Carg24539 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24539
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nuclear transcription factor Y subunit C
Location	Carg_Chr11: 135980 .. 136654 (+)
RNA-Seq Expression	Carg24539
Synteny	Carg24539

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCCTCCTCCTCCTCAGGCACCCGTCCCGGCCCCTCACTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTTTGGCTCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAAGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTGGAACTCACTATTAGGTCATGGCTTCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCGGCGGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAAATCAAGGACGAAGCTGGATTGGGAGGCATGGTCGGAGCCACTGCTAGTGGAGTGCCCTACTATTACCCCCCTATGGGTCAACCGGCAGGGGCTCCCGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCATCGGAGTTTACGCTCAGCCGCCGTCACAGGCCTGGCAGTCGGCGTGGCAGCCCTCGGCGGAGGACGGTTCTTACGCCAGTGGAGGCAACAGCGGGCAGGGCAATCTTGATGGTCAGAGGTAG

mRNA sequence

ATGGAGAACAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCCTCCTCCTCCTCAGGCACCCGTCCCGGCCCCTCACTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTTTGGCTCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAAGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTGGAACTCACTATTAGGTCATGGCTTCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCGGCGGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAAATCAAGGACGAAGCTGGATTGGGAGGCATGGTCGGAGCCACTGCTAGTGGAGTGCCCTACTATTACCCCCCTATGGGTCAACCGGCAGGGGCTCCCGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCATCGGAGTTTACGCTCAGCCGCCGTCACAGGCCTGGCAGTCGGCGTGGCAGCCCTCGGCGGAGGACGGTTCTTACGCCAGTGGAGGCAACAGCGGGCAGGGCAATCTTGATGGTCAGAGGTAG

Coding sequence (CDS)

ATGGAGAACAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCCTCCTCCTCCTCAGGCACCCGTCCCGGCCCCTCACTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTTTGGCTCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAAGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTGGAACTCACTATTAGGTCATGGCTTCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCGGCGGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAAATCAAGGACGAAGCTGGATTGGGAGGCATGGTCGGAGCCACTGCTAGTGGAGTGCCCTACTATTACCCCCCTATGGGTCAACCGGCAGGGGCTCCCGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCATCGGAGTTTACGCTCAGCCGCCGTCACAGGCCTGGCAGTCGGCGTGGCAGCCCTCGGCGGAGGACGGTTCTTACGCCAGTGGAGGCAACAGCGGGCAGGGCAATCTTGATGGTCAGAGGTAG

Protein sequence

MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQR

Homology

[Close]

BLAST of Carg24539 vs. NCBI nr
Match: XP_022930021.1 (nuclear transcription factor Y subunit C-1-like isoform X2 [Cucurbita moschata] >XP_022930030.1 nuclear transcription factor Y subunit C-1-like isoform X3 [Cucurbita moschata] >KAG7021393.1 Nuclear transcription factor Y subunit C-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 443.0 bits (1138), Expect = 1.6e-120
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60
           MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ
Sbjct: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60

Query: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120
           LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA
Sbjct: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120

Query: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180
           AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP
Sbjct: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180

Query: 181 AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQR 225
           AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQR
Sbjct: 181 AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQR 224

[Close]

BLAST of Carg24539 vs. NCBI nr
Match: XP_023007663.1 (nuclear transcription factor Y subunit C-1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 441.4 bits (1134), Expect = 4.6e-120
Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60
           MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ
Sbjct: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60

Query: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120
           LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA
Sbjct: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120

Query: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180
           AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP
Sbjct: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180

Query: 181 AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQR 225
           AMDPIGVYAQPPSQAWQS WQPSAEDGSYASGGNSGQGNLDGQR
Sbjct: 181 AMDPIGVYAQPPSQAWQSTWQPSAEDGSYASGGNSGQGNLDGQR 224

[Close]

BLAST of Carg24539 vs. NCBI nr
Match: XP_022930013.1 (nuclear transcription factor Y subunit C-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 441.0 bits (1133), Expect = 6.0e-120
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60
           MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ
Sbjct: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60

Query: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120
           LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA
Sbjct: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120

Query: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180
           AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP
Sbjct: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180

Query: 181 AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQ 224
           AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQ
Sbjct: 181 AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQ 223

[Close]

BLAST of Carg24539 vs. NCBI nr
Match: XP_023007652.1 (nuclear transcription factor Y subunit C-1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 439.5 bits (1129), Expect = 1.7e-119
Identity = 222/223 (99.55%), Postives = 222/223 (99.55%), Query Frame = 0


Query: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60
           MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ
Sbjct: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60

Query: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120
           LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA
Sbjct: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120

Query: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180
           AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP
Sbjct: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180

Query: 181 AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQ 224
           AMDPIGVYAQPPSQAWQS WQPSAEDGSYASGGNSGQGNLDGQ
Sbjct: 181 AMDPIGVYAQPPSQAWQSTWQPSAEDGSYASGGNSGQGNLDGQ 223

[Close]

BLAST of Carg24539 vs. NCBI nr
Match: KAG6587408.1 (Nuclear transcription factor Y subunit C-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 439.1 bits (1128), Expect = 2.3e-119
Identity = 222/223 (99.55%), Postives = 222/223 (99.55%), Query Frame = 0


Query: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60
           MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ
Sbjct: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60

Query: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120
           LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA
Sbjct: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120

Query: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180
           AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP
Sbjct: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180

Query: 181 AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQ 224
           AMDPIGVYAQPPSQAWQSAW PSAEDGSYASGGNSGQGNLDGQ
Sbjct: 181 AMDPIGVYAQPPSQAWQSAWHPSAEDGSYASGGNSGQGNLDGQ 223

[Close]

BLAST of Carg24539 vs. ExPASy Swiss-Prot
Match: Q9SMP0 (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.4e-92
Identity = 189/231 (81.82%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 3   NNNQAQSSPYPPPPPPPQAPVPA----PHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKN 62
           NN Q   S    PPPPP   + A      +HHLLQQQQQQLQ+FW++QRQEIEQVNDFKN
Sbjct: 4   NNQQPPPSAAGIPPPPPGTTISAAGGGASYHHLLQQQQQQLQLFWTYQRQEIEQVNDFKN 63

Query: 63  HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKND 122
           HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKND
Sbjct: 64  HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKND 123

Query: 123 IAAAITRTDIFDFLVDIVPRDEIKDEAGL--GGMVGA-TASGVPYYYPPMGQPAGAPGGM 182
           IAAAITRTDIFDFLVDIVPRDEIKDEA +  GGMV A TASGVPYYYPPMGQPAG PGGM
Sbjct: 124 IAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQPAG-PGGM 183

Query: 183 MIGRPAMDPIGVYAQPPSQAWQSAWQPS---AEDGSYASGGNSGQGNLDGQ 224
           MIGRPAMDP GVY QPPSQAWQS WQ S    +D SY SGG+SGQGNLDGQ
Sbjct: 184 MIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGGSSGQGNLDGQ 233

[Close]

BLAST of Carg24539 vs. ExPASy Swiss-Prot
Match: Q9FMV5 (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NFYC4 PE=1 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.9e-89
Identity = 187/245 (76.33%), Postives = 194/245 (79.18%), Query Frame = 0


Query: 3   NNNQAQSSP---YPPP-------PPPPQAPVP-----APHFHHLLQQQQQQLQMFWSFQR 62
           NNN  Q  P   YPP        PPPP             +HHLLQQQQQQLQMFW++QR
Sbjct: 6   NNNNQQPPPTSVYPPGSAVTTVIPPPPSGSASIVTGGGATYHHLLQQQQQQLQMFWTYQR 65

Query: 63  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 122
           QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE
Sbjct: 66  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 125

Query: 123 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE------AGLGGMVGATASGVPYY 182
           ENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E       G GGMV   ASGVPYY
Sbjct: 126 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYY 185

Query: 183 YPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSAWQPSA---EDGSYASGGNSGQG 224
           YPPMGQPA  PGGMMIGRPAMDP GVYAQPPSQAWQS WQ SA   +D SY SGG+SG G
Sbjct: 186 YPPMGQPA-VPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGHG 245

[Close]

BLAST of Carg24539 vs. ExPASy Swiss-Prot
Match: A6BLW4 (Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC2 PE=1 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.3e-58
Identity = 136/223 (60.99%), Postives = 151/223 (67.71%), Query Frame = 0


Query: 13  PPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQ--VNDFKNHQLPLARIKKIM 72
           P P  P     PA   HHLLQQQQ QLQ FW++QRQE E+   +DFKNHQLPLARIKKIM
Sbjct: 20  PVPGVPGAGGPPAVPHHHLLQQQQAQLQAFWAYQRQEAERASASDFKNHQLPLARIKKIM 79

Query: 73  KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFD 132
           KADEDVRMISAEAP+LFAKACELFILELTIRSWLHAEENKRRTLQ+ND+AAAI RTD+FD
Sbjct: 80  KADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDVFD 139

Query: 133 FLVDIVPRDEIKDEAG------LGGMVGAT-----ASGVPYYYPPMGQPAGAPGGMMIGR 192
           FLVDIVPR+E K+E G       GG  GA      A+G+PYYYPPMGQPA       +  
Sbjct: 140 FLVDIVPREEAKEEPGSALGFAAGGPAGAVGAAGPAAGLPYYYPPMGQPAPMMPAWHV-- 199

Query: 193 PAMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDG 223
           PA DP          AWQ    P  + G+  S    GQ    G
Sbjct: 200 PAWDP----------AWQQGAAPDVDQGAAGSFSEEGQQGFAG 230

[Close]

BLAST of Carg24539 vs. ExPASy Swiss-Prot
Match: Q9ZVL3 (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.2e-52
Identity = 122/192 (63.54%), Postives = 138/192 (71.88%), Query Frame = 0


Query: 18  PPQAPVPAPHFHHLLQQQQ--QQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADED 77
           P  +  PA H  H  QQQQ  QQLQ FW  Q +EIE+  DFKNH LPLARIKKIMKADED
Sbjct: 26  PTGSDHPAYHQIHQQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADED 85

Query: 78  VRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 137
           VRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDI
Sbjct: 86  VRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDI 145

Query: 138 VPRDEIKDEA-GLGGMVGATASGVPY-YYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPS 197
           VPR++++DE  G  G   ATA+G PY Y PP   P G P GM++G P   P   Y   P 
Sbjct: 146 VPREDLRDEVLGGVGAEAATAAGYPYGYLPPGTAPIGNP-GMVMGNPGAYPPNPYMGQP- 205

Query: 198 QAWQSAWQPSAE 206
             WQ   QP  E
Sbjct: 206 -MWQ---QPGPE 211

[Close]

BLAST of Carg24539 vs. ExPASy Swiss-Prot
Match: Q8L4B2 (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana OX=3702 GN=NFYC9 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.1e-51
Identity = 117/189 (61.90%), Postives = 134/189 (70.90%), Query Frame = 0


Query: 28  FHHLLQQQQ-----QQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAE 87
           FH + QQQQ     QQLQ FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISAE
Sbjct: 43  FHQIHQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAE 102

Query: 88  APILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 147
           AP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++
Sbjct: 103 APVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLR 162

Query: 148 DEA----GLGGMVGATASGVPYYYPPMG-QPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQ 207
           DE       G +  A A+G PY Y P G  P G P GM++G P     G Y   P    Q
Sbjct: 163 DEVLGSIPRGTVPEAAAAGYPYGYLPAGTAPIGNP-GMVMGNPG----GAYPPNPYMG-Q 222

[Close]

BLAST of Carg24539 vs. ExPASy TrEMBL
Match: A0A6J1EVW5 (nuclear transcription factor Y subunit C-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436453 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 7.6e-121
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60
           MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ
Sbjct: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60

Query: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120
           LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA
Sbjct: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120

Query: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180
           AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP
Sbjct: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180

Query: 181 AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQR 225
           AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQR
Sbjct: 181 AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQR 224

[Close]

BLAST of Carg24539 vs. ExPASy TrEMBL
Match: A0A6J1L8A4 (nuclear transcription factor Y subunit C-1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111500215 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 2.2e-120
Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60
           MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ
Sbjct: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60

Query: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120
           LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA
Sbjct: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120

Query: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180
           AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP
Sbjct: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180

Query: 181 AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQR 225
           AMDPIGVYAQPPSQAWQS WQPSAEDGSYASGGNSGQGNLDGQR
Sbjct: 181 AMDPIGVYAQPPSQAWQSTWQPSAEDGSYASGGNSGQGNLDGQR 224

[Close]

BLAST of Carg24539 vs. ExPASy TrEMBL
Match: A0A6J1ETU4 (nuclear transcription factor Y subunit C-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436453 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 2.9e-120
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60
           MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ
Sbjct: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60

Query: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120
           LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA
Sbjct: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120

Query: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180
           AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP
Sbjct: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180

Query: 181 AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQ 224
           AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQ
Sbjct: 181 AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQ 223

[Close]

BLAST of Carg24539 vs. ExPASy TrEMBL
Match: A0A6J1KZA6 (nuclear transcription factor Y subunit C-1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111500215 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 8.4e-120
Identity = 222/223 (99.55%), Postives = 222/223 (99.55%), Query Frame = 0


Query: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60
           MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ
Sbjct: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60

Query: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120
           LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA
Sbjct: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120

Query: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180
           AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP
Sbjct: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180

Query: 181 AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQ 224
           AMDPIGVYAQPPSQAWQS WQPSAEDGSYASGGNSGQGNLDGQ
Sbjct: 181 AMDPIGVYAQPPSQAWQSTWQPSAEDGSYASGGNSGQGNLDGQ 223

[Close]

BLAST of Carg24539 vs. ExPASy TrEMBL
Match: A0A6J1C352 (nuclear transcription factor Y subunit C-1-like OS=Momordica charantia OX=3673 GN=LOC111007012 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.1e-111
Identity = 212/223 (95.07%), Postives = 215/223 (96.41%), Query Frame = 0


Query: 1   MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60
           ME+NNQAQSSPY    PPPQAPVPAP FHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ
Sbjct: 1   MESNNQAQSSPY----PPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQ 60

Query: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120
           LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA
Sbjct: 61  LPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 120

Query: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180
           AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP
Sbjct: 121 AAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRP 180

Query: 181 AMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQ 224
           AMDP GVYAQPPSQAWQS WQ +AEDGSYASGG+SGQGNLDGQ
Sbjct: 181 AMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQ 219

[Close]

BLAST of Carg24539 vs. TAIR 10
Match: AT3G48590.1 (nuclear factor Y, subunit C1 )

HSP 1 Score: 340.5 bits (872), Expect = 1.0e-93
Identity = 189/231 (81.82%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 3   NNNQAQSSPYPPPPPPPQAPVPA----PHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKN 62
           NN Q   S    PPPPP   + A      +HHLLQQQQQQLQ+FW++QRQEIEQVNDFKN
Sbjct: 4   NNQQPPPSAAGIPPPPPGTTISAAGGGASYHHLLQQQQQQLQLFWTYQRQEIEQVNDFKN 63

Query: 63  HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKND 122
           HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKND
Sbjct: 64  HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKND 123

Query: 123 IAAAITRTDIFDFLVDIVPRDEIKDEAGL--GGMVGA-TASGVPYYYPPMGQPAGAPGGM 182
           IAAAITRTDIFDFLVDIVPRDEIKDEA +  GGMV A TASGVPYYYPPMGQPAG PGGM
Sbjct: 124 IAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQPAG-PGGM 183

