Carg24526 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24526
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-type E3 ubiquitin transferase
Location	Carg_Chr19: 1723937 .. 1724902 (-)
RNA-Seq Expression	Carg24526
Synteny	Carg24526

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTCACCTCCACCACCCTTGGAGTTTCCTGATGATGATTCATCCCCAAATTTTTCACCTCTTGTTATAGCAATTATTGGAATTCTAGCAAGTGCTTTCCTTCTTTTAAGCTATTACACCATCATTTCAAAGTATTGTGGCAACACAAATCGCTTGTTTGGAACTGGCAATCATGACCCAAATGAGGAATTTGAAGATAATCATAACCCAACACTTCATGAACCATGGCATGTTGCCACAAATGGCTTGGATGAGGCAATGGTTAAGTCCATTACGGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGATCTGATTGCTCTGTTTGTCTTAATGAGTTTCAAGAAGATGATAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGTATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTATGTCGTGCTAATATCGTCTCTGTCGATGCTTCTCCTCCCGTTCACCTTCCTGCAAGCAATGCATATCCCATAACTAATGAGACCATGCCAGAGACTTCTCAGACACGTGACCCTGAGGCTGTTTCACAAGATTCAGAACGAAGTTTGAGAAGTGATTGTGGGAAGAACTCGGTTCGTGCCTTCAGTGACCTCGGAGTACCAGAGAAAAGAGACACTGTCATTGAGCTTAGAGACGGCGAATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAATCATATCATTATTGCGGATGTTCTACGTCTAAACGACGACGAGTATGAAGCAGGAAGTTCAGGTGATGTTGGATCATCCAAATGTTCAGTGGGAGAAGACAGCAGGTCCAGCCACAGAAAAACAATCCTGCATTGTGTTATGAGTCCTGTTTCGATTAAGAGATCGTTTTCAGGTGGAAGATTTTCTCTCATCAGGCATGGAAAAGAACAAAGAGAAATCGCCCGTGTCTGA

mRNA sequence

ATGTTGTCACCTCCACCACCCTTGGAGTTTCCTGATGATGATTCATCCCCAAATTTTTCACCTCTTGTTATAGCAATTATTGGAATTCTAGCAAGTGCTTTCCTTCTTTTAAGCTATTACACCATCATTTCAAAGTATTGTGGCAACACAAATCGCTTGTTTGGAACTGGCAATCATGACCCAAATGAGGAATTTGAAGATAATCATAACCCAACACTTCATGAACCATGGCATGTTGCCACAAATGGCTTGGATGAGGCAATGGTTAAGTCCATTACGGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGATCTGATTGCTCTGTTTGTCTTAATGAGTTTCAAGAAGATGATAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGTATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTATGTCGTGCTAATATCGTCTCTGTCGATGCTTCTCCTCCCGTTCACCTTCCTGCAAGCAATGCATATCCCATAACTAATGAGACCATGCCAGAGACTTCTCAGACACGTGACCCTGAGGCTGTTTCACAAGATTCAGAACGAAGTTTGAGAAGTGATTGTGGGAAGAACTCGGTTCGTGCCTTCAGTGACCTCGGAGTACCAGAGAAAAGAGACACTGTCATTGAGCTTAGAGACGGCGAATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAATCATATCATTATTGCGGATGTTCTACGTCTAAACGACGACGAGTATGAAGCAGGAAGTTCAGGTGATGTTGGATCATCCAAATGTTCAGTGGGAGAAGACAGCAGGTCCAGCCACAGAAAAACAATCCTGCATTGTGTTATGAGTCCTGTTTCGATTAAGAGATCGTTTTCAGGTGGAAGATTTTCTCTCATCAGGCATGGAAAAGAACAAAGAGAAATCGCCCGTGTCTGA

Coding sequence (CDS)

ATGTTGTCACCTCCACCACCCTTGGAGTTTCCTGATGATGATTCATCCCCAAATTTTTCACCTCTTGTTATAGCAATTATTGGAATTCTAGCAAGTGCTTTCCTTCTTTTAAGCTATTACACCATCATTTCAAAGTATTGTGGCAACACAAATCGCTTGTTTGGAACTGGCAATCATGACCCAAATGAGGAATTTGAAGATAATCATAACCCAACACTTCATGAACCATGGCATGTTGCCACAAATGGCTTGGATGAGGCAATGGTTAAGTCCATTACGGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGATCTGATTGCTCTGTTTGTCTTAATGAGTTTCAAGAAGATGATAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGTATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTATGTCGTGCTAATATCGTCTCTGTCGATGCTTCTCCTCCCGTTCACCTTCCTGCAAGCAATGCATATCCCATAACTAATGAGACCATGCCAGAGACTTCTCAGACACGTGACCCTGAGGCTGTTTCACAAGATTCAGAACGAAGTTTGAGAAGTGATTGTGGGAAGAACTCGGTTCGTGCCTTCAGTGACCTCGGAGTACCAGAGAAAAGAGACACTGTCATTGAGCTTAGAGACGGCGAATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAATCATATCATTATTGCGGATGTTCTACGTCTAAACGACGACGAGTATGAAGCAGGAAGTTCAGGTGATGTTGGATCATCCAAATGTTCAGTGGGAGAAGACAGCAGGTCCAGCCACAGAAAAACAATCCTGCATTGTGTTATGAGTCCTGTTTCGATTAAGAGATCGTTTTCAGGTGGAAGATTTTCTCTCATCAGGCATGGAAAAGAACAAAGAGAAATCGCCCGTGTCTGA

