Carg24669 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24669
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionB-box zinc finger protein 20-like isoform X1
LocationCarg_Chr11: 5783682 .. 5785571 (-)
RNA-Seq ExpressionCarg24669
SyntenyCarg24669
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGGCGAAGAGCCCATAATACTTTGGCTCCATCTTCGCGTTAAATCCACCTTGTGGAAAAGGCAACGCTCAGAGGTGAAATCGAGCCAACACAAGATTCGGTTTCTTCAGTGGAAGGAAAGAAGGAAGGAAGGAAGGATCATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGCTCTGCTGATGAAGCCGCTCTTTGCCATGGCTGCGATCTCCATGTTCACCGCGCTAACAAGCTCGCCGGAAAGCACTCGAGATTCTCCCTACTTCAGCCGATCAAAATCGATTCTCCTCTTTGCGATATCTGTCAGGTATTTTTGATTCTGGCTCTGGAAAATGTTTCTGCTGCTGTGCGATTTGATTCTTTGTTTTGAGGTTTCTGTAAAATCGAATCAATGTTGCAGAGAATCTTCGCGTTCTTTTGTACCTTTCTTGGAAATATCTACTCTCTTTCGTCGGTTTCTGATCTCGCTCGTTTCTTCGATTTTTGGAGTTTGAATGATTTGGCGGAGAGGATTCTTATTTCTTTCTGCAATTTCAAATTAAAATCGATTTTGATCTCGGATTTCGTATGTAGGAACGGCGCGCGCTCGTATTCTGTCAACAAGATAGGGCAATTCTTTGCCGAGAATGCGACATTTCGATTCACGGAACGAACGAACATACGCAGAAGCACAATCGATTTCTTCTCACAGGTGTGAAGCTTTCTTCGACTTCTTTTTCGTACCAAACATCTTCGTCCTCCAATGGCTACAATGCTGCCATGGATGTTAAAACTCGAAGCTCCCACGCTTGCAGCAAGGGCCCTAAAATGGCCGCGCACGAAACCTCGAGTTCTCCTTCCGCTGAAAAAGCTGCTCTGTCGACAAGTAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGAGGTTCGTTCTCGACTAGCAGCATATCGGAATATTTGGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTCGATCCTTCCACCGCCGCTGCCAATCGTTTCTGTAAGGTTTGCAGTACGCCCTCTGCATAGATTGAGAGTACTTTCATGAACTTCCATATTCTTCTTCTTCTTCCTCTTCATCTTCATCATCATCTTCTGATGGTTCCTACTTTGGATTGGTATAGTTTAACGGCGAAATTCTGGCAACTGGGAACCAAAATCTGGAGAGGCAACAGGAATCACTAGGCATCGAAAGATTTGGCAACACCTTGGAATTTGTAGGTAAATTTTCTCAAACTGGATTTTGGAATGGAGTTGGAATCTCCATGAAAACTTGTAGAGGTGGAAAAATGGCGGTGGCTGATAAGATCATCAGCAACTTCGGCTCTGAAAACAATTCTGGTAAAATCAAAAAACAAACAGAAACCAACTTTTTGTTTGTTGCTGCTGATTTGCATATTTTACCTTACTCCCACTCTTTAGATTGCCATTTCATTTGCTGAATTTAAAGTGATTAATGATTTTATGATGAGAATGGAATCAAAATGTCTTTGGTTGTTTGGTTTGATTTGGCAACTAAAGCGACTCCATGTGTTTGGGAACATTCTCCTGTACTAAAATTAGCATCAAACACTTTTCTCACTCTCTTTTACCCATTTCATAAAACAATAGTTCAAATATAATTTTTCTTTTAGCTGGGTAAGTTTAGCACAGCTATGCTCACTTTTGACATTTAATGTTATTTACTTGTTCAATTTTGATACTAAAATTCTTTTAACAAATTTGAATTTGACTGTAAAACAATTTTAAAAAATCAAATTCTCCGCAATGGTATAGTATTGTACTCTTTGAGCATAAGTTCTCATGACTTTGCTTTTAAGCTTCTTCAAAATGTCTCACTCCAATGGAGATAGTATTCTTTGCT

mRNA sequence

AATGGCGAAGAGCCCATAATACTTTGGCTCCATCTTCGCGTTAAATCCACCTTGTGGAAAAGGCAACGCTCAGAGTTTAACGGCGAAATTCTGGCAACTGGGAACCAAAATCTGGAGAGGCAACAGGAATCACTAGGCATCGAAAGATTTGGCAACACCTTGGAATTTGTAGGTAAATTTTCTCAAACTGGATTTTGGAATGGAGTTGGAATCTCCATGAAAACTTGTAGAGGTGGAAAAATGGCGGTGGCTGATAAGATCATCAGCAACTTCGGCTCTGAAAACAATTCTGGTAAAATCAAAAAACAAACAGAAACCAACTTTTTGTTTGTTGCTGCTGATTTGCATATTTTACCTTACTCCCACTCTTTAGATTGCCATTTCATTTGCTGAATTTAAAGTGATTAATGATTTTATGATGAGAATGGAATCAAAATGTCTTTGGTTGTTTGGTTTGATTTGGCAACTAAAGCGACTCCATGTGTTTGGGAACATTCTCCTGTACTAAAATTAGCATCAAACACTTTTCTCACTCTCTTTTACCCATTTCATAAAACAATAGTTCAAATATAATTTTTCTTTTAGCTGGGTAAGTTTAGCACAGCTATGCTCACTTTTGACATTTAATGTTATTTACTTGTTCAATTTTGATACTAAAATTCTTTTAACAAATTTGAATTTGACTGTAAAACAATTTTAAAAAATCAAATTCTCCGCAATGGTATAGTATTGTACTCTTTGAGCATAAGTTCTCATGACTTTGCTTTTAAGCTTCTTCAAAATGTCTCACTCCAATGGAGATAGTATTCTTTGCT

Coding sequence (CDS)

AATGGCGAAGAGCCCATAATACTTTGGCTCCATCTTCGCGTTAAATCCACCTTGTGGAAAAGGCAACGCTCAGAGTTTAACGGCGAAATTCTGGCAACTGGGAACCAAAATCTGGAGAGGCAACAGGAATCACTAGGCATCGAAAGATTTGGCAACACCTTGGAATTTGTAGGTAAATTTTCTCAAACTGGATTTTGGAATGGAGTTGGAATCTCCATGAAAACTTGTAGAGGTGGAAAAATGGCGGTGGCTGATAAGATCATCAGCAACTTCGGCTCTGAAAACAATTCTGGTAAAATCAAAAAACAAACAGAAACCAACTTTTTGTTTGTTGCTGCTGATTTGCATATTTTACCTTACTCCCACTCTTTAGATTGCCATTTCATTTGCTGA

Protein sequence

NGEEPIILWLHLRVKSTLWKRQRSEFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKTCRGGKMAVADKIISNFGSENNSGKIKKQTETNFLFVAADLHILPYSHSLDCHFIC
Homology
[Close]
BLAST of Carg24669 vs. NCBI nr
Match: KAG7022270.1 (hypothetical protein SDJN02_16001, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270.4 bits (690), Expect = 8.1e-69
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   NGEEPIILWLHLRVKSTLWKRQRSEFNGEILATGNQNLERQQESLGIERFGNTLEFVGKF 60
           NGEEPIILWLHLRVKSTLWKRQRSEFNGEILATGNQNLERQQESLGIERFGNTLEFVGKF
Sbjct: 1   NGEEPIILWLHLRVKSTLWKRQRSEFNGEILATGNQNLERQQESLGIERFGNTLEFVGKF 60