Query: 183 MIGRPAMDPIGVYAQPPSQAWQSAWQPS---AEDGSYASGGNSGQGNLDGQ 224
           MIGRPAMDP GVY QPPSQAWQS WQ S    +D SY SGG+SGQGNLDGQ
Sbjct: 184 MIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGGSSGQGNLDGQ 233

[Close]

BLAST of Carg24539 vs. TAIR 10
Match: AT5G63470.1 (nuclear factor Y, subunit C4 )

HSP 1 Score: 330.1 bits (845), Expect = 1.4e-90
Identity = 187/245 (76.33%), Postives = 194/245 (79.18%), Query Frame = 0


Query: 3   NNNQAQSSP---YPPP-------PPPPQAPVP-----APHFHHLLQQQQQQLQMFWSFQR 62
           NNN  Q  P   YPP        PPPP             +HHLLQQQQQQLQMFW++QR
Sbjct: 6   NNNNQQPPPTSVYPPGSAVTTVIPPPPSGSASIVTGGGATYHHLLQQQQQQLQMFWTYQR 65

Query: 63  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 122
           QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE
Sbjct: 66  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 125

Query: 123 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE------AGLGGMVGATASGVPYY 182
           ENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E       G GGMV   ASGVPYY
Sbjct: 126 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYY 185

Query: 183 YPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSAWQPSA---EDGSYASGGNSGQG 224
           YPPMGQPA  PGGMMIGRPAMDP GVYAQPPSQAWQS WQ SA   +D SY SGG+SG G
Sbjct: 186 YPPMGQPA-VPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGHG 245

[Close]

BLAST of Carg24539 vs. TAIR 10
Match: AT5G63470.2 (nuclear factor Y, subunit C4 )

HSP 1 Score: 330.1 bits (845), Expect = 1.4e-90
Identity = 187/245 (76.33%), Postives = 194/245 (79.18%), Query Frame = 0


Query: 3   NNNQAQSSP---YPPP-------PPPPQAPVP-----APHFHHLLQQQQQQLQMFWSFQR 62
           NNN  Q  P   YPP        PPPP             +HHLLQQQQQQLQMFW++QR
Sbjct: 6   NNNNQQPPPTSVYPPGSAVTTVIPPPPSGSASIVTGGGATYHHLLQQQQQQLQMFWTYQR 65

Query: 63  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 122
           QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE
Sbjct: 66  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 125

Query: 123 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE------AGLGGMVGATASGVPYY 182
           ENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E       G GGMV   ASGVPYY
Sbjct: 126 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYY 185

Query: 183 YPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSAWQPSA---EDGSYASGGNSGQG 224
           YPPMGQPA  PGGMMIGRPAMDP GVYAQPPSQAWQS WQ SA   +D SY SGG+SG G
Sbjct: 186 YPPMGQPA-VPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGHG 245

[Close]

BLAST of Carg24539 vs. TAIR 10
Match: AT1G54830.2 (nuclear factor Y, subunit C3 )

HSP 1 Score: 206.5 bits (524), Expect = 2.3e-53
Identity = 122/192 (63.54%), Postives = 138/192 (71.88%), Query Frame = 0


Query: 18  PPQAPVPAPHFHHLLQQQQ--QQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADED 77
           P  +  PA H  H  QQQQ  QQLQ FW  Q +EIE+  DFKNH LPLARIKKIMKADED
Sbjct: 26  PTGSDHPAYHQIHQQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADED 85

Query: 78  VRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 137
           VRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDI
Sbjct: 86  VRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDI 145

Query: 138 VPRDEIKDEA-GLGGMVGATASGVPY-YYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPS 197
           VPR++++DE  G  G   ATA+G PY Y PP   P G P GM++G P   P   Y   P 
Sbjct: 146 VPREDLRDEVLGGVGAEAATAAGYPYGYLPPGTAPIGNP-GMVMGNPGAYPPNPYMGQP- 205

Query: 198 QAWQSAWQPSAE 206
             WQ   QP  E
Sbjct: 206 -MWQ---QPGPE 211

[Close]

BLAST of Carg24539 vs. TAIR 10
Match: AT1G54830.1 (nuclear factor Y, subunit C3 )

HSP 1 Score: 206.5 bits (524), Expect = 2.3e-53
Identity = 122/192 (63.54%), Postives = 138/192 (71.88%), Query Frame = 0


Query: 18  PPQAPVPAPHFHHLLQQQQ--QQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADED 77
           P  +  PA H  H  QQQQ  QQLQ FW  Q +EIE+  DFKNH LPLARIKKIMKADED
Sbjct: 26  PTGSDHPAYHQIHQQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADED 85

Query: 78  VRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 137
           VRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDI
Sbjct: 86  VRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDI 145

Query: 138 VPRDEIKDEA-GLGGMVGATASGVPY-YYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPS 197
           VPR++++DE  G  G   ATA+G PY Y PP   P G P GM++G P   P   Y   P 
Sbjct: 146 VPREDLRDEVLGGVGAEAATAAGYPYGYLPPGTAPIGNP-GMVMGNPGAYPPNPYMGQP- 205

Query: 198 QAWQSAWQPSAE 206
             WQ   QP  E
Sbjct: 206 -MWQ---QPGPE 211

The following BLAST results are available for this feature:

BLAST of Carg24539 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930021.1	1.6e-120	100.00	nuclear transcription factor Y subunit C-1-like isoform X2 [Cucurbita moschata] ...	[more]
XP_023007663.1	4.6e-120	99.55	nuclear transcription factor Y subunit C-1-like isoform X2 [Cucurbita maxima]	[more]
XP_022930013.1	6.0e-120	100.00	nuclear transcription factor Y subunit C-1-like isoform X1 [Cucurbita moschata]	[more]
XP_023007652.1	1.7e-119	99.55	nuclear transcription factor Y subunit C-1-like isoform X1 [Cucurbita maxima]	[more]
KAG6587408.1	2.3e-119	99.55	Nuclear transcription factor Y subunit C-1, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Carg24539 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMP0	1.4e-92	81.82	Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FMV5	1.9e-89	76.33	Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
A6BLW4	2.3e-58	60.99	Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q9ZVL3	3.2e-52	63.54	Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q8L4B2	6.1e-51	61.90	Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Carg24539 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EVW5	7.6e-121	100.00	nuclear transcription factor Y subunit C-1-like isoform X2 OS=Cucurbita moschata...	[more]
A0A6J1L8A4	2.2e-120	99.55	nuclear transcription factor Y subunit C-1-like isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1ETU4	2.9e-120	100.00	nuclear transcription factor Y subunit C-1-like isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1KZA6	8.4e-120	99.55	nuclear transcription factor Y subunit C-1-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1C352	1.1e-111	95.07	nuclear transcription factor Y subunit C-1-like OS=Momordica charantia OX=3673 G...	[more]

BLAST of Carg24539 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48590.1	1.0e-93	81.82	nuclear factor Y, subunit C1	[more]
AT5G63470.1	1.4e-90	76.33	nuclear factor Y, subunit C4	[more]
AT5G63470.2	1.4e-90	76.33	nuclear factor Y, subunit C4	[more]
AT1G54830.2	2.3e-53	63.54	nuclear factor Y, subunit C3	[more]
AT1G54830.1	2.3e-53	63.54	nuclear factor Y, subunit C3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 60..123 e-value: 2.2E-17 score: 63.0
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 27..138 e-value: 4.2E-46 score: 158.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 33..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..224
None	No IPR available	PANTHER	PTHR10252:SF107	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4	coord: 1..223
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 1..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24539-RA	Carg24539-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity