Carg24744 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24744
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionFarnesyl diphosphate synthase 2
LocationCarg_Chr09: 5731901 .. 5732227 (+)
RNA-Seq ExpressionCarg24744
SyntenyCarg24744
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATAAACCAGATCACAGGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCCTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA

mRNA sequence

ATGGATCATAAACCAGATCACAGGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCCTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA

Coding sequence (CDS)

ATGGATCATAAACCAGATCACAGGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGGCACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCCTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCTGCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA

Protein sequence

MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP
Homology
BLAST of Carg24744 vs. NCBI nr
Match: KAG7024984.1 (hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222.2 bits (565), Expect = 2.1e-54
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60
           MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS
Sbjct: 1   MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60

Query: 61  CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 109
           CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP
Sbjct: 61  CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 108

BLAST of Carg24744 vs. NCBI nr
Match: KGN44385.1 (hypothetical protein Csa_015645 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-31
Identity = 75/117 (64.10%), Postives = 88/117 (75.21%), Query Frame = 0

Query: 1   MDHKPDHRAPRPIDRNNPN--------HHHKTQFTDFDLEDFKQGTNLLAS-SPSRSLAP 60
           MD+K DHRAPRP DRNN N        HHHK  FTD +LED KQ   +L S SP  S+A 
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  KAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 109
           + PSSAKA+CLCSPTTHIGSFRCRHHRH+GM+RG SVGSNLS+L  K T+++ S+SP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

BLAST of Carg24744 vs. NCBI nr
Match: KAG6607735.1 (hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037310.1 hypothetical protein SDJN02_00935, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.3 bits (316), Expect = 1.6e-25
Identity = 65/104 (62.50%), Postives = 77/104 (74.04%), Query Frame = 0

Query: 1   MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60
           MDHKPDHRAPRP  R++ +HH+K  FTDFDLED K+   +L S    S   K   +AK S
Sbjct: 1   MDHKPDHRAPRPTHRHSLDHHNKIGFTDFDLEDLKRSPRVLVSPSLHSSPQKVSPAAKGS 60

Query: 61  CLCSPTTHIGSFRCRHHRHT-GMLRGRSVGSNLSELAHKSTDLM 104
           CLCSPTTHIGSFRCRHHR + G+LRG SVGSNLS+L  KS++ M
Sbjct: 61  CLCSPTTHIGSFRCRHHRRSAGILRGGSVGSNLSDLDRKSSEFM 104

BLAST of Carg24744 vs. NCBI nr
Match: KAA0048240.1 (putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D10 protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-19
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 0

Query: 27  TDFDLEDFKQGTNLLASSPS-RSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRG 86
           T+ +L D K   + L  SPS  S A K PSSAKA+CLCSPTTHIGSFRCRHHRH GM+RG
Sbjct: 4   TELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRG 63

Query: 87  RSVGSNLSELAHKSTDLMTSYSP 109
            SVGSNLS+LA K T++M  +SP
Sbjct: 64  GSVGSNLSDLARKPTEIMGPFSP 86

BLAST of Carg24744 vs. NCBI nr
Match: XP_010103953.1 (uncharacterized protein LOC21403113 [Morus notabilis] >EXB97656.1 hypothetical protein L484_020205 [Morus notabilis])

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-15
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 0

Query: 1  MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60
          MD K + R+P+ I  NN N   K +  D +L + K+ T+LLA SP    A    SS + +
Sbjct: 1  MDEKVEQRSPQKIKENNMN--FKLKIPDINLNELKKQTHLLA-SPRAQRAVTKSSSTRWN 60

Query: 61 CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHK 99
          CLCSPTTH GSFRCRHHR + MLRG SVGSNLSELA K
Sbjct: 61 CLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARK 95

BLAST of Carg24744 vs. ExPASy TrEMBL
Match: A0A0A0K3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31
Identity = 75/117 (64.10%), Postives = 88/117 (75.21%), Query Frame = 0

Query: 1   MDHKPDHRAPRPIDRNNPN--------HHHKTQFTDFDLEDFKQGTNLLAS-SPSRSLAP 60
           MD+K DHRAPRP DRNN N        HHHK  FTD +LED KQ   +L S SP  S+A 
Sbjct: 1   MDNKADHRAPRPNDRNNHNNNHNHNHHHHHKMAFTDLNLEDLKQNPRILVSPSPPSSIAA 60

Query: 61  KAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP 109
           + PSSAKA+CLCSPTTHIGSFRCRHHRH+GM+RG SVGSNLS+L  K T+++ S+SP
Sbjct: 61  RTPSSAKANCLCSPTTHIGSFRCRHHRHSGMIRGGSVGSNLSDLTRKPTEIVGSFSP 117

BLAST of Carg24744 vs. ExPASy TrEMBL
Match: A0A5A7TYF3 (Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70465G00010 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 0

Query: 27  TDFDLEDFKQGTNLLASSPS-RSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRG 86
           T+ +L D K   + L  SPS  S A K PSSAKA+CLCSPTTHIGSFRCRHHRH GM+RG
Sbjct: 4   TELNLADLKHNNHHLLVSPSPPSTATKTPSSAKANCLCSPTTHIGSFRCRHHRHAGMIRG 63

Query: 87  RSVGSNLSELAHKSTDLMTSYSP 109
            SVGSNLS+LA K T++M  +SP
Sbjct: 64  GSVGSNLSDLARKPTEIMGPFSP 86

BLAST of Carg24744 vs. ExPASy TrEMBL
Match: W9SBP1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 0

Query: 1  MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKAS 60
          MD K + R+P+ I  NN N   K +  D +L + K+ T+LLA SP    A    SS + +
Sbjct: 1  MDEKVEQRSPQKIKENNMN--FKLKIPDINLNELKKQTHLLA-SPRAQRAVTKSSSTRWN 60

Query: 61 CLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHK 99
          CLCSPTTH GSFRCRHHR + MLRG SVGSNLSELA K
Sbjct: 61 CLCSPTTHAGSFRCRHHRSSCMLRGGSVGSNLSELARK 95

BLAST of Carg24744 vs. ExPASy TrEMBL
Match: A0A7J6H8T3 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_016661 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.3e-14
Identity = 49/104 (47.12%), Postives = 71/104 (68.27%), Query Frame = 0

Query: 1   MDHKPDHR-APRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSP-SRSLAPKAPSSAK 60
           MD K + R +  P ++    + +K    + +LEDFK+ T++L  SP +R+ +    SS +
Sbjct: 12  MDTKMEQRTSSSPNNKEMSINKYKLNLPEINLEDFKKHTHILVVSPRARTPSVTKSSSTR 71

Query: 61  ASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDL 103
           ++CLCSPTTH+GSFRCRHHR  GMLRG SVGSNL++L  KS+ +
Sbjct: 72  SNCLCSPTTHVGSFRCRHHRSLGMLRGGSVGSNLADLGRKSSSI 115

BLAST of Carg24744 vs. ExPASy TrEMBL
Match: A0A7J6EXD7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008234 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.0e-14
Identity = 45/92 (48.91%), Postives = 65/92 (70.65%), Query Frame = 0

Query: 12  PIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSP-SRSLAPKAPSSAKASCLCSPTTHIG 71
           P ++    + +K    + +LEDFK+ T++L  SP +R+ +    SS +++CLCSPTTH+G
Sbjct: 9   PNNKEMSINKYKLNLPEINLEDFKKHTHILVVSPRARTPSVTKSSSTRSNCLCSPTTHVG 68

Query: 72  SFRCRHHRHTGMLRGRSVGSNLSELAHKSTDL 103
           SFRCRHHR  GMLRG SVGSNL++L  KS+ +
Sbjct: 69  SFRCRHHRSLGMLRGGSVGSNLADLGRKSSSI 100

BLAST of Carg24744 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-08
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 48  SLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHT---GMLRGRSVGSNLSELA 97
           S+     SS + +CLC+PTTH GSFRCR+HR     GM RG SV SNLS LA
Sbjct: 52  SVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSNLSMLA 103

BLAST of Carg24744 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related )

HSP 1 Score: 54.7 bits (130), Expect = 5.4e-08
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 0

Query: 56 SAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSEL 96
          S + +CLCSPTTH GSFRCR+HR   + R  S+GSNL+ L
Sbjct: 59 STRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVL 98

BLAST of Carg24744 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.3e-05
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0

Query: 46 SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSV 89
          SR L+ +  S  K +CLCSPTTH GSFRCR HR   + R +S+
Sbjct: 30 SRGLS-RQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSI 71

BLAST of Carg24744 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 45.1 bits (105), Expect = 4.3e-05
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 0

Query: 46 SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSV 89
          SR L+ +  S  K +CLCSPTTH GSFRCR HR   + R +S+
Sbjct: 30 SRGLS-RQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTKSI 71

BLAST of Carg24744 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 9.5e-05
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 0

Query: 55 SSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNL 93
          S  K  C+CSPTTH GSF+C+ HR   + R +SV +N+
Sbjct: 26 SITKTICICSPTTHPGSFKCKLHRTPSLQRNKSVETNI 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7024984.12.1e-54100.00hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN44385.13.3e-3164.10hypothetical protein Csa_015645 [Cucumis sativus][more]
KAG6607735.11.6e-2562.50hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0048240.12.9e-1965.06putative PGPS/D10 protein [Cucumis melo var. makuwa] >TYK07880.1 putative PGPS/D... [more]
XP_010103953.14.3e-1555.10uncharacterized protein LOC21403113 [Morus notabilis] >EXB97656.1 hypothetical p... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K3W31.6e-3164.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278200 PE=4 SV=1[more]
A0A5A7TYF31.4e-1965.06Putative PGPS/D10 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
W9SBP12.1e-1555.10Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020205 PE=4 SV=1[more]
A0A7J6H8T32.3e-1447.12Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_016661 PE=4 SV=1[more]
A0A7J6EXD73.0e-1448.91Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008234 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G13227.13.2e-0857.69serine-rich protein-related [more]
AT5G55980.15.4e-0860.00serine-rich protein-related [more]
AT1G67910.14.3e-0553.49unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G67910.24.3e-0553.49unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G24577.19.5e-0550.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR33132:SF48BNACNNG68960D PROTEINcoord: 44..101
NoneNo IPR availablePANTHERPTHR33132OSJNBB0118P14.9 PROTEINcoord: 44..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24744-RACarg24744-RAmRNA