Query: 61  SQTGFWNGVGISMKTCRGGKMAVADKIISNFGSENNSGKIKKQTETNFLFVAADLHILPY 120
           SQTGFWNGVGISMKTCRGGKMAVADKIISNFGSENNSGKIKKQTETNFLFVAADLHILPY
Sbjct: 61  SQTGFWNGVGISMKTCRGGKMAVADKIISNFGSENNSGKIKKQTETNFLFVAADLHILPY 120

Query: 121 SHSLDCHFIC 131
           SHSLDCHFIC
Sbjct: 121 SHSLDCHFIC 130

[Close]
BLAST of Carg24669 vs. NCBI nr
Match: KAG6588424.1 (B-box zinc finger protein 20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217.2 bits (552), Expect = 8.1e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 26  FNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKTCRGGKMAVAD 85
           FNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKTCRGGKMAVAD
Sbjct: 173 FNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKTCRGGKMAVAD 232

Query: 86  KIISNFGSENNSGKIKKQTETNFLFVAADLHILPYSHSLDCHFIC 131
           KIISNFGSENNSGKIKKQTETNFLFVAADLHILPYSHSLDCHFIC
Sbjct: 233 KIISNFGSENNSGKIKKQTETNFLFVAADLHILPYSHSLDCHFIC 277

[Close]
BLAST of Carg24669 vs. NCBI nr
Match: XP_022926713.1 (B-box zinc finger protein 20-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 210.7 bits (535), Expect = 7.6e-51
Identity = 104/115 (90.43%), Postives = 107/115 (93.04%), Query Frame = 0 

Query: 16  STLWKRQRSEFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT 75
           ST    +  +FNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT
Sbjct: 199 STAAANRFCKFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT 258

Query: 76  CRGGKMAVADKIISNFGSENNSGKIKKQTETNFLFVAADLHILPYSHSLDCHFIC 131
           CRG KMAVADKIISNF SENNSGKIKKQTETNFLFVAADLH+LPYSHSLDCHFIC
Sbjct: 259 CRGEKMAVADKIISNFCSENNSGKIKKQTETNFLFVAADLHVLPYSHSLDCHFIC 313

[Close]
BLAST of Carg24669 vs. NCBI nr
Match: XP_023531436.1 (B-box zinc finger protein 20-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210.7 bits (535), Expect = 7.6e-51
Identity = 104/115 (90.43%), Postives = 107/115 (93.04%), Query Frame = 0 

Query: 16  STLWKRQRSEFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT 75
           ST    +  +FNGEILA GNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT
Sbjct: 199 STAAANRFCKFNGEILAIGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT 258

Query: 76  CRGGKMAVADKIISNFGSENNSGKIKKQTETNFLFVAADLHILPYSHSLDCHFIC 131
           CRG KMAVADKIISNFGSENNSGKIKKQTETNFLFVAA+LHILPYSHSLDCHFIC
Sbjct: 259 CRGEKMAVADKIISNFGSENNSGKIKKQTETNFLFVAAELHILPYSHSLDCHFIC 313

[Close]
BLAST of Carg24669 vs. NCBI nr
Match: XP_022971167.1 (LOW QUALITY PROTEIN: B-box zinc finger protein 20-like [Cucurbita maxima])

HSP 1 Score: 188.7 bits (478), Expect = 3.1e-44
Identity = 96/116 (82.76%), Postives = 102/116 (87.93%), Query Frame = 0 

Query: 16  STLWKRQRSEFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT 75
           ST    +  +FNGEILA GNQNLERQQESLGIERFGNTLEFVGKFSQTG WNGVGISMKT
Sbjct: 199 STAAANRFCKFNGEILAIGNQNLERQQESLGIERFGNTLEFVGKFSQTGSWNGVGISMKT 258

Query: 76  CRGGKMAVADKIISNFGSENNSGKIKKQTETNFLFVAADLHILPY-SHSLDCHFIC 131
            R  KMAV DKII++FG+ENNSGKIK+QTETNFLFV ADLHILPY SHSLDCHFIC
Sbjct: 259 YRDEKMAVGDKIITSFGTENNSGKIKEQTETNFLFVVADLHILPYSSHSLDCHFIC 314

[Close]
BLAST of Carg24669 vs. ExPASy TrEMBL
Match: A0A6J1EIZ3 (B-box zinc finger protein 20-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433754 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.7e-51
Identity = 104/115 (90.43%), Postives = 107/115 (93.04%), Query Frame = 0 

Query: 16  STLWKRQRSEFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT 75
           ST    +  +FNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT
Sbjct: 199 STAAANRFCKFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT 258

Query: 76  CRGGKMAVADKIISNFGSENNSGKIKKQTETNFLFVAADLHILPYSHSLDCHFIC 131
           CRG KMAVADKIISNF SENNSGKIKKQTETNFLFVAADLH+LPYSHSLDCHFIC
Sbjct: 259 CRGEKMAVADKIISNFCSENNSGKIKKQTETNFLFVAADLHVLPYSHSLDCHFIC 313

[Close]
BLAST of Carg24669 vs. ExPASy TrEMBL
Match: A0A6J1I179 (LOW QUALITY PROTEIN: B-box zinc finger protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111469932 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.5e-44
Identity = 96/116 (82.76%), Postives = 102/116 (87.93%), Query Frame = 0 

Query: 16  STLWKRQRSEFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKT 75
           ST    +  +FNGEILA GNQNLERQQESLGIERFGNTLEFVGKFSQTG WNGVGISMKT
Sbjct: 199 STAAANRFCKFNGEILAIGNQNLERQQESLGIERFGNTLEFVGKFSQTGSWNGVGISMKT 258

Query: 76  CRGGKMAVADKIISNFGSENNSGKIKKQTETNFLFVAADLHILPY-SHSLDCHFIC 131
            R  KMAV DKII++FG+ENNSGKIK+QTETNFLFV ADLHILPY SHSLDCHFIC
Sbjct: 259 YRDEKMAVGDKIITSFGTENNSGKIKEQTETNFLFVVADLHILPYSSHSLDCHFIC 314

[Close]
BLAST of Carg24669 vs. ExPASy TrEMBL
Match: A0A6J1C1T9 (B-box zinc finger protein 20 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007609 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.2e-18
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 0 

Query: 25  EFNGEILATGNQNLERQQESLGIERFGNTLEFVGKFSQTGFWNGVGISMKTCRGGKMAVA 84
           +FN EI+A  NQNLE Q ESLG  RFGNTLEF GK SQT  WNGVGIS KTCR  KM V 
Sbjct: 208 KFNSEIVAFENQNLEDQHESLGTTRFGNTLEFSGKISQTRSWNGVGISRKTCRREKMGVG 267

Query: 85  DKIISNFGSENNSGKIK 102
           D+IIS+FGSE+ +  +K
Sbjct: 268 DQIISSFGSESETILVK 284

The following BLAST results are available for this feature:
BLAST of Carg24669 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022270.18.1e-69100.00hypothetical protein SDJN02_16001, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6588424.18.1e-53100.00B-box zinc finger protein 20, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022926713.17.6e-5190.43B-box zinc finger protein 20-like isoform X1 [Cucurbita moschata][more]
XP_023531436.17.6e-5190.43B-box zinc finger protein 20-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022971167.13.1e-4482.76LOW QUALITY PROTEIN: B-box zinc finger protein 20-like [Cucurbita maxima][more]
BLAST of Carg24669 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24669 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EIZ33.7e-5190.43B-box zinc finger protein 20-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1I1791.5e-4482.76LOW QUALITY PROTEIN: B-box zinc finger protein 20-like OS=Cucurbita maxima OX=36... [more]
A0A6J1C1T99.2e-1866.23B-box zinc finger protein 20 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111... [more]
BLAST of Carg24669 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24669-RACarg24669-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding