Carg24681 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24681
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein RADIALIS-like 3
Location	Carg_Chr11: 5893413 .. 5893718 (+)
RNA-Seq Expression	Carg24681
Synteny	Carg24681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTTGAGATGGCATTGGCTTTGTACGACAAAGAGACGCCCGAGAGATGGCAGAACGTTGCCAAGGCCGTCAGCGGGAAGTCGGCAGACGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTAGTGATGAAGATGATCAAAGATATGAAATATGGTTTATAA

mRNA sequence

ATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTTGAGATGGCATTGGCTTTGTACGACAAAGAGACGCCCGAGAGATGGCAGAACGTTGCCAAGGCCGTCAGCGGGAAGTCGGCAGACGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTAGTGATGAAGATGATCAAAGATATGAAATATGGTTTATAA

Coding sequence (CDS)

ATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTTGAGATGGCATTGGCTTTGTACGACAAAGAGACGCCCGAGAGATGGCAGAACGTTGCCAAGGCCGTCAGCGGGAAGTCGGCAGACGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTATTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTAGTGATGAAGATGATCAAAGATATGAAATATGGTTTATAA

Protein sequence

MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL

Homology

[Close]

BLAST of Carg24681 vs. NCBI nr
Match: KAG7022282.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.8 bits (525), Expect = 8.5e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
           MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL
Sbjct: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60

Query: 61  LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL 102
           LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL
Sbjct: 61  LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL 101

[Close]

BLAST of Carg24681 vs. NCBI nr
Match: KAG6588434.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204.9 bits (520), Expect = 3.2e-49
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
           MA SSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL
Sbjct: 1   MAPSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60

Query: 61  LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL 102
           LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL
Sbjct: 61  LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL 101

[Close]

BLAST of Carg24681 vs. NCBI nr
Match: XP_022971553.1 (protein RADIALIS-like 3 [Cucurbita maxima])

HSP 1 Score: 184.1 bits (466), Expect = 5.9e-43
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM 94
          LEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSL 93

[Close]

BLAST of Carg24681 vs. NCBI nr
Match: XP_022933513.1 (protein RADIALIS-like 3 [Cucurbita moschata])

HSP 1 Score: 182.6 bits (462), Expect = 1.7e-42
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSA+EVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM 94
          LEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSL 93

[Close]

BLAST of Carg24681 vs. NCBI nr
Match: XP_023531644.1 (protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 2.9e-42
Identity = 87/93 (93.55%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSLKHLRPEAMWT KQNKLFEMALALYDKETPERWQNVAKA+SGKSADEVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTAKQNKLFEMALALYDKETPERWQNVAKAISGKSADEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM 94
          LEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSL 93

[Close]

BLAST of Carg24681 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.4e-23
Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSS+      + WT+KQNK+FE ALA+YDK+TP+RWQNVAKAV  KSA+EV+RHY+IL
Sbjct: 1  MASSSMS---SSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNY-------RAAGNGDEELRLVMKM 94
          +EDL  IE   VP+P Y       ++ G  D +LRL+  M
Sbjct: 61 VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNM 97

[Close]

BLAST of Carg24681 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-22
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSS+   +    WT KQNK FE ALA YD++TP RWQNVAK V GK+ +EV+RHYE+L
Sbjct: 1  MASSSMSS-QSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61 LEDLQRIESGCVPIPNYRAAG 82
          ++D+  IE+G VP PNYR +G
Sbjct: 61 VQDINSIENGHVPFPNYRTSG 80

[Close]

BLAST of Carg24681 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.0e-22
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MAS+S+      A WT K+NKLFE ALA YD++TP+RW NVA+AV GKSA+EV RHYE+L
Sbjct: 1  MASNSMS---SSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGN 83
          + D+  IESG  P PNYR+ GN
Sbjct: 61 IRDVNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of Carg24681 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-21
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNYR 79
          +EDL  IE+G VP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of Carg24681 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-20
Identity = 42/67 (62.69%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 15 WTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPI 74
          W+ K+NK FE ALA+YDK+TP+RW NVA+AV G++ +EV++HYEIL+ED++ IESG VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75 PNYRAAG 82
          PNYR  G
Sbjct: 71 PNYRTTG 77

[Close]

BLAST of Carg24681 vs. ExPASy TrEMBL
Match: A0A6J1I772 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111470234 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.9e-43
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM 94
          LEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSL 93

[Close]

BLAST of Carg24681 vs. ExPASy TrEMBL
Match: A0A6J1F4Y7 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111440915 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.4e-43
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSA+EVERHYEIL
Sbjct: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSAEEVERHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM 94
          LEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Sbjct: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLLKSL 93

[Close]

BLAST of Carg24681 vs. ExPASy TrEMBL
Match: A0A6J1ICR6 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.3e-34
Identity = 75/90 (83.33%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSLK  RPEA WT KQNKLFE ALALYDKE PERW N+A AV GKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLV 91
          LEDLQRIESG VPIPNYR A NGDEELRL+
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELRLL 90

[Close]

BLAST of Carg24681 vs. ExPASy TrEMBL
Match: A0A6J1C2H2 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.7e-33
Identity = 76/94 (80.85%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSLK  RPEA WT KQNKLFE ALALYDKETPERWQN+A AV GKSADEV+RHY+IL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60

Query: 61 LEDLQRIESGCVPIPNYR----AAGNGDEELRLV 91
          LEDL+RIESG VPIPNYR    AAGN DEELRL+
Sbjct: 61 LEDLRRIESGRVPIPNYRASAXAAGNADEELRLL 94

[Close]

BLAST of Carg24681 vs. ExPASy TrEMBL
Match: A0A6J1GKW1 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.5e-33
Identity = 74/90 (82.22%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSSLK  RPEA WT KQNKLFE ALALYDKETPERW N+A AV GKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLQRIESGCVPIPNYRAAGNGDEELRLV 91
          LEDL RIESG VPIPNYR   NGDEELRL+
Sbjct: 61 LEDLLRIESGRVPIPNYRGVHNGDEELRLL 90

[Close]

BLAST of Carg24681 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 108.2 bits (269), Expect = 3.9e-24
Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSS+      + WT+KQNK+FE ALA+YDK+TP+RWQNVAKAV  KSA+EV+RHY+IL
Sbjct: 1  MASSSMS---SSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNY-------RAAGNGDEELRLVMKM 94
          +EDL  IE   VP+P Y       ++ G  D +LRL+  M
Sbjct: 61 VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNM 97

[Close]

BLAST of Carg24681 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 105.1 bits (261), Expect = 3.3e-23
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MASSS+   +    WT KQNK FE ALA YD++TP RWQNVAK V GK+ +EV+RHYE+L
Sbjct: 1  MASSSMSS-QSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61 LEDLQRIESGCVPIPNYRAAG 82
          ++D+  IE+G VP PNYR +G
Sbjct: 61 VQDINSIENGHVPFPNYRTSG 80

[Close]

BLAST of Carg24681 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-22
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNYR 79
          +EDL  IE+G VP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of Carg24681 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-22
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLQRIESGCVPIPNYR 79
          +EDL  IE+G VP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of Carg24681 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-19
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 1  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEIL 60
          MAS S+        WT KQNK FE ALA+YD++TP+RW NVA+AV GK+ +E +R Y++L
Sbjct: 1  MASGSMSSY-GSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLL 60

Query: 61 LEDLQRIESGCVPIPNYR-AAGNGDE-ELRLVMKMIKDMK 99
          + D++ IE+G VP P+Y+   GN +   LR   K ++ MK
Sbjct: 61 VRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMK 99

The following BLAST results are available for this feature:

BLAST of Carg24681 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022282.1	8.5e-50	100.00	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6588434.1	3.2e-49	99.01	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022971553.1	5.9e-43	95.70	protein RADIALIS-like 3 [Cucurbita maxima]	[more]
XP_022933513.1	1.7e-42	94.62	protein RADIALIS-like 3 [Cucurbita moschata]	[more]
XP_023531644.1	2.9e-42	93.55	protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg24681 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW75	5.4e-23	55.00	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	4.6e-22	59.26	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q6NNN0	6.0e-22	60.98	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	1.7e-21	61.54	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q58FS3	1.9e-20	62.69	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of Carg24681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I772	2.9e-43	95.70	protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111470234 PE=4 SV=1	[more]
A0A6J1F4Y7	8.4e-43	94.62	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111440915 PE=4 SV=1	[more]
A0A6J1ICR6	9.3e-34	83.33	protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1	[more]
A0A6J1C2H2	2.7e-33	80.85	protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1	[more]
A0A6J1GKW1	3.5e-33	82.22	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1	[more]

BLAST of Carg24681 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19510.1	3.9e-24	55.00	RAD-like 5	[more]
AT4G39250.1	3.3e-23	59.26	RAD-like 1	[more]
AT1G75250.1	1.2e-22	61.54	RAD-like 6	[more]
AT1G75250.2	1.2e-22	61.54	RAD-like 6	[more]
AT2G21650.1	1.3e-19	47.00	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 10..74 e-value: 3.8E-20 score: 73.4
None	No IPR available	PANTHER	PTHR43952:SF29	PROTEIN RADIALIS-LIKE 3	coord: 1..80
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..80
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 15..61 e-value: 0.00155102 score: 31.777
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 15..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24681-RA	Carg24681-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003723	RNA binding