Carg24598 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24598
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr19: 2559613 .. 2559871 (+)
RNA-Seq Expression	Carg24598
Synteny	Carg24598

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTGTAGACATGAAAGCGTAAGAACTCAACAGGATCCCTTCGAATCAGAAAAAAAAGAGGGGTAGGTCTCGTTGAGCGTTGCTCTCAATTTCTTTAGTGCATACGAAAGAACTGTAAATTAATATATATACTAATAGGGTTGTTTCTAATGCAAGTTCCCTCTTGGAAAGAGAAAGAAATCAGCTTCTTTCTTGGGTGCTGGTAGTGCTTTCTTTGCTTGACAAGCTGCAGAAAGATTGTGTTGATTTGTTTTGA

mRNA sequence

ATGAACTGTAGACATGAAAGCGTAAGAACTCAACAGGATCCCTTCGAATCAGAAAAAAAAGAGGGGGTTGTTTCTAATGCAAGTTCCCTCTTGGAAAGAGAAAGAAATCAGCTTCTTTCTTGGGTGCTGGTAGTGCTTTCTTTGCTTGACAAGCTGCAGAAAGATTGTGTTGATTTGTTTTGA

Coding sequence (CDS)

ATGAACTGTAGACATGAAAGCGTAAGAACTCAACAGGATCCCTTCGAATCAGAAAAAAAAGAGGGGGTTGTTTCTAATGCAAGTTCCCTCTTGGAAAGAGAAAGAAATCAGCTTCTTTCTTGGGTGCTGGTAGTGCTTTCTTTGCTTGACAAGCTGCAGAAAGATTGTGTTGATTTGTTTTGA

Protein sequence

MNCRHESVRTQQDPFESEKKEGVVSNASSLLERERNQLLSWVLVVLSLLDKLQKDCVDLF

Homology

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BLAST of Carg24598 vs. NCBI nr
Match: KAG7011442.1 (hypothetical protein SDJN02_26348, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MNCRHESVRTQQDPFESEKKEGVVSNASSLLERERNQLLSWVLVVLSLLDKLQKDCVDLF 60
          MNCRHESVRTQQDPFESEKKEGVVSNASSLLERERNQLLSWVLVVLSLLDKLQKDCVDLF
Sbjct: 1  MNCRHESVRTQQDPFESEKKEGVVSNASSLLERERNQLLSWVLVVLSLLDKLQKDCVDLF 60

The following BLAST results are available for this feature:

BLAST of Carg24598 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011442.1	1.8e-23	100.00	hypothetical protein SDJN02_26348, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg24598 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24598 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24598 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24598-RA	Carg24598-RA	mRNA