Protein sequence

MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHDPNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPETSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMDHCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVSIKRSFSGGRFSLIRHGKEQREIARV

Homology

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BLAST of Carg24526 vs. NCBI nr
Match: KAG7011386.1 (E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 649.4 bits (1674), Expect = 1.6e-182
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0


Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD
Sbjct: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD
Sbjct: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE
Sbjct: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180

Query: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240
           TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD
Sbjct: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240

Query: 241 HCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVSIKRS 300
           HCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVSIKRS
Sbjct: 241 HCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVSIKRS 300

Query: 301 FSGGRFSLIRHGKEQREIARV 322
           FSGGRFSLIRHGKEQREIARV
Sbjct: 301 FSGGRFSLIRHGKEQREIARV 321

[Close]

BLAST of Carg24526 vs. NCBI nr
Match: KAG6571657.1 (E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 642.1 bits (1655), Expect = 2.5e-180
Identity = 317/321 (98.75%), Postives = 319/321 (99.38%), Query Frame = 0


Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD
Sbjct: 35  MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 94

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCL+EFQEDD
Sbjct: 95  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLSEFQEDD 154

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE
Sbjct: 155 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 214

Query: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240
           TSQT DPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD
Sbjct: 215 TSQTHDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 274

Query: 241 HCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVSIKRS 300
           HCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDS+SSHRKTILHCVMSPVSIKRS
Sbjct: 275 HCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSKSSHRKTILHCVMSPVSIKRS 334

Query: 301 FSGGRFSLIRHGKEQREIARV 322
           FS GRFSLIRHGKEQREIARV
Sbjct: 335 FSSGRFSLIRHGKEQREIARV 355

[Close]

BLAST of Carg24526 vs. NCBI nr
Match: XP_023553748.1 (RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 632.5 bits (1630), Expect = 2.0e-177
Identity = 312/321 (97.20%), Postives = 316/321 (98.44%), Query Frame = 0


Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD
Sbjct: 35  MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 94

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSIT+CKYKRGDGLVEGSDCSVCL+EFQEDD
Sbjct: 95  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITICKYKRGDGLVEGSDCSVCLSEFQEDD 154

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE
Sbjct: 155 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 214

Query: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240
           TSQT DPEAVSQDSERS RS+CGKNSVRAFSDLGV EKRDTVIELRDGELQQIRRSISMD
Sbjct: 215 TSQTHDPEAVSQDSERSFRSNCGKNSVRAFSDLGVLEKRDTVIELRDGELQQIRRSISMD 274

Query: 241 HCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVSIKRS 300
           HCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDS+SSHRKTILHCVMSPVSIKRS
Sbjct: 275 HCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSKSSHRKTILHCVMSPVSIKRS 334

Query: 301 FSGGRFSLIRHGKEQREIARV 322
           FS GRFSLIRHGKE REIARV
Sbjct: 335 FSSGRFSLIRHGKEHREIARV 355

[Close]

BLAST of Carg24526 vs. NCBI nr
Match: XP_022967441.1 (RING-H2 finger protein ATL52-like [Cucurbita maxima])

HSP 1 Score: 631.7 bits (1628), Expect = 3.4e-177
Identity = 312/321 (97.20%), Postives = 315/321 (98.13%), Query Frame = 0


Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD
Sbjct: 35  MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 94

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCL+EFQEDD
Sbjct: 95  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLSEFQEDD 154

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE
Sbjct: 155 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 214

Query: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240
           TSQT DPEAVSQDSERSLRSDCGK +VRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD
Sbjct: 215 TSQTHDPEAVSQDSERSLRSDCGKTTVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 274

Query: 241 HCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVSIKRS 300
           HCSQNHIIIADVL LNDDEYEAGSSGDVGSSKCSVGEDS+SSHRKTILHCVMSPVSIKRS
Sbjct: 275 HCSQNHIIIADVLHLNDDEYEAGSSGDVGSSKCSVGEDSKSSHRKTILHCVMSPVSIKRS 334

Query: 301 FSGGRFSLIRHGKEQREIARV 322
           FS GRFSLIRHGKE  EIARV
Sbjct: 335 FSSGRFSLIRHGKEHWEIARV 355

[Close]

BLAST of Carg24526 vs. NCBI nr
Match: KAA0038569.1 (E3 ubiquitin-protein ligase [Cucumis melo var. makuwa] >TYK31174.1 E3 ubiquitin-protein ligase [Cucumis melo var. makuwa])

HSP 1 Score: 534.3 bits (1375), Expect = 7.4e-148
Identity = 266/325 (81.85%), Postives = 291/325 (89.54%), Query Frame = 0


Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           M SPPPPLEFPDD+S PNFSPLVIAIIGILASA LL++YYTIISKYCGNTNRL GTGN+D
Sbjct: 37  MFSPPPPLEFPDDNSGPNFSPLVIAIIGILASALLLVTYYTIISKYCGNTNRLSGTGNYD 96

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           P+EE+EDNHNPTLHEPWHVAT GLDEA++KSITVCKYKRGDGLVEGSDCSVCL+EFQED+
Sbjct: 97  PSEEYEDNHNPTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDE 156

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANI+S++A  PV LPAS AYPITNET+PE
Sbjct: 157 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIISINAGSPVQLPASTAYPITNETVPE 216

Query: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240
           +SQ  D EAVS DS +S  ++  KNSVRAFSDLG  EKRDT+IELRDG LQQIRRSISMD
Sbjct: 217 SSQDNDHEAVSLDSGQSFSNEDAKNSVRAFSDLGNLEKRDTIIELRDGRLQQIRRSISMD 276

Query: 241 HCSQNHIIIADVLRLNDDEY----EAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVS 300
           HCSQN +IIADVLRLN+DE+    EAGSSGDVGSSK SVGEDSRSSHRK ILHCVMSPVS
Sbjct: 277 HCSQNRLIIADVLRLNEDEFGGIDEAGSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVS 336

Query: 301 IKRSFSGGRFSLIRHGKEQREIARV 322
           +KRSFS GR SL +HG+E R IA V
Sbjct: 337 MKRSFSSGRLSLTKHGREHRGIAPV 361

[Close]

BLAST of Carg24526 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 9.7e-50
Identity = 144/339 (42.48%), Postives = 194/339 (57.23%), Query Frame = 0


Query: 4   PPPPLEFPDDD---SSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 63
           PPPP  F DDD   SS +FSPL+IA+IGIL SA +L+SYYT+ISKYC   ++        
Sbjct: 36  PPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQT------S 95

Query: 64  PNEEFEDNHNPT--LHEPWHVATN--GLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEF 123
            +E    NHN          ++TN  GL+E+M+KSITV KYK GDG V+GSDCSVCL+EF
Sbjct: 96  SSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEF 155

Query: 124 QEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNE 183
           +E++SLRLLPKC+HAFHL CIDTWLKSHSNCPLCRA +  V+ +P   +  + +  + N+
Sbjct: 156 EENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVN-NPTASVGQNVSVVVANQ 215

Query: 184 TMPE----------------TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRD 243
           +                    SQT D ++V    +  +    G  +  A S+L +PE+R 
Sbjct: 216 SNSAHQTGSVSEINLNLAGYESQTGDFDSVVVIEDLEI----GSRNSDARSELQLPEERR 275

Query: 244 TVIELRDGELQQIRRSISMDHCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSR 303
              E +D +   IRRS+S++  S   + IADVLR  +D  E G SG VG+S+    E+  
Sbjct: 276 ---ETKDEDSLPIRRSVSLN--SGVVVSIADVLREIED--EEGESGGVGTSQRR--EEGE 335

Query: 304 SSHRKTILHCVMSPVS------IKRSFSGGRFSLIRHGK 314
               KTI     +  S        RS S GRF   R+ +
Sbjct: 336 DGDGKTIPPTEANQRSGGVSGFFVRSLSTGRFIFSRYDR 354

[Close]

BLAST of Carg24526 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 194.9 bits (494), Expect = 1.4e-48
Identity = 144/338 (42.60%), Postives = 181/338 (53.55%), Query Frame = 0


Query: 4   PPPPLEF----PDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTN----RLFG 63
           PPPP +      DD S P FSPLVIAIIG+LASAFLL+SYYT ISKYCG  +    R+FG
Sbjct: 36  PPPPFDVAGTSADDSSGPVFSPLVIAIIGVLASAFLLVSYYTFISKYCGTVSSLRGRVFG 95

Query: 64  T-------GNHDPNEEFEDNHNPTLHEPWHVA-TNGLDEAMVKSITVCKYKRGDGLVEGS 123
           +       G    +     +     HE W+V+  +GLDE ++  ITVCKY+RGDG V  +
Sbjct: 96  SSSGGAAYGGGAGSGGRHGHGQSRSHESWNVSPPSGLDETLINKITVCKYRRGDGFVHTT 155

Query: 124 DCSVCLNEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVD---ASPPVH 183
           DCSVCL EF + +SLRLLP+CSHAFH QCIDTWLKSHSNCPLCRANI  V    ASP   
Sbjct: 156 DCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITFVTVGLASPEPE 215

Query: 184 --LPASNAYPITNETMP-----ETSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPE 243
              P       T+E +      E       EAVS+ S      D  K+           E
Sbjct: 216 GCAPGETGGDNTHEVVVVMDGLENLCEEQQEAVSRASTADDDHD-AKDVAEGM------E 275

Query: 244 KRDTVIELRDGELQQIRRSISMDHCSQNHIIIADVLRLN-DDEYEAGS-----SGDVGSS 303
           + +   E+R+      R + S D    N + IADVL+ + +DE  A       +G  G+S
Sbjct: 276 EANGAAEIREEGSPPKRGASSFDLHRDNRMCIADVLQESMEDELTAARESGLLAGGAGTS 335

Query: 304 KCSVGEDSRS----SHRKTILHCVMSPVSIKRSFSGGR 306
           +   GE+S+     S R   L   M  +  KR  SGGR
Sbjct: 336 RRCHGENSKGRGGRSRRALQLQDAMEALPGKRLPSGGR 366

[Close]

BLAST of Carg24526 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 186.4 bits (472), Expect = 5.0e-46
Identity = 133/292 (45.55%), Postives = 172/292 (58.90%), Query Frame = 0


Query: 1   MLSPPPP---LEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYC---------- 60
           ++ PPPP   L+  DD SS +FSPL+IA+IGILASAF+L+SYYT+ISKYC          
Sbjct: 35  VIFPPPPSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSST 94

Query: 61  --GNTNRLFG----TGNHDPNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGD 120
                NR+       G ++ N     N N T+        +GLDE+++KSITV KY++ D
Sbjct: 95  SAAAINRISSDYTWQGTNNNNNNGATNPNQTIGGG---GGDGLDESLIKSITVYKYRKMD 154

Query: 121 GLVEGSDCSVCLNEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASP 180
           G VE SDCSVCL+EFQE++SLRLLPKC+HAFH+ CIDTWLKSHSNCPLCRA IV+  A  
Sbjct: 155 GFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVE 214

Query: 181 PVHLPASNAYPITNETMPETSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDT 240
            V L  +N   +T      T        V+ D E S   +    +V   S    PE +D+
Sbjct: 215 IVDL--TNQQIVTENNSISTGDD-SVVVVNLDLENSRSRN---ETVNEGSTPKPPEMQDS 274

Query: 241 VIELRDGELQQIRRSISMDHCSQNHIIIADVLR-LNDDEYEAGSSGDVGSSK 273
               RDGE    RRS S+ +     + IAD+LR + DDE  AG    VG+S+
Sbjct: 275 ----RDGE---ERRSASL-NSGGGVVSIADILREIEDDEESAG----VGTSR 305

[Close]

BLAST of Carg24526 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 6.7e-35
Identity = 83/172 (48.26%), Postives = 108/172 (62.79%), Query Frame = 0


Query: 5   PPPL---EFPDDD--SSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGN--TNRLFG-T 64
           PPP+   +F +D   S+PN SPLVIAI GI A+AFLL +YYT++SKYC N  TN     +
Sbjct: 39  PPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASES 98

Query: 65  GNHDPNEEFEDNHNPTLHEPWHV--ATNGLDEAMVKSITVCKYKRGDG--LVEGSDCSVC 124
           G  D   +          +P+ +  +T GLD+ ++K I   K K+      + G+DCS+C
Sbjct: 99  GRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSIC 158

Query: 125 LNEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVH 165
           L EF ED+SLRLLPKC+H FH+ CID WLKSHSNCPLCRA I+      P H
Sbjct: 159 LGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQPEH 210

[Close]

BLAST of Carg24526 vs. ExPASy Swiss-Prot
Match: Q8LFY8 (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-34
Identity = 84/216 (38.89%), Postives = 117/216 (54.17%), Query Frame = 0


Query: 11  PDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRL----FGTGNHDPN---- 70
           P  DSS +   + I  I     A LL  ++ +   +  + NR+    + + N D +    
Sbjct: 72  PSQDSSSSLDAISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDNDTVME 131

Query: 71  EEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDDSL 130
           EEF+D      H  W + T GL ++++ SIT+C YKRGDGL+E +DC VCLNEF+ED+SL
Sbjct: 132 EEFQDREQVD-HPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESL 191

Query: 131 RLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVH------LPASNAYPITNE 190
           RLLPKC+HAFH+ CIDTWL SH+NCPLCRA I  +  + P +       P  +   + N+
Sbjct: 192 RLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGGSGSHLEND 251

Query: 191 TMPETSQTRDPEAVSQDSERSLRSDCGKNSVRAFSD 213
            + E         V  D + S  SD      R  SD
Sbjct: 252 GVDEEDHGEIENRVDSDFKESDDSDIRIEIYRFDSD 286

[Close]

BLAST of Carg24526 vs. ExPASy TrEMBL
Match: A0A6J1HS24 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111466980 PE=3 SV=1)

HSP 1 Score: 631.7 bits (1628), Expect = 1.7e-177
Identity = 312/321 (97.20%), Postives = 315/321 (98.13%), Query Frame = 0


Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD
Sbjct: 35  MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 94

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCL+EFQEDD
Sbjct: 95  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLSEFQEDD 154

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE
Sbjct: 155 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 214

Query: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240
           TSQT DPEAVSQDSERSLRSDCGK +VRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD
Sbjct: 215 TSQTHDPEAVSQDSERSLRSDCGKTTVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 274

Query: 241 HCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVSIKRS 300
           HCSQNHIIIADVL LNDDEYEAGSSGDVGSSKCSVGEDS+SSHRKTILHCVMSPVSIKRS
Sbjct: 275 HCSQNHIIIADVLHLNDDEYEAGSSGDVGSSKCSVGEDSKSSHRKTILHCVMSPVSIKRS 334

Query: 301 FSGGRFSLIRHGKEQREIARV 322
           FS GRFSLIRHGKE  EIARV
Sbjct: 335 FSSGRFSLIRHGKEHWEIARV 355

[Close]

BLAST of Carg24526 vs. ExPASy TrEMBL
Match: A0A5D3E5F1 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004560 PE=3 SV=1)

HSP 1 Score: 534.3 bits (1375), Expect = 3.6e-148
Identity = 266/325 (81.85%), Postives = 291/325 (89.54%), Query Frame = 0


Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           M SPPPPLEFPDD+S PNFSPLVIAIIGILASA LL++YYTIISKYCGNTNRL GTGN+D
Sbjct: 37  MFSPPPPLEFPDDNSGPNFSPLVIAIIGILASALLLVTYYTIISKYCGNTNRLSGTGNYD 96

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           P+EE+EDNHNPTLHEPWHVAT GLDEA++KSITVCKYKRGDGLVEGSDCSVCL+EFQED+
Sbjct: 97  PSEEYEDNHNPTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDE 156

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANI+S++A  PV LPAS AYPITNET+PE
Sbjct: 157 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIISINAGSPVQLPASTAYPITNETVPE 216

Query: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240
           +SQ  D EAVS DS +S  ++  KNSVRAFSDLG  EKRDT+IELRDG LQQIRRSISMD
Sbjct: 217 SSQDNDHEAVSLDSGQSFSNEDAKNSVRAFSDLGNLEKRDTIIELRDGRLQQIRRSISMD 276

Query: 241 HCSQNHIIIADVLRLNDDEY----EAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVS 300
           HCSQN +IIADVLRLN+DE+    EAGSSGDVGSSK SVGEDSRSSHRK ILHCVMSPVS
Sbjct: 277 HCSQNRLIIADVLRLNEDEFGGIDEAGSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVS 336

Query: 301 IKRSFSGGRFSLIRHGKEQREIARV 322
           +KRSFS GR SL +HG+E R IA V
Sbjct: 337 MKRSFSSGRLSLTKHGREHRGIAPV 361

[Close]

BLAST of Carg24526 vs. ExPASy TrEMBL
Match: A0A1S4E5H2 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103503554 PE=3 SV=1)

HSP 1 Score: 533.1 bits (1372), Expect = 8.0e-148
Identity = 266/325 (81.85%), Postives = 290/325 (89.23%), Query Frame = 0


Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           M SPPPPLEFPDD+S PNFSPLVIAIIGILASA LL++YYTIISKYCGNTNRL GTGN+D
Sbjct: 37  MFSPPPPLEFPDDNSGPNFSPLVIAIIGILASALLLVTYYTIISKYCGNTNRLSGTGNYD 96

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           P+EE+EDNHNPTLHEPWHVAT GLDEA++KSITVCKYKRGDGLVEGSDCSVCL+EFQED+
Sbjct: 97  PSEEYEDNHNPTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDE 156

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANI+S++A  PV LPAS AYPITNET+PE
Sbjct: 157 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIISINAGSPVQLPASTAYPITNETVPE 216

Query: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240
           +SQ  D EAVS DS +S  ++  KNSVRAFSDLG  EKRDT IELRDG LQQIRRSISMD
Sbjct: 217 SSQDNDHEAVSLDSGQSFSNEDAKNSVRAFSDLGNLEKRDTTIELRDGRLQQIRRSISMD 276

Query: 241 HCSQNHIIIADVLRLNDDEY----EAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVS 300
           HCSQN +IIADVLRLN+DE+    EAGSSGDVGSSK SVGEDSRSSHRK ILHCVMSPVS
Sbjct: 277 HCSQNRLIIADVLRLNEDEFGGIDEAGSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVS 336

Query: 301 IKRSFSGGRFSLIRHGKEQREIARV 322
           +KRSFS GR SL +HG+E R IA V
Sbjct: 337 MKRSFSSGRLSLTKHGREHRGIAPV 361

[Close]

BLAST of Carg24526 vs. ExPASy TrEMBL
Match: A0A0A0LH71 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G901190 PE=3 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 2.3e-147
Identity = 267/325 (82.15%), Postives = 291/325 (89.54%), Query Frame = 0


Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           M SPPPPLEFP D+S P+FSPLVIAIIGILASAFLL++YYTIISKYCGNTNRL GTGNHD
Sbjct: 37  MFSPPPPLEFP-DNSGPHFSPLVIAIIGILASAFLLVTYYTIISKYCGNTNRLSGTGNHD 96

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           P+EE+EDNHNPT HEPWHVAT GLDEA++KSITVCKYKR DGLVEGSDCSVCL+EFQED+
Sbjct: 97  PSEEYEDNHNPTFHEPWHVATTGLDEALIKSITVCKYKREDGLVEGSDCSVCLSEFQEDE 156

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANI+S++A  PV LPAS AYPITNET+PE
Sbjct: 157 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIISINAGSPVQLPASTAYPITNETVPE 216

Query: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240
           TSQ  D EAVS DS +S  ++ GKNSVRAFSDLG  EKRDT+IELRDG LQQIRRSISMD
Sbjct: 217 TSQDNDYEAVSLDSGQSFSNEDGKNSVRAFSDLGNLEKRDTIIELRDGRLQQIRRSISMD 276

Query: 241 HCSQNHIIIADVLRLNDDEY----EAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVS 300
           HCSQNHIIIADVLRLN+D++    EAGSSGDVGSSK SVGEDSRSSHRK ILHCVMSPVS
Sbjct: 277 HCSQNHIIIADVLRLNEDDFGGIDEAGSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVS 336

Query: 301 IKRSFSGGRFSLIRHGKEQREIARV 322
           +KRSFS GR SL +HG+E R IA V
Sbjct: 337 MKRSFSSGRLSLTKHGREHRGIAPV 360

[Close]

BLAST of Carg24526 vs. ExPASy TrEMBL
Match: A0A6J1E013 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111026146 PE=3 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 3.1e-144
Identity = 264/332 (79.52%), Postives = 282/332 (84.94%), Query Frame = 0


Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           M SPPPPLEFPDDDS PNFSPLVIAIIGILASAFLL+SYYTIISKYCGNTNRL  TGNHD
Sbjct: 126 MFSPPPPLEFPDDDSGPNFSPLVIAIIGILASAFLLVSYYTIISKYCGNTNRLSRTGNHD 185

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           PNEEFEDNHNPTLHEPWH+AT GLDEA++KSITVCKYKRGDGLVEGSDC+VCL+EFQED+
Sbjct: 186 PNEEFEDNHNPTLHEPWHIATTGLDEALIKSITVCKYKRGDGLVEGSDCAVCLSEFQEDE 245

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTW KSHSNCPLCRA IVS  AS P  LP S A PIT+E MPE
Sbjct: 246 SLRLLPKCSHAFHLQCIDTWFKSHSNCPLCRAYIVSFSASSPFQLPPSTAVPITSEAMPE 305

Query: 181 TSQTRDPEAVSQDSERSLRSD-------CGKNSVRAFSDLGVPEKRDTVIELRDGELQQI 240
           TS T D +AVSQDS RS  +D       C KNS RA SDLG  EKRDTVIELRDG LQQI
Sbjct: 306 TSHTTDHDAVSQDSGRSFGNDDLMQAHNCAKNSFRALSDLGNLEKRDTVIELRDGRLQQI 365

Query: 241 RRSISMDHCSQNHIIIADVLRLNDDEY----EAGSSGDVGSSKCSVGEDSRSSHRKTILH 300
           RRSISMDHC QNH IIAD+L+LN+D +    E+GSSGDVGSSK SVGEDS+SSHRK ILH
Sbjct: 366 RRSISMDHCCQNHTIIADILQLNEDGFGAIDESGSSGDVGSSKHSVGEDSKSSHRKRILH 425

Query: 301 CVMSPVSIKRSFSGGRFSLIRHGKEQREIARV 322
           CVMSPVS+KRSFS GRFSL RHG+E R I  V
Sbjct: 426 CVMSPVSMKRSFSSGRFSLTRHGREHRGIGPV 457

[Close]

BLAST of Carg24526 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 198.7 bits (504), Expect = 6.9e-51
Identity = 144/339 (42.48%), Postives = 194/339 (57.23%), Query Frame = 0


Query: 4   PPPPLEFPDDD---SSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 63
           PPPP  F DDD   SS +FSPL+IA+IGIL SA +L+SYYT+ISKYC   ++        
Sbjct: 36  PPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQT------S 95

Query: 64  PNEEFEDNHNPT--LHEPWHVATN--GLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEF 123
            +E    NHN          ++TN  GL+E+M+KSITV KYK GDG V+GSDCSVCL+EF
Sbjct: 96  SSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEF 155

Query: 124 QEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNE 183
           +E++SLRLLPKC+HAFHL CIDTWLKSHSNCPLCRA +  V+ +P   +  + +  + N+
Sbjct: 156 EENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVN-NPTASVGQNVSVVVANQ 215

Query: 184 TMPE----------------TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRD 243
           +                    SQT D ++V    +  +    G  +  A S+L +PE+R 
Sbjct: 216 SNSAHQTGSVSEINLNLAGYESQTGDFDSVVVIEDLEI----GSRNSDARSELQLPEERR 275

Query: 244 TVIELRDGELQQIRRSISMDHCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSR 303
              E +D +   IRRS+S++  S   + IADVLR  +D  E G SG VG+S+    E+  
Sbjct: 276 ---ETKDEDSLPIRRSVSLN--SGVVVSIADVLREIED--EEGESGGVGTSQRR--EEGE 335

Query: 304 SSHRKTILHCVMSPVS------IKRSFSGGRFSLIRHGK 314
               KTI     +  S        RS S GRF   R+ +
Sbjct: 336 DGDGKTIPPTEANQRSGGVSGFFVRSLSTGRFIFSRYDR 354

[Close]

BLAST of Carg24526 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 186.4 bits (472), Expect = 3.5e-47
Identity = 133/292 (45.55%), Postives = 172/292 (58.90%), Query Frame = 0


Query: 1   MLSPPPP---LEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYC---------- 60
           ++ PPPP   L+  DD SS +FSPL+IA+IGILASAF+L+SYYT+ISKYC          
Sbjct: 35  VIFPPPPSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSST 94

Query: 61  --GNTNRLFG----TGNHDPNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGD 120
                NR+       G ++ N     N N T+        +GLDE+++KSITV KY++ D
Sbjct: 95  SAAAINRISSDYTWQGTNNNNNNGATNPNQTIGGG---GGDGLDESLIKSITVYKYRKMD 154

Query: 121 GLVEGSDCSVCLNEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASP 180
           G VE SDCSVCL+EFQE++SLRLLPKC+HAFH+ CIDTWLKSHSNCPLCRA IV+  A  
Sbjct: 155 GFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVE 214

Query: 181 PVHLPASNAYPITNETMPETSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDT 240
            V L  +N   +T      T        V+ D E S   +    +V   S    PE +D+
Sbjct: 215 IVDL--TNQQIVTENNSISTGDD-SVVVVNLDLENSRSRN---ETVNEGSTPKPPEMQDS 274

Query: 241 VIELRDGELQQIRRSISMDHCSQNHIIIADVLR-LNDDEYEAGSSGDVGSSK 273
               RDGE    RRS S+ +     + IAD+LR + DDE  AG    VG+S+
Sbjct: 275 ----RDGE---ERRSASL-NSGGGVVSIADILREIEDDEESAG----VGTSR 305

[Close]

BLAST of Carg24526 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 149.4 bits (376), Expect = 4.8e-36
Identity = 83/172 (48.26%), Postives = 108/172 (62.79%), Query Frame = 0


Query: 5   PPPL---EFPDDD--SSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGN--TNRLFG-T 64
           PPP+   +F +D   S+PN SPLVIAI GI A+AFLL +YYT++SKYC N  TN     +
Sbjct: 39  PPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASES 98

Query: 65  GNHDPNEEFEDNHNPTLHEPWHV--ATNGLDEAMVKSITVCKYKRGDG--LVEGSDCSVC 124
           G  D   +          +P+ +  +T GLD+ ++K I   K K+      + G+DCS+C
Sbjct: 99  GRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSIC 158

