Carg24482 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24482
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLOB domain-containing protein 15-like
LocationCarg_Chr04: 584333 .. 585248 (-)
RNA-Seq ExpressionCarg24482
SyntenyCarg24482
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGCTGAATGTCCAAACAAAGGTAAGAAAATGCATCTCTTTCTCTCTCTCTCGAGATCGAATAATTTGGTCGACGGTTTCTTTTTGTTCTTCAAAATATTATACTACAATTTGAGCTGGACGATTCAATCCGTTCTTAATTTATAGTTCTTGATCCAAATTGATTGATATTGAGTTATGTTCTTGAATCCGTTCTTAATTTATAGTTCTTGATTCAAATTGATTGATATTGAGTTATATTCAAATTAATTGTCACAGATGGAGAAAGATCGGAGGTGTTAGGGAAGAAGAGAAAGCGAGCGGTATCATCAAATATTCCTCCGCGACACACGCTGCATGGTCCTCCTAGGACTCTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCCTAAGAAGAAGATGTGGTCAACAATGTCCCTTCGCCCCATATTTCTCCCCCCACGAGCCTCACAAGTTCGCCTCGGTCCACAAGGTCTTCGGCGCCAGCAATGTCTCCAAAATGCTCAAGGTAACGGTAACGATAAGAATTTTATTGATATAAAATTGAAAGTTTAAAGACCGTGATAGAATATTTTTTTACAGGAAGTTCCGAAAAATGAAAGAGATAATACTGCGAATAGTCTAATTTACGAAGCTAATGTGAGGCTGAGAGATCCTGTGTATGGTTGCATGGGCGCCATTTCATGTCTACAACACCAAGTCCAAGCGTTACAAGCTACACTCACTGCAGTTAGAGCTGAGATACTGAGATGCAAATATAGACAAGGTAATATGGTTTCCATTGCCGTACAGCCACCGCCACCGCCGCCTCCCGAGCTACCTCCGCCGCCTCATCAGGATGCTTCTTCCTCTTCCTCCACCTTGTACAACCGGCCCACGGTGGCTGCTGATTCATCCTTTTTCGCATTTTAG

mRNA sequence

ATGCCAGCTGAATGTCCAAACAAAGATGGAGAAAGATCGGAGGTGTTAGGGAAGAAGAGAAAGCGAGCGGTATCATCAAATATTCCTCCGCGACACACGCTGCATGGTCCTCCTAGGACTCTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCCTAAGAAGAAGATGTGGTCAACAATGTCCCTTCGCCCCATATTTCTCCCCCCACGAGCCTCACAAGTTCGCCTCGGTCCACAAGGTCTTCGGCGCCAGCAATGTCTCCAAAATGCTCAAGGAAGTTCCGAAAAATGAAAGAGATAATACTGCGAATAGTCTAATTTACGAAGCTAATGTGAGGCTGAGAGATCCTGTGTATGGTTGCATGGGCGCCATTTCATGTCTACAACACCAAGTCCAAGCGTTACAAGCTACACTCACTGCAGTTAGAGCTGAGATACTGAGATGCAAATATAGACAAGGTAATATGGTTTCCATTGCCGTACAGCCACCGCCACCGCCGCCTCCCGAGCTACCTCCGCCGCCTCATCAGGATGCTTCTTCCTCTTCCTCCACCTTGTACAACCGGCCCACGGTGGCTGCTGATTCATCCTTTTTCGCATTTTAG

Coding sequence (CDS)

ATGCCAGCTGAATGTCCAAACAAAGATGGAGAAAGATCGGAGGTGTTAGGGAAGAAGAGAAAGCGAGCGGTATCATCAAATATTCCTCCGCGACACACGCTGCATGGTCCTCCTAGGACTCTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCCTAAGAAGAAGATGTGGTCAACAATGTCCCTTCGCCCCATATTTCTCCCCCCACGAGCCTCACAAGTTCGCCTCGGTCCACAAGGTCTTCGGCGCCAGCAATGTCTCCAAAATGCTCAAGGAAGTTCCGAAAAATGAAAGAGATAATACTGCGAATAGTCTAATTTACGAAGCTAATGTGAGGCTGAGAGATCCTGTGTATGGTTGCATGGGCGCCATTTCATGTCTACAACACCAAGTCCAAGCGTTACAAGCTACACTCACTGCAGTTAGAGCTGAGATACTGAGATGCAAATATAGACAAGGTAATATGGTTTCCATTGCCGTACAGCCACCGCCACCGCCGCCTCCCGAGCTACCTCCGCCGCCTCATCAGGATGCTTCTTCCTCTTCCTCCACCTTGTACAACCGGCCCACGGTGGCTGCTGATTCATCCTTTTTCGCATTTTAG

Protein sequence

MPAECPNKDGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSFFAF
Homology
BLAST of Carg24482 vs. NCBI nr
Match: KAG7030631.1 (LOB domain-containing protein 13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 409.1 bits (1050), Expect = 2.3e-110
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0

Query: 1   MPAECPNKDGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQ 60
           MPAECPNKDGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQ
Sbjct: 1   MPAECPNKDGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQ 60

Query: 61  CPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPVYG 120
           CPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPVYG
Sbjct: 61  CPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPVYG 120

Query: 121 CMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDAS 180
           CMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDAS
Sbjct: 121 CMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDAS 180

Query: 181 SSSSTLYNRPTVAADSSFFAF 202
           SSSSTLYNRPTVAADSSFFAF
Sbjct: 181 SSSSTLYNRPTVAADSSFFAF 201

BLAST of Carg24482 vs. NCBI nr
Match: XP_022941970.1 (LOB domain-containing protein 15-like [Cucurbita moschata])

HSP 1 Score: 407.5 bits (1046), Expect = 6.6e-110
Identity = 200/201 (99.50%), Postives = 200/201 (99.50%), Query Frame = 0

Query: 1   MPAECPNKDGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQ 60
           MPAECPNKDGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQ
Sbjct: 1   MPAECPNKDGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQ 60

Query: 61  CPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPVYG 120
           CPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNT NSLIYEANVRLRDPVYG
Sbjct: 61  CPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYG 120

Query: 121 CMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDAS 180
           CMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDAS
Sbjct: 121 CMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDAS 180

Query: 181 SSSSTLYNRPTVAADSSFFAF 202
           SSSSTLYNRPTVAADSSFFAF
Sbjct: 181 SSSSTLYNRPTVAADSSFFAF 201

BLAST of Carg24482 vs. NCBI nr
Match: KAG6599952.1 (LOB domain-containing protein 13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 386.7 bits (992), Expect = 1.2e-103
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0

Query: 9   DGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPYFS 68
           DGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCG+QCPFAPYFS
Sbjct: 8   DGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGRQCPFAPYFS 67

Query: 69  PHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPVYGCMGAISCL 128
           PHEPHKFASVHKVFGASNVSKML EVPKNERDNTANSLIYEANVRLRDPVYGCMGAISCL
Sbjct: 68  PHEPHKFASVHKVFGASNVSKMLMEVPKNERDNTANSLIYEANVRLRDPVYGCMGAISCL 127

Query: 129 QHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDASSSSSTLYN 188
           QHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDASSSSSTLYN
Sbjct: 128 QHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDASSSSSTLYN 187

Query: 189 RPTVAADSSFFAF 202
           RPTVAADSSFFAF
Sbjct: 188 RPTVAADSSFFAF 200

BLAST of Carg24482 vs. NCBI nr
Match: XP_022988078.1 (LOB domain-containing protein 15-like [Cucurbita maxima])

HSP 1 Score: 374.8 bits (961), Expect = 4.7e-100
Identity = 187/201 (93.03%), Postives = 189/201 (94.03%), Query Frame = 0

Query: 1   MPAECPNKDGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQ 60
           MPAECP KDG+R E LGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQ
Sbjct: 1   MPAECPKKDGDRLEELGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQ 60

Query: 61  CPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPVYG 120
           CPFAPYFSPHEPHKFASVHKVFGA NVSKML EVPKNERDNTANSLIYEANVRLRDPVYG
Sbjct: 61  CPFAPYFSPHEPHKFASVHKVFGARNVSKMLMEVPKNERDNTANSLIYEANVRLRDPVYG 120

Query: 121 CMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDAS 180
           CMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSI VQPPP      PPPPHQDAS
Sbjct: 121 CMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIDVQPPP------PPPPHQDAS 180

Query: 181 SSSSTLYNRPTVAADSSFFAF 202
           S+SSTLYNRPTVAADSSFFAF
Sbjct: 181 STSSTLYNRPTVAADSSFFAF 195

BLAST of Carg24482 vs. NCBI nr
Match: XP_004146476.1 (LOB domain-containing protein 15 [Cucumis sativus] >KGN50723.1 hypothetical protein Csa_005835 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 1.8e-67
Identity = 145/221 (65.61%), Postives = 165/221 (74.66%), Query Frame = 0

Query: 7   NKDGERSEVLGKKRKRA--VSSNIPP------RHTLHGPPRTLNTITPCAACKLLRRRCG 66
           +K+ ER + + KK KR   VSSNIPP      RH+L GPP  LNTITPCAACKLLRRRC 
Sbjct: 2   SKERERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQGPPGALNTITPCAACKLLRRRCA 61

Query: 67  QQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPV 126
           Q+CPF+PYFSPHEPHKFASVHKVFGASNVSKML EV  N+R + ANSL+YEANVRLRDPV
Sbjct: 62  QECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSDNQRADAANSLVYEANVRLRDPV 121

Query: 127 YGCMGAISCLQHQVQALQATLTAVRAEILRCKYRQGN---------------------MV 186
           YGCMGAIS LQHQ+Q+LQA L AVRAEILR K+R+ N                     +V
Sbjct: 122 YGCMGAISALQHQIQSLQAELNAVRAEILRHKFREANNIIHSSPQQQHVPFLSSSSTVVV 181

Query: 187 SIAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSF 199
           S+A+ PPPPPPP LPPP H DASSSSS+LYNR TVAA + +
Sbjct: 182 SVAL-PPPPPPPPLPPPHHHDASSSSSSLYNRRTVAAAADY 221

BLAST of Carg24482 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 217.6 bits (553), Expect = 1.3e-55
Identity = 121/206 (58.74%), Postives = 143/206 (69.42%), Query Frame = 0

Query: 7   NKDGERSEVLGKKRKRAVSS----NIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCP 66
           +++ ER E +GKK KR   +        R  + GPP TLNTITPCAACKLLRRRC Q+CP
Sbjct: 2   SRERERFEEIGKKIKREADAWPHQMAGIRRPMSGPPGTLNTITPCAACKLLRRRCAQECP 61

Query: 67  FAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPVYGCM 126
           F+PYFSPHEPHKFASVHKVFGASNVSKML EVP+++R + ANSL+YEANVRLRDPVYGCM
Sbjct: 62  FSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCM 121

Query: 127 GAISCLQHQVQALQATLTAVRAEILRCKYRQG----------------NMVSIAVQPPPP 186
           GAIS LQ QVQALQA LTAVR+EIL+ K R+                 N   ++V  PPP
Sbjct: 122 GAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSNSQVAGFHNSGGVSVIAPPP 181

Query: 187 PPPELPP-PPHQDASSSSSTLYNRPT 192
             P  PP P      S SS ++++PT
Sbjct: 182 QRPTTPPQPTTAHPPSPSSCVFSQPT 207

BLAST of Carg24482 vs. ExPASy Swiss-Prot
Match: Q9AT61 (LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 SV=2)

HSP 1 Score: 200.7 bits (509), Expect = 1.6e-50
Identity = 100/169 (59.17%), Postives = 119/169 (70.41%), Query Frame = 0

Query: 31  RHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKM 90
           RH    P  TLNT+TPCAACKLLRRRC ++CPF+PYFSPHEPHKFA+VHKVFGASNVSKM
Sbjct: 37  RHVAVPPGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKM 96

Query: 91  LKEVPKNERDNTANSLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILRCK 150
           L EV +++R + ANSL+YEAN+RLRDP+YGCMGAIS LQH +Q+LQ+ LT VR EILR K
Sbjct: 97  LLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHK 156

Query: 151 YRQGN------------------------MVSIAVQPPPPPPPELPPPP 176
           Y++                          + S  + PPPPPPP  P PP
Sbjct: 157 YQEATTITSLQNNFNSTTTTSSVSCDQHALASAILLPPPPPPPPTPRPP 205

BLAST of Carg24482 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 7.2e-35
Identity = 69/103 (66.99%), Postives = 84/103 (81.55%), Query Frame = 0

Query: 45  TPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTAN 104
           +PCA+CKLLRRRC + C FAPYF P +PHKFA VHKVFGASNVSKML+E+P ++R +  N
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 105 SLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEIL 148
           SL++EAN R+RDPVYGC+GAIS LQ+QV  LQ  L   +AEIL
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEIL 109

BLAST of Carg24482 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.7e-33
Identity = 78/163 (47.85%), Postives = 100/163 (61.35%), Query Frame = 0

Query: 45  TPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTAN 104
           +PCAACK LRR+C   C FAPYF P EPHKFA+VHK+FGASNV+K+L E+  ++R++  N
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 105 SLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILR------CKYRQGNMVS 164
           SL YEA  R+RDPVYGC+GAIS LQ QV  LQ  L A  A++             GN+V 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGAPGNVVD 129

Query: 165 IAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSFFAF 202
           +  QP P P  +LPP       S +S + N+       S+  F
Sbjct: 130 LVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTF 172

BLAST of Carg24482 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-32
Identity = 72/159 (45.28%), Postives = 100/159 (62.89%), Query Frame = 0

Query: 39  RTLNTITPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNE 98
           R     +PCAACKLLRRRC Q C F+PYF   EP KFA+VH+VFGASNV+KML+E+P ++
Sbjct: 6   RKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQ 65

Query: 99  RDNTANSLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVS 158
           R +  +S++YEAN R+RDPVYGC+GAIS LQ Q+  LQA L   +AE++  + RQ     
Sbjct: 66  RGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFP 125

Query: 159 IAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSS 198
                P  P     P   Q +   +  +++   +  ++S
Sbjct: 126 GHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEAS 164

BLAST of Carg24482 vs. ExPASy TrEMBL
Match: A0A6J1FVA7 (LOB domain-containing protein 15-like OS=Cucurbita moschata OX=3662 GN=LOC111447177 PE=3 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.2e-110
Identity = 200/201 (99.50%), Postives = 200/201 (99.50%), Query Frame = 0

Query: 1   MPAECPNKDGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQ 60
           MPAECPNKDGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQ
Sbjct: 1   MPAECPNKDGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQ 60

Query: 61  CPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPVYG 120
           CPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNT NSLIYEANVRLRDPVYG
Sbjct: 61  CPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYG 120

Query: 121 CMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDAS 180
           CMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDAS
Sbjct: 121 CMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDAS 180

Query: 181 SSSSTLYNRPTVAADSSFFAF 202
           SSSSTLYNRPTVAADSSFFAF
Sbjct: 181 SSSSTLYNRPTVAADSSFFAF 201

BLAST of Carg24482 vs. ExPASy TrEMBL
Match: A0A6J1JL80 (LOB domain-containing protein 15-like OS=Cucurbita maxima OX=3661 GN=LOC111485427 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.3e-100
Identity = 187/201 (93.03%), Postives = 189/201 (94.03%), Query Frame = 0

Query: 1   MPAECPNKDGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQ 60
           MPAECP KDG+R E LGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQ
Sbjct: 1   MPAECPKKDGDRLEELGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQ 60

Query: 61  CPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPVYG 120
           CPFAPYFSPHEPHKFASVHKVFGA NVSKML EVPKNERDNTANSLIYEANVRLRDPVYG
Sbjct: 61  CPFAPYFSPHEPHKFASVHKVFGARNVSKMLMEVPKNERDNTANSLIYEANVRLRDPVYG 120

Query: 121 CMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDAS 180
           CMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSI VQPPP      PPPPHQDAS
Sbjct: 121 CMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIDVQPPP------PPPPHQDAS 180

Query: 181 SSSSTLYNRPTVAADSSFFAF 202
           S+SSTLYNRPTVAADSSFFAF
Sbjct: 181 STSSTLYNRPTVAADSSFFAF 195

BLAST of Carg24482 vs. ExPASy TrEMBL
Match: A0A0A0KM94 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G219380 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 8.8e-68
Identity = 145/221 (65.61%), Postives = 165/221 (74.66%), Query Frame = 0

Query: 7   NKDGERSEVLGKKRKRA--VSSNIPP------RHTLHGPPRTLNTITPCAACKLLRRRCG 66
           +K+ ER + + KK KR   VSSNIPP      RH+L GPP  LNTITPCAACKLLRRRC 
Sbjct: 2   SKERERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQGPPGALNTITPCAACKLLRRRCA 61

Query: 67  QQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPV 126
           Q+CPF+PYFSPHEPHKFASVHKVFGASNVSKML EV  N+R + ANSL+YEANVRLRDPV
Sbjct: 62  QECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSDNQRADAANSLVYEANVRLRDPV 121

Query: 127 YGCMGAISCLQHQVQALQATLTAVRAEILRCKYRQGN---------------------MV 186
           YGCMGAIS LQHQ+Q+LQA L AVRAEILR K+R+ N                     +V
Sbjct: 122 YGCMGAISALQHQIQSLQAELNAVRAEILRHKFREANNIIHSSPQQQHVPFLSSSSTVVV 181

Query: 187 SIAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSF 199
           S+A+ PPPPPPP LPPP H DASSSSS+LYNR TVAA + +
Sbjct: 182 SVAL-PPPPPPPPLPPPHHHDASSSSSSLYNRRTVAAAADY 221

BLAST of Carg24482 vs. ExPASy TrEMBL
Match: A0A1S3C502 (LOB domain-containing protein 15 OS=Cucumis melo OX=3656 GN=LOC103496729 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.7e-66
Identity = 143/222 (64.41%), Postives = 164/222 (73.87%), Query Frame = 0

Query: 7   NKDGERSEVLGKKRKRA--VSSNIPP------RHTLHGPPRTLNTITPCAACKLLRRRCG 66
           +K+ ER + + KK KR   VSSNIPP      RH+L G P  LNTITPCAACKLLRRRC 
Sbjct: 2   SKERERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQGSPGALNTITPCAACKLLRRRCA 61

Query: 67  QQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPV 126
           Q+CPF+PYFSPHEPHKFASVHKVFGASNVSKML EV +N+R + ANSL+YEANVRLRDPV
Sbjct: 62  QECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPV 121

Query: 127 YGCMGAISCLQHQVQALQATLTAVRAEILRCKYRQGN----------------------M 186
           YGCMGAIS LQHQ+Q+LQA L AVRAEILR K+R+ N                      +
Sbjct: 122 YGCMGAISALQHQIQSLQAELNAVRAEILRHKFREANNMIHSSPQQQHVPFLSSSSSTEV 181

Query: 187 VSIAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSF 199
           VS+A+   PPPPP LPPP H DASSSSS+LYNRPTVAA + +
Sbjct: 182 VSVAL---PPPPPPLPPPHHHDASSSSSSLYNRPTVAAAADY 220

BLAST of Carg24482 vs. ExPASy TrEMBL
Match: A0A6J1FVC7 (LOB domain-containing protein 15-like OS=Cucurbita moschata OX=3662 GN=LOC111447627 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 7.7e-64
Identity = 141/220 (64.09%), Postives = 157/220 (71.36%), Query Frame = 0

Query: 7   NKDGERSEVLGKKRKRA--VSSNIPP------RHTLHGPPRTLNTITPCAACKLLRRRCG 66
           +K+ ER + + KK KR   VSSNIPP      RH+L   P  LNTITPCAACKLLRRRC 
Sbjct: 2   SKERERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQASPGILNTITPCAACKLLRRRCA 61

Query: 67  QQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPV 126
           Q+CPF+PYFSPHEPHKFASVHKVFGASNVSKML EV +N R + ANSL+YEANVRLRDPV
Sbjct: 62  QECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENRRADAANSLVYEANVRLRDPV 121

Query: 127 YGCMGAISCLQHQVQALQATLTAVRAEILRCKYRQGN----------------------- 186
           YGCMGAIS LQHQ+QALQ  L  VRAEILR K+R+ +                       
Sbjct: 122 YGCMGAISSLQHQIQALQIELNTVRAEILRHKFREASNMIHSSPQPQQQQHASFLSSSAE 181

Query: 187 MVSIAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAAD 196
           +VS+AV PPPPP   LPPP H DASSSSS LYNRPTVA D
Sbjct: 182 VVSVAV-PPPPPSLPLPPPSHHDASSSSSPLYNRPTVATD 220

BLAST of Carg24482 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 217.6 bits (553), Expect = 9.0e-57
Identity = 121/206 (58.74%), Postives = 143/206 (69.42%), Query Frame = 0

Query: 7   NKDGERSEVLGKKRKRAVSS----NIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCP 66
           +++ ER E +GKK KR   +        R  + GPP TLNTITPCAACKLLRRRC Q+CP
Sbjct: 2   SRERERFEEIGKKIKREADAWPHQMAGIRRPMSGPPGTLNTITPCAACKLLRRRCAQECP 61

Query: 67  FAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTANSLIYEANVRLRDPVYGCM 126
           F+PYFSPHEPHKFASVHKVFGASNVSKML EVP+++R + ANSL+YEANVRLRDPVYGCM
Sbjct: 62  FSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCM 121

Query: 127 GAISCLQHQVQALQATLTAVRAEILRCKYRQG----------------NMVSIAVQPPPP 186
           GAIS LQ QVQALQA LTAVR+EIL+ K R+                 N   ++V  PPP
Sbjct: 122 GAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSNSQVAGFHNSGGVSVIAPPP 181

Query: 187 PPPELPP-PPHQDASSSSSTLYNRPT 192
             P  PP P      S SS ++++PT
Sbjct: 182 QRPTTPPQPTTAHPPSPSSCVFSQPT 207

BLAST of Carg24482 vs. TAIR 10
Match: AT2G30340.1 (LOB domain-containing protein 13 )

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-51
Identity = 100/169 (59.17%), Postives = 119/169 (70.41%), Query Frame = 0

Query: 31  RHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKM 90
           RH    P  TLNT+TPCAACKLLRRRC ++CPF+PYFSPHEPHKFA+VHKVFGASNVSKM
Sbjct: 37  RHVAVPPGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKM 96

Query: 91  LKEVPKNERDNTANSLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILRCK 150
           L EV +++R + ANSL+YEAN+RLRDP+YGCMGAIS LQH +Q+LQ+ LT VR EILR K
Sbjct: 97  LLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHK 156

Query: 151 YRQGN------------------------MVSIAVQPPPPPPPELPPPP 176
           Y++                          + S  + PPPPPPP  P PP
Sbjct: 157 YQEATTITSLQNNFNSTTTTSSVSCDQHALASAILLPPPPPPPPTPRPP 205

BLAST of Carg24482 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 142.1 bits (357), Expect = 4.8e-34
Identity = 78/163 (47.85%), Postives = 100/163 (61.35%), Query Frame = 0

Query: 45  TPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTAN 104
           +PCAACK LRR+C   C FAPYF P EPHKFA+VHK+FGASNV+K+L E+  ++R++  N
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 105 SLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILR------CKYRQGNMVS 164
           SL YEA  R+RDPVYGC+GAIS LQ QV  LQ  L A  A++             GN+V 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGAPGNVVD 129

Query: 165 IAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSFFAF 202
           +  QP P P  +LPP       S +S + N+       S+  F
Sbjct: 130 LVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTF 172

BLAST of Carg24482 vs. TAIR 10
Match: AT5G63090.3 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 142.1 bits (357), Expect = 4.8e-34
Identity = 78/163 (47.85%), Postives = 100/163 (61.35%), Query Frame = 0

Query: 45  TPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTAN 104
           +PCAACK LRR+C   C FAPYF P EPHKFA+VHK+FGASNV+K+L E+  ++R++  N
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 105 SLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILR------CKYRQGNMVS 164
           SL YEA  R+RDPVYGC+GAIS LQ QV  LQ  L A  A++             GN+V 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGAPGNVVD 129

Query: 165 IAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSFFAF 202
           +  QP P P  +LPP       S +S + N+       S+  F
Sbjct: 130 LVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTF 172

BLAST of Carg24482 vs. TAIR 10
Match: AT5G63090.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 142.1 bits (357), Expect = 4.8e-34
Identity = 78/163 (47.85%), Postives = 100/163 (61.35%), Query Frame = 0

Query: 45  TPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTAN 104
           +PCAACK LRR+C   C FAPYF P EPHKFA+VHK+FGASNV+K+L E+  ++R++  N
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 105 SLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILR------CKYRQGNMVS 164
           SL YEA  R+RDPVYGC+GAIS LQ QV  LQ  L A  A++             GN+V 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGAPGNVVD 129

Query: 165 IAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSFFAF 202
           +  QP P P  +LPP       S +S + N+       S+  F
Sbjct: 130 LVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTF 172

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7030631.12.3e-110100.00LOB domain-containing protein 13, partial [Cucurbita argyrosperma subsp. argyros... [more]
XP_022941970.16.6e-11099.50LOB domain-containing protein 15-like [Cucurbita moschata][more]
KAG6599952.11.2e-10398.96LOB domain-containing protein 13, partial [Cucurbita argyrosperma subsp. sororia... [more]
XP_022988078.14.7e-10093.03LOB domain-containing protein 15-like [Cucurbita maxima][more]
XP_004146476.11.8e-6765.61LOB domain-containing protein 15 [Cucumis sativus] >KGN50723.1 hypothetical prot... [more]
Match NameE-valueIdentityDescription
Q8L5T51.3e-5558.74LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S... [more]
Q9AT611.6e-5059.17LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 S... [more]
Q8LBW37.2e-3566.99LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S... [more]
Q9FML46.7e-3347.85Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=... [more]
Q9SHE92.0e-3245.28LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=... [more]
Match NameE-valueIdentityDescription
A0A6J1FVA73.2e-11099.50LOB domain-containing protein 15-like OS=Cucurbita moschata OX=3662 GN=LOC111447... [more]
A0A6J1JL802.3e-10093.03LOB domain-containing protein 15-like OS=Cucurbita maxima OX=3661 GN=LOC11148542... [more]
A0A0A0KM948.8e-6865.61LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G219380 PE=3 SV... [more]
A0A1S3C5021.7e-6664.41LOB domain-containing protein 15 OS=Cucumis melo OX=3656 GN=LOC103496729 PE=3 SV... [more]
A0A6J1FVC77.7e-6464.09LOB domain-containing protein 15-like OS=Cucurbita moschata OX=3662 GN=LOC111447... [more]
Match NameE-valueIdentityDescription
AT2G40470.19.0e-5758.74LOB domain-containing protein 15 [more]
AT2G30340.11.1e-5159.17LOB domain-containing protein 13 [more]
AT5G63090.24.8e-3447.85Lateral organ boundaries (LOB) domain family protein [more]
AT5G63090.34.8e-3447.85Lateral organ boundaries (LOB) domain family protein [more]
AT5G63090.14.8e-3447.85Lateral organ boundaries (LOB) domain family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 125..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR31301LOB DOMAIN-CONTAINING PROTEIN 4-RELATEDcoord: 28..154
NoneNo IPR availablePANTHERPTHR31301:SF128STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1 HOMOLOGcoord: 28..154
IPR004883Lateral organ boundaries, LOBPFAMPF03195LOBcoord: 46..142
e-value: 2.3E-39
score: 134.0
IPR004883Lateral organ boundaries, LOBPROSITEPS50891LOBcoord: 45..146
score: 25.000521

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24482-RACarg24482-RAmRNA