Carg24546 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24546
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 103972 .. 104816 (-)
RNA-Seq ExpressionCarg24546
SyntenyCarg24546
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTTACGACAGAGGAGTGGACAAGTTCACCGACCAGGACCAGCAGGAAAAGAAGGAACACGTGAATTAAGATGGGGTAATCAAAGTTTTAAGTTTTAACTTAACAATACTATTTCAACGAATTGGTGCTAAATTCAAAGACACGCGAGGAAGGAAGAATTATTGTTTTTGTTAGATTTCAACGAATTTGGCTAATTAATTTGTTTTCTCTGTTTTCAATAACATCGAAATTGGACGATGAGCAGTGGTTGGCTTACTGGATCATCTATTCCTTTCTCACTCTCGTGGAGATGGTTGTCCTGCAACCTTTGTTAGAGTGGTGAGTGGAAATTCTAGATTCCCCCCTTGTTGTTCTCAATAACATGGTTTTAATTCGTGGCTGAAAGAACAGTGACAGCTTCATTATTTGCGTTGCAGGATAGCAGTTTGGTATTGGGTGAAATTAGTATTTGGGGCATGGCTGGTTCTGCGACAGGTCCAGCTTTCTTGTATGAAGGATTCGTGAGGCTGCAGATTAAGAAACATGGTTTGGGAAGCAATTCTCCTGATGCGTTGATTCACTTACTGGTACACATGTCTCTTGTTTTCGTATGGTGTGCGAAAATAGTTGGTATTGGCTTTGTATATAGACAGTTTAAAGAATTTCAATTCATCCAAAACTGTGTATAAGTTGCACGTCTTTTCATTCTAGTATTACTGCGATGTAAGAGAGTTAATATGACCCACATTTCTCTTACTTTCTGTACCTATTACCCTCTCTTCTTCACTCTTACCCTTTGTCATTGTCAATCCTCAATGTGGTAAGGGCGACCACATAAACATATAAATGATTATTTTTTAGT

mRNA sequence

ATGGTGTTACGACAGAGGAGTGGACAAGTTCACCGACCAGGACCAGCAGGAAAAGAAGGAACACGTGAATTAAGATGGGTGGTTGGCTTACTGGATCATCTATTCCTTTCTCACTCTCGTGGAGATGGTTGTCCTGCAACCTTTGTTAGAGTGGATAGCAGTTTGGTATTGGGTGAAATTAGTATTTGGGGCATGGCTGGTTCTGCGACAGGTCCAGCTTTCTTGTATGAAGGATTCGTGAGGCTGCAGATTAAGAAACATGGTTTGGGAAGCAATTCTCCTGATGCGTTGATTCACTTACTGGTACACATGTCTCTTGTTTTCGTATGGTGTGCGAAAATAGTTGGTATTGGCTTTGTATATAGACAGTTTAAAGAATTTCAATTCATCCAAAACTGTGTATAAGTTGCACGTCTTTTCATTCTAGTATTACTGCGATGTAAGAGAGTTAATATGACCCACATTTCTCTTACTTTCTGTACCTATTACCCTCTCTTCTTCACTCTTACCCTTTGTCATTGTCAATCCTCAATGTGGTAAGGGCGACCACATAAACATATAAATGATTATTTTTTAGT

Coding sequence (CDS)

ATGGTGTTACGACAGAGGAGTGGACAAGTTCACCGACCAGGACCAGCAGGAAAAGAAGGAACACGTGAATTAAGATGGGTGGTTGGCTTACTGGATCATCTATTCCTTTCTCACTCTCGTGGAGATGGTTGTCCTGCAACCTTTGTTAGAGTGGATAGCAGTTTGGTATTGGGTGAAATTAGTATTTGGGGCATGGCTGGTTCTGCGACAGGTCCAGCTTTCTTGTATGAAGGATTCGTGAGGCTGCAGATTAAGAAACATGGTTTGGGAAGCAATTCTCCTGATGCGTTGATTCACTTACTGGTACACATGTCTCTTGTTTTCGTATGGTGTGCGAAAATAGTTGGTATTGGCTTTGTATATAGACAGTTTAAAGAATTTCAATTCATCCAAAACTGTGTATAA

Protein sequence

MVLRQRSGQVHRPGPAGKEGTRELRWVVGLLDHLFLSHSRGDGCPATFVRVDSSLVLGEISIWGMAGSATGPAFLYEGFVRLQIKKHGLGSNSPDALIHLLVHMSLVFVWCAKIVGIGFVYRQFKEFQFIQNCV
Homology
[Close]
BLAST of Carg24546 vs. NCBI nr
Match: KAG7021386.1 (hypothetical protein SDJN02_15111, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283.1 bits (723), Expect = 1.2e-72
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MVLRQRSGQVHRPGPAGKEGTRELRWVVGLLDHLFLSHSRGDGCPATFVRVDSSLVLGEI 60
           MVLRQRSGQVHRPGPAGKEGTRELRWVVGLLDHLFLSHSRGDGCPATFVRVDSSLVLGEI
Sbjct: 1   MVLRQRSGQVHRPGPAGKEGTRELRWVVGLLDHLFLSHSRGDGCPATFVRVDSSLVLGEI 60

Query: 61  SIWGMAGSATGPAFLYEGFVRLQIKKHGLGSNSPDALIHLLVHMSLVFVWCAKIVGIGFV 120
           SIWGMAGSATGPAFLYEGFVRLQIKKHGLGSNSPDALIHLLVHMSLVFVWCAKIVGIGFV
Sbjct: 61  SIWGMAGSATGPAFLYEGFVRLQIKKHGLGSNSPDALIHLLVHMSLVFVWCAKIVGIGFV 120

Query: 121 YRQFKEFQFIQNCV 135
           YRQFKEFQFIQNCV
Sbjct: 121 YRQFKEFQFIQNCV 134

[Close]
BLAST of Carg24546 vs. NCBI nr
Match: KAG6587400.1 (Protein DEK, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246.1 bits (627), Expect = 1.7e-61
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 0 

Query: 1   MVLRQRSGQVHRPGPAGKEGTRELRWVVGLLDHLFLSHSRGDGCPATFVRVDSSLVLGEI 60
           MVLRQRSGQVHRPGPAGKEGTRELRWVVGLLDHLFLSHSRGDGCPATFVRVDSSLVLGEI
Sbjct: 1   MVLRQRSGQVHRPGPAGKEGTRELRWVVGLLDHLFLSHSRGDGCPATFVRVDSSLVLGEI 60

Query: 61  SIWGMAGSATGPAFLYEGFVRLQIKKHGLGSNSPDALIHLLVHMSLVFVWCAKIVGIGF 120
           SIWGMAGSATGPAFLYEGFVRLQIKKHGLGSNSPDALIHLLVHMSLVFVWCAKIVG  F
Sbjct: 61  SIWGMAGSATGPAFLYEGFVRLQIKKHGLGSNSPDALIHLLVHMSLVFVWCAKIVGFLF 119

The following BLAST results are available for this feature:
BLAST of Carg24546 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021386.11.2e-72100.00hypothetical protein SDJN02_15111, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6587400.11.7e-6198.32Protein DEK, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Carg24546 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24546 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24546 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24546-RACarg24546-RAmRNA