Query: 125 LNEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVH 165
           L EF ED+SLRLLPKC+H FH+ CID WLKSHSNCPLCRA I+      P H
Sbjct: 159 LGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQPEH 210

[Close]

BLAST of Carg24526 vs. TAIR 10
Match: AT1G72220.1 (RING/U-box superfamily protein )

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-35
Identity = 84/216 (38.89%), Postives = 117/216 (54.17%), Query Frame = 0


Query: 11  PDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRL----FGTGNHDPN---- 70
           P  DSS +   + I  I     A LL  ++ +   +  + NR+    + + N D +    
Sbjct: 72  PSQDSSSSLDAISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDNDTVME 131

Query: 71  EEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDDSL 130
           EEF+D      H  W + T GL ++++ SIT+C YKRGDGL+E +DC VCLNEF+ED+SL
Sbjct: 132 EEFQDREQVD-HPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESL 191

Query: 131 RLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVH------LPASNAYPITNE 190
           RLLPKC+HAFH+ CIDTWL SH+NCPLCRA I  +  + P +       P  +   + N+
Sbjct: 192 RLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGGSGSHLEND 251

Query: 191 TMPETSQTRDPEAVSQDSERSLRSDCGKNSVRAFSD 213
            + E         V  D + S  SD      R  SD
Sbjct: 252 GVDEEDHGEIENRVDSDFKESDDSDIRIEIYRFDSD 286

[Close]

BLAST of Carg24526 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-31
Identity = 86/241 (35.68%), Postives = 125/241 (51.87%), Query Frame = 0


Query: 4   PPPPLEFPDDDSSPNFSPLVIAIIG-ILASAFLLLSYYTIIS---KYCGNTNRLFGTGNH 63
           PPPP   P         P  I ++G I+   FL+   Y  I+   +    +     T   
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQ 85

Query: 64  DPNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQED 123
           +  +E E+      H  W + T GL  + + SITV  +K+G+G+++G++CSVCLNEF+ED
Sbjct: 86  EDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEED 145

Query: 124 DSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMP 183
           +SLRLLPKCSHAFHL CIDTWL SH NCPLCRA ++ +   PP     +N  P       
Sbjct: 146 ESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLI-TEPPHQETETNHQP------- 205

Query: 184 ETSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPE-KRDTVIELRDGELQQIRRSIS 240
             S++ +     QDS RS R+           ++ +P  + D       G ++ +RRS S
Sbjct: 206 -DSESSNDLRGRQDSSRSRRN----------HNIFLPRAQSDLANYCGSGRVENVRRSFS 247

The following BLAST results are available for this feature:

BLAST of Carg24526 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011386.1	1.6e-182	100.00	E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6571657.1	2.5e-180	98.75	E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023553748.1	2.0e-177	97.20	RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967441.1	3.4e-177	97.20	RING-H2 finger protein ATL52-like [Cucurbita maxima]	[more]
KAA0038569.1	7.4e-148	81.85	E3 ubiquitin-protein ligase [Cucumis melo var. makuwa] >TYK31174.1 E3 ubiquitin-...	[more]

BLAST of Carg24526 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF64	9.7e-50	42.48	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q7XLY8	1.4e-48	42.60	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q9SRQ8	5.0e-46	45.55	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
P0C041	6.7e-35	48.26	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]
Q8LFY8	1.5e-34	38.89	RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2	[more]

BLAST of Carg24526 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HS24	1.7e-177	97.20	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111466980 P...	[more]
A0A5D3E5F1	3.6e-148	81.85	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S4E5H2	8.0e-148	81.85	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103503554 PE=3 ...	[more]
A0A0A0LH71	2.3e-147	82.15	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G901190 PE...	[more]
A0A6J1E013	3.1e-144	79.52	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11102614...	[more]

BLAST of Carg24526 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17600.1	6.9e-51	42.48	RING/U-box superfamily protein	[more]
AT3G03550.1	3.5e-47	45.55	RING/U-box superfamily protein	[more]
AT4G17905.1	4.8e-36	48.26	RING/U-box superfamily protein	[more]
AT1G72220.1	1.1e-35	38.89	RING/U-box superfamily protein	[more]
AT5G10380.1	1.2e-31	35.68	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 109..150 e-value: 6.2E-8 score: 42.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 108..151 e-value: 3.6E-14 score: 52.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 109..151 score: 13.049892
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 84..159 e-value: 3.1E-22 score: 79.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..188
None	No IPR available	PANTHER	PTHR45676:SF108	E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE	coord: 2..311
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 108..151 e-value: 7.87343E-17 score: 71.1871
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 103..159
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 2..311

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24526-RA	Carg24526-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane