Carg24604 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24604
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr19: 2714205 .. 2715348 (+)
RNA-Seq ExpressionCarg24604
SyntenyCarg24604
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAGAAAAAAAGAAAAAAATATAGTATACACCTCATTCAAAGAATGTTATAGTGAGAGGATTTGAGTTTTTCTAGTGATCAGTTTTAAACCTGCGACAGGTTACTTGACATTCTTCTCCACAGGATTTTCTGAAGGAAGATACTGCTCTATAGACTTGTTATATTTGATCATCAATTTGGTGCATCGTTAATATGCTGTTCACCAATTTCGTAACTCTTTTGTATGGATCAGGATTGAATTAGAGGTATGCCCTAAAAGGATAAGCATGTTTTAACGCTCTTACCGTCTTGGAGGTTAGTTTGTTAATTTAATCTATGCTTACAACATAAACCGGTAGAGGAAAAAAACAATGGACCAAGGCATGATAAGTCACTTGTCATTTAATTGTTGATGAATTTTGGAGGATCCTTCAGGTGGTGGTGCATTTTACCCATCCATGGTTAGCTGTTTTCTTAGATATTTATTTTTCTCTCAGGCGACAACAGGAGACAGAGGCCAAATTACTTAAAGAAGAAACAGAAAAGAGAGTGGAAGAAGCGATTCGCAAGGAAGTCGAAGAGGGCCTCAACTCCGGGGATGTTAAACAGGAAATAAACAGGAAGTTGGAGGAGGGACGGAGAAGGCTTGCCGAAGAAGTGACAGCTCAACTCGAGAAGGAAAAGGAAGCTGCCCTTGTTGAGGCCAGACGGAAAGAGGTACTACTAATGTTGATTGATCTATTGCTTAATTTTTAAGACTGGTTTGGGTTGGGTTGGGTTGGGTTTGGACAGATGTTTGAGAAATGTGCTATTTGTGGGGTTTTTCTTTTTTTCGTTTCGTTTACAGGAACAAGCTCGAAAAGAAAAAGAAGACCGAGAAAGGATGGTCGAGGAGAGCCGGAGGAGAGTAGAGGAGGCTCAGAGAAGGGAGGCTTTAGAGAGACAAAAGAGAGAGGAGGAAAGATACAGGGAATTGGAAGAGCTACAAAGGCAAAAAGAAGAGGCTATTAAGAGGAAAAAACAGGATGAAGAGGAACAGCGTCTTAAACAGATGAAAGTATTGGGTAAAAACAAATCACGGCCGAAGCTATCATTTGCCATTGGCTCCAAATAAAAACATGTCAAGAAGAAACACAAGTAAATGCTTCAATTTGGGATGACATA

mRNA sequence

ATAAGAAAAAAAGAAAAAAATATAGTATACACCTCATTCAAAGAATGTTATAGTGAGAGGATTTGAGTTTTTCTAGTGATCAGTTTTAAACCTGCGACAGGTTACTTGACATTCTTCTCCACAGGATTTTCTGAAGGAAGATACTGCTCTATAGACTTGTTATATTTGATCATCAATTTGGTGCATCGTTAATATGCTGTTCACCAATTTCGTAACTCTTTTGTATGGATCAGGATTGAATTAGAGGTATGCCCTAAAAGGATAAGCATGTTTTAACGCTCTTACCGTCTTGGAGGTTAGTTTGTTAATTTAATCTATGCTTACAACATAAACCGGTAGAGGAAAAAAACAATGGACCAAGGCATGATAAGTCACTTGTCATTTAATTGTTGATGAATTTTGGAGGATCCTTCAGGTGGTGGTGCATTTTACCCATCCATGGTTAGCTGTTTTCTTAGATATTTATTTTTCTCTCAGGCGACAACAGGAGACAGAGGCCAAATTACTTAAAGAAGAAACAGAAAAGAGAGTGGAAGAAGCGATTCGCAAGGAAGTCGAAGAGGGCCTCAACTCCGGGGATGTTAAACAGGAAATAAACAGGAAGTTGGAGGAGGGACGGAGAAGGCTTGCCGAAGAAGTGACAGCTCAACTCGAGAAGGAAAAGGAAGCTGCCCTTGTTGAGGCCAGACGGAAAGAGGAACAAGCTCGAAAAGAAAAAGAAGACCGAGAAAGGATGGTCGAGGAGAGCCGGAGGAGAGTAGAGGAGGCTCAGAGAAGGGAGGCTTTAGAGAGACAAAAGAGAGAGGAGGAAAGATACAGGGAATTGGAAGAGCTACAAAGGCAAAAAGAAGAGGCTATTAAGAGGAAAAAACAGGATGAAGAGGAACAGCGTCTTAAACAGATGAAAGTATTGGGTAAAAACAAATCACGGCCGAAGCTATCATTTGCCATTGGCTCCAAATAAAAACATGTCAAGAAGAAACACAAGTAAATGCTTCAATTTGGGATGACATA

Coding sequence (CDS)

ATGGTCGAGGAGAGCCGGAGGAGAGTAGAGGAGGCTCAGAGAAGGGAGGCTTTAGAGAGACAAAAGAGAGAGGAGGAAAGATACAGGGAATTGGAAGAGCTACAAAGGCAAAAAGAAGAGGCTATTAAGAGGAAAAAACAGGATGAAGAGGAACAGCGTCTTAAACAGATGAAAGTATTGGGTAAAAACAAATCACGGCCGAAGCTATCATTTGCCATTGGCTCCAAATAA

Protein sequence

MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVLGKNKSRPKLSFAIGSK
Homology
[Close]
BLAST of Carg24604 vs. NCBI nr
Match: XP_022963577.1 (uncharacterized protein At1g10890-like isoform X1 [Cucurbita moschata] >XP_022963578.1 uncharacterized protein At1g10890-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 120.6 bits (301), Expect = 6.1e-24
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1   MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 60
           MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL
Sbjct: 203 MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 262

Query: 61  GKNKSRPKLSFAIGSK 77
           GKNKSRPKLSFAIGSK
Sbjct: 263 GKNKSRPKLSFAIGSK 278

[Close]
BLAST of Carg24604 vs. NCBI nr
Match: KAG6571723.1 (Transmembrane emp24 domain-containing protein p24delta3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 6.1e-24
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1   MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 60
           MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL
Sbjct: 447 MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 506

Query: 61  GKNKSRPKLSFAIGSK 77
           GKNKSRPKLSFAIGSK
Sbjct: 507 GKNKSRPKLSFAIGSK 522

[Close]
BLAST of Carg24604 vs. NCBI nr
Match: XP_022963579.1 (uncharacterized protein At1g10890-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 120.6 bits (301), Expect = 6.1e-24
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1   MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 60
           MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL
Sbjct: 161 MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 220

Query: 61  GKNKSRPKLSFAIGSK 77
           GKNKSRPKLSFAIGSK
Sbjct: 221 GKNKSRPKLSFAIGSK 236

[Close]
BLAST of Carg24604 vs. NCBI nr
Match: XP_023553935.1 (uncharacterized protein At1g10890-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023553937.1 uncharacterized protein At1g10890-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.6 bits (301), Expect = 6.1e-24
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1   MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 60
           MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL
Sbjct: 162 MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 221

Query: 61  GKNKSRPKLSFAIGSK 77
           GKNKSRPKLSFAIGSK
Sbjct: 222 GKNKSRPKLSFAIGSK 237

[Close]
BLAST of Carg24604 vs. NCBI nr
Match: XP_023553933.1 (uncharacterized protein At1g10890-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023553934.1 uncharacterized protein At1g10890-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.6 bits (301), Expect = 6.1e-24
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1   MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 60
           MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL
Sbjct: 204 MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 263

Query: 61  GKNKSRPKLSFAIGSK 77
           GKNKSRPKLSFAIGSK
Sbjct: 264 GKNKSRPKLSFAIGSK 279

[Close]
BLAST of Carg24604 vs. ExPASy Swiss-Prot
Match: P0CB26 (Uncharacterized protein At1g10890 OS=Arabidopsis thaliana OX=3702 GN=At1g10890 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-19
Identity = 59/76 (77.63%), Postives = 72/76 (94.74%), Query Frame = 0 

Query: 1   MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 60
           + EE+ +RVEEAQR+EA+ERQ++EEERYRELEELQRQKEEA++RKK +EEE+RLKQMK+L
Sbjct: 205 IAEENLKRVEEAQRKEAMERQRKEEERYRELEELQRQKEEAMRRKKAEEEEERLKQMKLL 264

Query: 61  GKNKSRPKLSFAIGSK 77
           GKNKSRPKLSFA+ SK
Sbjct: 265 GKNKSRPKLSFALSSK 280

[Close]
BLAST of Carg24604 vs. ExPASy TrEMBL
Match: A0A6J1HI71 (uncharacterized protein At1g10890-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463875 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1   MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 60
           MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL
Sbjct: 203 MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 262

Query: 61  GKNKSRPKLSFAIGSK 77
           GKNKSRPKLSFAIGSK
Sbjct: 263 GKNKSRPKLSFAIGSK 278

[Close]
BLAST of Carg24604 vs. ExPASy TrEMBL
Match: A0A6J1HKL0 (uncharacterized protein At1g10890-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463875 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1   MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 60
           MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL
Sbjct: 161 MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 220

Query: 61  GKNKSRPKLSFAIGSK 77
           GKNKSRPKLSFAIGSK
Sbjct: 221 GKNKSRPKLSFAIGSK 236

[Close]
BLAST of Carg24604 vs. ExPASy TrEMBL
Match: A0A6J1HRW3 (uncharacterized protein At1g10890-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466935 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.5e-24
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1   MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 60
           MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMK+L
Sbjct: 203 MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKLL 262

Query: 61  GKNKSRPKLSFAIGSK 77
           GKNKSRPKLSFAIGSK
Sbjct: 263 GKNKSRPKLSFAIGSK 278

[Close]
BLAST of Carg24604 vs. ExPASy TrEMBL
Match: A0A6J1HQQ1 (uncharacterized protein At1g10890-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466935 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.5e-24
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1   MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 60
           MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMK+L
Sbjct: 161 MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKLL 220

Query: 61  GKNKSRPKLSFAIGSK 77
           GKNKSRPKLSFAIGSK
Sbjct: 221 GKNKSRPKLSFAIGSK 236

[Close]
BLAST of Carg24604 vs. ExPASy TrEMBL
Match: A0A5A7UT49 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00230 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-22
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0 

Query: 1   MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 60
           MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQ+EEEQR+ QMK+L
Sbjct: 201 MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQEEEEQRVNQMKLL 260

Query: 61  GKNKSRPKLSFAIGSK 77
           GKNKSRPKLSFAIGSK
Sbjct: 261 GKNKSRPKLSFAIGSK 276

[Close]
BLAST of Carg24604 vs. TAIR 10
Match: AT1G10890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: petal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1); Has 11769 Blast hits to 8435 proteins in 698 species: Archae - 22; Bacteria - 971; Metazoa - 5937; Fungi - 1065; Plants - 592; Viruses - 101; Other Eukaryotes - 3081 (source: NCBI BLink). )

HSP 1 Score: 96.7 bits (239), Expect = 8.7e-21
Identity = 59/76 (77.63%), Postives = 72/76 (94.74%), Query Frame = 0 

Query: 1   MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 60
           + EE+ +RVEEAQR+EA+ERQ++EEERYRELEELQRQKEEA++RKK +EEE+RLKQMK+L
Sbjct: 213 IAEENLKRVEEAQRKEAMERQRKEEERYRELEELQRQKEEAMRRKKAEEEEERLKQMKLL 272

Query: 61  GKNKSRPKLSFAIGSK 77
           GKNKSRPKLSFA+ SK
Sbjct: 273 GKNKSRPKLSFALSSK 288

[Close]
BLAST of Carg24604 vs. TAIR 10
Match: AT5G13340.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-11
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 0 

Query: 1   MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVL 60
           M+EE+ RRVEE+QRREA+E Q++EEERYRELE LQRQKEEA +RKK +EEE+     K+ 
Sbjct: 168 MLEENSRRVEESQRREAMELQRKEEERYRELELLQRQKEEAARRKKLEEEEEIRNSSKLS 227

Query: 61  GKNKSRPKLSFAIG 75
             N+SR KL F +G
Sbjct: 228 NGNRSRSKLHFGMG 241

The following BLAST results are available for this feature:
BLAST of Carg24604 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022963577.16.1e-24100.00uncharacterized protein At1g10890-like isoform X1 [Cucurbita moschata] >XP_02296... [more]
KAG6571723.16.1e-24100.00Transmembrane emp24 domain-containing protein p24delta3, partial [Cucurbita argy... [more]
XP_022963579.16.1e-24100.00uncharacterized protein At1g10890-like isoform X2 [Cucurbita moschata][more]
XP_023553935.16.1e-24100.00uncharacterized protein At1g10890-like isoform X2 [Cucurbita pepo subsp. pepo] >... [more]
XP_023553933.16.1e-24100.00uncharacterized protein At1g10890-like isoform X1 [Cucurbita pepo subsp. pepo] >... [more]
BLAST of Carg24604 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0CB261.2e-1977.63Uncharacterized protein At1g10890 OS=Arabidopsis thaliana OX=3702 GN=At1g10890 P... [more]
BLAST of Carg24604 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HI712.9e-24100.00uncharacterized protein At1g10890-like isoform X1 OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1HKL02.9e-24100.00uncharacterized protein At1g10890-like isoform X2 OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1HRW36.5e-2498.68uncharacterized protein At1g10890-like isoform X1 OS=Cucurbita maxima OX=3661 GN... [more]
A0A6J1HQQ16.5e-2498.68uncharacterized protein At1g10890-like isoform X2 OS=Cucurbita maxima OX=3661 GN... [more]
A0A5A7UT491.6e-2294.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Carg24604 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G10890.18.7e-2177.63unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G13340.12.2e-1162.16unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..76
IPR033371Arginine and glutamate-rich protein 1PFAMPF15346ARGLUcoord: 1..72
e-value: 1.8E-15
score: 57.1
IPR033371Arginine and glutamate-rich protein 1PANTHERPTHR31711ARGININE AND GLUTAMATE-RICH PROTEIN 1coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24604-RACarg24604-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005654 nucleoplasm