence

ATGAAGTCATATAACAATATTGTTATATGTATTACTTTTCGAGAGCTTCTTACTGTATTCATGATGCTGGTCGGGTCGGTCAGTAAGTACTCATCGTCTTTCCTTGTTATACATATTACTGTATTCATGATGTTGGTCAGATCGGTTCAGAATTTGATGAGTTGGCTGCTGGTTCTTTGCCACGTGTACATGGAAATTTCTCGTAACTAATTGGGAA

Coding sequence (CDS)

ATGAAGTCATATAACAATATTGTTATATGTATTACTTTTCGAGAGCTTCTTACTGTATTCATGATGCTGGTCGGGTCGGTCAGTAAGTACTCATCGTCTTTCCTTGTTATACATATTACTGTATTCATGATGTTGGTCAGATCGGTTCAGAATTTGATGAGTTGGCTGCTGGTTCTTTGCCACGTGTACATGGAAATTTCTCGTAACTAA

Protein sequence

MKSYNNIVICITFRELLTVFMMLVGSVSKYSSSFLVIHITVFMMLVRSVQNLMSWLLVLCHVYMEISRN
Homology
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BLAST of Carg24746 vs. NCBI nr
Match: KAG7024981.1 (hypothetical protein SDJN02_13801, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.8 bits (325), Expect = 9.1e-27
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MKSYNNIVICITFRELLTVFMMLVGSVSKYSSSFLVIHITVFMMLVRSVQNLMSWLLVLC 60
          MKSYNNIVICITFRELLTVFMMLVGSVSKYSSSFLVIHITVFMMLVRSVQNLMSWLLVLC
Sbjct: 1  MKSYNNIVICITFRELLTVFMMLVGSVSKYSSSFLVIHITVFMMLVRSVQNLMSWLLVLC 60

Query: 61 HVYMEISRN 70
          HVYMEISRN
Sbjct: 61 HVYMEISRN 69

The following BLAST results are available for this feature:
BLAST of Carg24746 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024981.19.1e-27100.00hypothetical protein SDJN02_13801, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg24746 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24746 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24746 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24746-RACarg24746-RAmRNA