Carg24744 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCATAAACCAGATCACAGGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCCTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA ATGGATCATAAACCAGATCACAGGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCCTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA ATGGATCATAAACCAGATCACAGGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCCTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP Homology
BLAST of Carg24744 vs. NCBI nr
Match: KAG7024984.1 (hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 222.2 bits (565), Expect = 2.1e-54 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
BLAST of Carg24744 vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_015645 [Cucumis sativus]) HSP 1 Score: 145.2 bits (365), Expect = 3.3e-31 Identity = 75/117 (64.10%), Postives = 88/117 (75.21%), Query Frame = 0
BLAST of Carg24744 vs. NCBI nr
Match: KAG6607735.1 (hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037310.1 hypothetical protein SDJN02_00935, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 126.3 bits (316), Expect = 1.6e-25 Identity = 65/104 (62.50%), Postives = 77/104 (74.04%), Query Frame = 0
BLAST of Carg24744 vs. NCBI nr
Match: KAA0048240.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D10 protein [Cucumis melo var. makuwa]) HSP 1 Score: 105.5 bits (262), Expect = 2.9e-19 Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 0
BLAST of Carg24744 vs. NCBI nr
Match: XP_010103953.1 (uncharacterized protein LOC21403113 [Morus notabilis] >EXB97656.1 hypothetical protein L484_020205 [Morus notabilis]) HSP 1 Score: 91.7 bits (226), Expect = 4.3e-15 Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 0
BLAST of Carg24744 vs. ExPASy TrEMBL
Match: A0A0A0K3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31 Identity = 75/117 (64.10%), Postives = 88/117 (75.21%), Query Frame = 0
BLAST of Carg24744 vs. ExPASy TrEMBL
Match: A0A5A7TYF3 (Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70465G00010 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19 Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 0
BLAST of Carg24744 vs. ExPASy TrEMBL
Match: W9SBP1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15 Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 0
BLAST of Carg24744 vs. ExPASy TrEMBL
Match: A0A7J6H8T3 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_016661 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 2.3e-14 Identity = 49/104 (47.12%), Postives = 71/104 (68.27%), Query Frame = 0
BLAST of Carg24744 vs. ExPASy TrEMBL
Match: A0A7J6EXD7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008234 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 3.0e-14 Identity = 45/92 (48.91%), Postives = 65/92 (70.65%), Query Frame = 0
BLAST of Carg24744 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related ) HSP 1 Score: 55.5 bits (132), Expect = 3.2e-08 Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 0
BLAST of Carg24744 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related ) HSP 1 Score: 54.7 bits (130), Expect = 5.4e-08 Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 0
BLAST of Carg24744 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 4.3e-05 Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0
BLAST of Carg24744 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). ) HSP 1 Score: 45.1 bits (105), Expect = 4.3e-05 Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0
BLAST of Carg24744 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 43.9 bits (102), Expect = 9.5e-05 Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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