Carg24461 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24461
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationCarg_Chr04: 18290621 .. 18292601 (-)
RNA-Seq ExpressionCarg24461
SyntenyCarg24461
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTTATTGCGAAACAATTTGATTTCAATGTACGCGGAGTTTTCGAATTTACGAGATGCAGAGAAGGTGTTTGATGAAATGTCTGACAGAAATATTGTTACTTGGACCACCCTGGTTTCTGCATTTACTGATAGTGGAAGACCTTATGAGGCACTCCGAGTGTATGATGATATGCCGAAATCTGAGACGGCCAATGGGTACATGTATTCCGCGGTTTTGAAGGCATGTGGGCTTGTGGGTGATTTGGATCGGGGTAAGTTAATTCAAGAAAGAATATATGGGGGTAAGTTGCAGGGTGATACTATTTTGATGAATTCTCTCATGGATATGTATGTGAAATGTGGAAGCTTGAGTGATGCGGTGAAGGTTTTTCACAATATTTCACGTGCGACACAACTACTTGGAATATCATTATTTCTGGGTATAGTAAGGCCGGTTTGATGGTGGAGGCTGAAAAACTTTTTCATTGTATGCCACAGCCAAATGTTGTGTCTTGGAACAGCATGATTGCTGGCTTTGCAGATCAATGGGAGTCAGCGGGCGTTGGAATTTTGTGTCCTTGATGCACAGAAAGGGAATTAAGCTTGATGATTTCACATTTCCATGTGCTTTAAAGATCAGTGCGCTTCATGGTTATTAGTCATCGGGAAACAAATTCATTCCTATGTCACCAAATTGGGCATGGATCTAGTTGTTTTACACTGTCTGCGTCTGATTGATATGTATTTCAAATTGCAATGGCTGACTGAAGCAGTCAAGTTGTTTGACCAACACTCTTCCTTCACCCTTCCATTTCTGAGCAACCTGGCACTGTGGAACTCGATGCTCTCAGGATATGTTTATCAACAACTGTAACCAAGCTGCTTTGAATTTGATTCATACATCCATTGCTCGGTACGATATTGGACTCTTACACCTTTGGTGGTGCTTTAAAGGTTTGCATCAACTTTATTAAATCCGAGGGTTGGTTTTCAAGTACATGGTCTTATTGTCACTTGTGGTTATGAATTGGATTATGTGTTGTTGGAAGCATTGTTGTGGATCTCTATGCAAACTAGGACGCATCGACGATGCATTAGCACTGTTTCATAGGCTTCCAAGGAAAGATATCATAGCCTGGTCGGTTTGATCCTGGGGTGTGCTCAAAATGGGATTGAACTGGTTAGCTTTCTCATGTTCAAAGATATGCTCGAGTTGGCATCATTGAAATAGATCATTTTGTCATTTCAACCACTCTGGAAGTCTGCTCCAATTTAGCATCCTCTTAGAAAGTGGAAAAGCAGGATATCCATGCATTCTGTGTCAAAAGTGGGTATGAAATGGAGGGGTTCACAATAACATCCTTCTCTTGTCTGATATGTATTCAAAATGCGGTTGAAATTGAGGATGCATTAACATTGTTTGATTGTATACAACGAAAAAGACATAGTAACTTGACTGGGATCATTGTAGGATGGTGGACAAAATGGAAGGGCGGCAGAAGCTGTCAGGTTTTTTTTCATGAGATGATTCAATCAGGGCTAAATCCAAATGAAAATCACCTTTCTAGGGGTGCTTTCTGCATGTCGATATGCTGGTTTGATCGAAGAGGCACGAAACATATTTAATTCCATGAAATCTGTATATGGACTAGAGCTCATTTAGAGCATTATTGCTGCATGGTTGATCTTCTTGCTCATAGCTGGGCTACCTGAAGAAGCTGAAAAATTGATAGCAAATATGCCGTTTGAGCCAGATCAGACCACATGGCGCACTTTGCTAGGGGGCGCGTGTGGAACTCGTAACGGATACCAAGCTTATTAACAGTGTTGCTAATGCCTTCTTGAAGCTACACCAGATGACCCTTCAACGTACGTGTCACTTTCAAATGCTTATGCGTCGCTGGGGATGTGGCCATAACCTAAGCAAAGCGAGGGAGGCTGCCAAAAAGGTGGGAGTCAAAAGAGCTGGGTTAAGCTGGATTGAGGTTGCGAGTTGA

mRNA sequence

ATGTGTTTATTGCGAAACAATTTGATTTCAATGTACGCGGAGTTTTCGAATTTACGAGATGCAGAGAAGGTGTTTGATGAAATGTCTGACAGAAATATTGTTACTTGGACCACCCTGGTTTCTGCATTTACTGATAGTGGAAGACCTTATGAGGCACTCCGAGTGTATGATGATATGCCGAAATCTGAGACGGCCAATGGGTACATGTATTCCGCGGTTTTGAAGGCATGTGGGCTTGTGGGTGATTTGGATCGGGGTAAGTTAATTCAAGAAAGAATATATGGGGGTAAGTTGCAGGGTGATACTATTTTGATGAATTCTCTCATGGATATGTATGTGAAATGTGGAAGCTTGAGTGATGCGGTGAAGCCAAATGTTGTGTCTTGGAACAGCATGATTGCTGGCTTTGCAGATCAATGGGAGTCAGCGGGCGATATGTTTATCAACAACTGTAACCAAGCTGCTTTGAATTTGATTCATACATCCATTGCTCGGTACGATATTGGACTCTTACACCTTTGGTGGTGCTTTAAAGGACGCATCGACGATGCATTAGCACTGTTTCATAGGCTTCCAAGGAAAGATATCATAGCCTGGTCGGGGGCGCGTGTGGAACTCGTAACGGATACCAAGCTTATTAACAGTGTTGCTAATGCCTTCTTGAAGCTACACCAGATGACCCTTCAACGTACGTGTCACTTTCAAATGCTTATGCGTCGCTGGGGATGTGGCCATAACCTAAGCAAAGCGAGGGAGGCTGCCAAAAAGGTGGGAGTCAAAAGAGCTGGGTTAAGCTGGATTGAGGTTGCGAGTTGA

Coding sequence (CDS)

ATGTGTTTATTGCGAAACAATTTGATTTCAATGTACGCGGAGTTTTCGAATTTACGAGATGCAGAGAAGGTGTTTGATGAAATGTCTGACAGAAATATTGTTACTTGGACCACCCTGGTTTCTGCATTTACTGATAGTGGAAGACCTTATGAGGCACTCCGAGTGTATGATGATATGCCGAAATCTGAGACGGCCAATGGGTACATGTATTCCGCGGTTTTGAAGGCATGTGGGCTTGTGGGTGATTTGGATCGGGGTAAGTTAATTCAAGAAAGAATATATGGGGGTAAGTTGCAGGGTGATACTATTTTGATGAATTCTCTCATGGATATGTATGTGAAATGTGGAAGCTTGAGTGATGCGGTGAAGCCAAATGTTGTGTCTTGGAACAGCATGATTGCTGGCTTTGCAGATCAATGGGAGTCAGCGGGCGATATGTTTATCAACAACTGTAACCAAGCTGCTTTGAATTTGATTCATACATCCATTGCTCGGTACGATATTGGACTCTTACACCTTTGGTGGTGCTTTAAAGGACGCATCGACGATGCATTAGCACTGTTTCATAGGCTTCCAAGGAAAGATATCATAGCCTGGTCGGGGGCGCGTGTGGAACTCGTAACGGATACCAAGCTTATTAACAGTGTTGCTAATGCCTTCTTGAAGCTACACCAGATGACCCTTCAACGTACGTGTCACTTTCAAATGCTTATGCGTCGCTGGGGATGTGGCCATAACCTAAGCAAAGCGAGGGAGGCTGCCAAAAAGGTGGGAGTCAAAAGAGCTGGGTTAAGCTGGATTGAGGTTGCGAGTTGA

Protein sequence

MCLLRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSETANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVKPNVVSWNSMIAGFADQWESAGDMFINNCNQAALNLIHTSIARYDIGLLHLWWCFKGRIDDALALFHRLPRKDIIAWSGARVELVTDTKLINSVANAFLKLHQMTLQRTCHFQMLMRRWGCGHNLSKAREAAKKVGVKRAGLSWIEVAS
Homology
[Close]
BLAST of Carg24461 vs. NCBI nr
Match: KAG7032779.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 557.8 bits (1436), Expect = 5.3e-155
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0 

Query: 1   MCLLRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMP 60
           MCLLRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMP
Sbjct: 1   MCLLRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMP 60

Query: 61  KSETANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSD 120
           KSETANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSD
Sbjct: 61  KSETANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSD 120

Query: 121 AVKPNVVSWNSMIAGFADQWESAGDMFINNCNQAALNLIHTSIARYDIGLLHLWWCFKGR 180
           AVKPNVVSWNSMIAGFADQWESAGDMFINNCNQAALNLIHTSIARYDIGLLHLWWCFKGR
Sbjct: 121 AVKPNVVSWNSMIAGFADQWESAGDMFINNCNQAALNLIHTSIARYDIGLLHLWWCFKGR 180

Query: 181 IDDALALFHRLPRKDIIAWSGARVELVTDTKLINSVANAFLKLHQMTLQRTCHFQMLMRR 240
           IDDALALFHRLPRKDIIAWSGARVELVTDTKLINSVANAFLKLHQMTLQRTCHFQMLMRR
Sbjct: 181 IDDALALFHRLPRKDIIAWSGARVELVTDTKLINSVANAFLKLHQMTLQRTCHFQMLMRR 240

Query: 241 WGCGHNLSKAREAAKKVGVKRAGLSWIEVAS 272
           WGCGHNLSKAREAAKKVGVKRAGLSWIEVAS
Sbjct: 241 WGCGHNLSKAREAAKKVGVKRAGLSWIEVAS 271

[Close]
BLAST of Carg24461 vs. NCBI nr
Match: KAG7032773.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.8 bits (673), Expect = 1.6e-66
Identity = 177/373 (47.45%), Postives = 180/373 (48.26%), Query Frame = 0 

Query: 4   LRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE 63
           + NNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE
Sbjct: 134 IANNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE 193

Query: 64  TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 123
           TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK
Sbjct: 194 TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 253

Query: 124 --------------------------------------PNVVSWNSMIAGFADQ------ 183
                                                 PNVVSWNSMIAGFAD       
Sbjct: 254 VFHNISRATTTTWNIIISGYSKAGLMVEAEKLFHCMPQPNVVSWNSMIAGFADNGSQRAL 313

Query: 184 ------------------------------------------------------------ 202
                                                                       
Sbjct: 314 EFVSLMHRKGIKLDDFTFPCALKISALHGLLVIGKQIHSYVTKLGHGSSCFTLSALIDMY 373

[Close]
BLAST of Carg24461 vs. NCBI nr
Match: KAG7032773.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-07
Identity = 39/63 (61.90%), Postives = 40/63 (63.49%), Query Frame = 0 

Query: 209 DTKLINSVANAFLKLHQMTLQRTCHFQMLMRRWGCGHNLSKAREAAKKVGVKRAGLSWIE 268
           DTKLINSVAN  L+                   G  HNLSKAREAAKKVGVKRAGLSWIE
Sbjct: 720 DTKLINSVANGLLEATPDDPSTYVSLSNAYASLGMWHNLSKAREAAKKVGVKRAGLSWIE 779

Query: 269 VAS 272
           VAS
Sbjct: 780 VAS 782


HSP 2 Score: 263.8 bits (673), Expect = 1.6e-66
Identity = 177/373 (47.45%), Postives = 180/373 (48.26%), Query Frame = 0 

Query: 4   LRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE 63
           + NNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE
Sbjct: 129 IANNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE 188

Query: 64  TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 123
           TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK
Sbjct: 189 TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 248

Query: 124 --------------------------------------PNVVSWNSMIAGFADQ------ 183
                                                 PNVVSWNSMIAGFAD       
Sbjct: 249 VFHNISRATTTTWNIIISGYSKAGLMVEAEKLFHCMPQPNVVSWNSMIAGFADNGSQRAL 308

Query: 184 ------------------------------------------------------------ 202
                                                                       
Sbjct: 309 EFVSLMHRKGIKLDDFTFPCALKISALHGLLVIGKQIHSYVTKLGHGSSCFTLSALIDMY 368

[Close]
BLAST of Carg24461 vs. NCBI nr
Match: KAG6602075.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-06
Identity = 38/63 (60.32%), Postives = 39/63 (61.90%), Query Frame = 0 

Query: 209 DTKLINSVANAFLKLHQMTLQRTCHFQMLMRRWGCGHNLSKAREAAKKVGVKRAGLSWIE 268
           D KLINSVAN  L+                   G  HNLSKAREAAKKVGVKRAGLSWIE
Sbjct: 715 DIKLINSVANGLLEAIPDDPSTYVSLSNAYASLGMWHNLSKAREAAKKVGVKRAGLSWIE 774

Query: 269 VAS 272
           VAS
Sbjct: 775 VAS 777


HSP 2 Score: 261.9 bits (668), Expect = 6.0e-66
Identity = 176/373 (47.18%), Postives = 180/373 (48.26%), Query Frame = 0 

Query: 4   LRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE 63
           + NNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE
Sbjct: 40  IANNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE 99

Query: 64  TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 123
           TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK
Sbjct: 100 TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 159

Query: 124 --------------------------------------PNVVSWNSMIAGFADQ------ 183
                                                 PNVVSWNSMIAGFAD       
Sbjct: 160 VFHNISRATTTTWNIIISGYSKAGLMVEAEKLFHCMPQPNVVSWNSMIAGFADNGSQRAL 219

Query: 184 ------------------------------------------------------------ 202
                                                                       
Sbjct: 220 EFVSLMHRKGIKLDDFTFPCALKISALHGLLVIGKQIHSYVTKLGHGSSCFTLSALIDMY 279

[Close]
BLAST of Carg24461 vs. NCBI nr
Match: XP_022964409.1 (pentatricopeptide repeat-containing protein At4g08210 [Cucurbita moschata])

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-07
Identity = 39/63 (61.90%), Postives = 40/63 (63.49%), Query Frame = 0 

Query: 209 DTKLINSVANAFLKLHQMTLQRTCHFQMLMRRWGCGHNLSKAREAAKKVGVKRAGLSWIE 268
           DTKLINSVAN  L+                   G  HNLSKAREAAKKVGVKRAGLSWIE
Sbjct: 626 DTKLINSVANGLLEATPDDPSTYVSLSNAYASLGMWHNLSKAREAAKKVGVKRAGLSWIE 685

Query: 269 VAS 272
           VAS
Sbjct: 686 VAS 688


HSP 2 Score: 250.8 bits (639), Expect = 1.4e-62
Identity = 133/193 (68.91%), Postives = 139/193 (72.02%), Query Frame = 0 

Query: 4   LRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE 63
           + NNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTD GRPYEALRVYDDMPKSE
Sbjct: 40  IANNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDCGRPYEALRVYDDMPKSE 99

Query: 64  TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 123
           TANGYMYSAVLKACGLVGDLDRGKLIQE IYGGKLQGDTILMNSLMDMYVKCGSLSDAVK
Sbjct: 100 TANGYMYSAVLKACGLVGDLDRGKLIQEGIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 159

Query: 124 --------------------------------------PNVVSWNSMIAGFADQWESAGD 159
                                                 PNVVSWNSMIAGFAD       
Sbjct: 160 VFHNISRATTTTWNIIISGYSKAGLMVEAEKLFHCMPQPNVVSWNSMIAGFADNGSQRAL 219

[Close]
BLAST of Carg24461 vs. ExPASy Swiss-Prot
Match: Q9SUF9 (Pentatricopeptide repeat-containing protein At4g08210 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E100 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.9e-39
Identity = 86/206 (41.75%), Postives = 122/206 (59.22%), Query Frame = 0 

Query: 4   LRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDM--PK 63
           + NN+ISMY +F  L DA KVFDEMS+RNIVTWTT+VS +T  G+P +A+ +Y  M   +
Sbjct: 42  IANNVISMYVDFRLLSDAHKVFDEMSERNIVTWTTMVSGYTSDGKPNKAIELYRRMLDSE 101

Query: 64  SETANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDA 123
            E AN +MYSAVLKACGLVGD+  G L+ ERI    L+GD +LMNS++DMYVK G L +A
Sbjct: 102 EEAANEFMYSAVLKACGLVGDIQLGILVYERIGKENLRGDVVLMNSVVDMYVKNGRLIEA 161

Query: 124 -------VKPNVVSWNSMIAGFADQWESAGDMFINNCNQAALNLIHTSIARYDIGLLHLW 183
                  ++P+  SWN++I+G+                                      
Sbjct: 162 NSSFKEILRPSSTSWNTLISGY-------------------------------------- 208

Query: 184 WCFKGRIDDALALFHRLPRKDIIAWS 201
            C  G +D+A+ LFHR+P+ ++++W+
Sbjct: 222 -CKAGLMDEAVTLFHRMPQPNVVSWN 208

[Close]
BLAST of Carg24461 vs. ExPASy Swiss-Prot
Match: Q9ZUT4 (Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E50 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.8e-20
Identity = 54/142 (38.03%), Postives = 83/142 (58.45%), Query Frame = 0 

Query: 4   LRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE 63
           L ++L+ +Y +   + +A KVF+EM +RN+V+WT ++S F    R    L++Y  M KS 
Sbjct: 157 LGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKST 216

Query: 64  T-ANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAV 123
           +  N Y ++A+L AC   G L +G+ +  +     L+    + NSL+ MY KCG L DA 
Sbjct: 217 SDPNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAF 276

Query: 124 K-------PNVVSWNSMIAGFA 138
           +        +VVSWNSMIAG+A
Sbjct: 277 RIFDQFSNKDVVSWNSMIAGYA 298

[Close]
BLAST of Carg24461 vs. ExPASy Swiss-Prot
Match: Q9SR82 (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-19
Identity = 51/139 (36.69%), Postives = 85/139 (61.15%), Query Frame = 0 

Query: 7   NLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPK-SETA 66
           +L+S+Y+    L DA K+FDE+ DR++VTWT L S +T SGR  EA+ ++  M +     
Sbjct: 151 SLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKP 210

Query: 67  NGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDA---- 126
           + Y    VL AC  VGDLD G+ I + +   ++Q ++ +  +L+++Y KCG +  A    
Sbjct: 211 DSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVF 270

Query: 127 ---VKPNVVSWNSMIAGFA 138
              V+ ++V+W++MI G+A
Sbjct: 271 DSMVEKDIVTWSTMIQGYA 289

[Close]
BLAST of Carg24461 vs. ExPASy Swiss-Prot
Match: Q9SN39 (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DOT4 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-18
Identity = 50/141 (35.46%), Postives = 86/141 (60.99%), Query Frame = 0 

Query: 6   NNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE-T 65
           N L+ MY++  +L  A+ VF EMSDR++V++T++++ +   G   EA++++++M +   +
Sbjct: 335 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 66  ANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDA--- 125
            + Y  +AVL  C     LD GK + E I    L  D  + N+LMDMY KCGS+ +A   
Sbjct: 395 PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELV 454

Query: 126 -----VKPNVVSWNSMIAGFA 138
                VK +++SWN++I G++
Sbjct: 455 FSEMRVK-DIISWNTIIGGYS 474

[Close]
BLAST of Carg24461 vs. ExPASy Swiss-Prot
Match: Q8VYH0 (Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H1 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.7e-18
Identity = 48/143 (33.57%), Postives = 79/143 (55.24%), Query Frame = 0 

Query: 6   NNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSETA 65
           N+L+  Y +   +  A K+FDEM + N+V+WT+++S + D G+P  AL ++  M +    
Sbjct: 68  NHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMHEDRPV 127

Query: 66  --NGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 125
             N Y +++V KAC  + +   GK I  R+    L+ + ++ +SL+DMY KC  +  A +
Sbjct: 128 PPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETARR 187

Query: 126 ---------PNVVSWNSMIAGFA 138
                     NVVSW SMI  +A
Sbjct: 188 VFDSMIGYGRNVVSWTSMITAYA 210

[Close]
BLAST of Carg24461 vs. ExPASy TrEMBL
Match: A0A6J1HN25 (pentatricopeptide repeat-containing protein At4g08210 OS=Cucurbita moschata OX=3662 GN=LOC111464431 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.9e-66
Identity = 176/373 (47.18%), Postives = 180/373 (48.26%), Query Frame = 0 

Query: 4   LRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE 63
           + NNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE
Sbjct: 40  IANNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE 99

Query: 64  TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 123
           TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK
Sbjct: 100 TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 159

Query: 124 --------------------------------------PNVVSWNSMIAGFADQ------ 183
                                                 PNVVSWNSMIAGFAD       
Sbjct: 160 VFHNISRATTTTWNIIISGYSKAGLMVEAEKLFHCMPQPNVVSWNSMIAGFADNGSQRAL 219

Query: 184 ------------------------------------------------------------ 202
                                                                       
Sbjct: 220 EFVSLMHRKGIKLDDFTFPCALKISALHGLLVIGKQIHSYVTKLGHGSSCFTLSALIDMY 279

[Close]
BLAST of Carg24461 vs. ExPASy TrEMBL
Match: A0A6J1HN25 (pentatricopeptide repeat-containing protein At4g08210 OS=Cucurbita moschata OX=3662 GN=LOC111464431 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-07
Identity = 39/63 (61.90%), Postives = 40/63 (63.49%), Query Frame = 0 

Query: 209 DTKLINSVANAFLKLHQMTLQRTCHFQMLMRRWGCGHNLSKAREAAKKVGVKRAGLSWIE 268
           DTKLINSVAN  L+                   G  HNLSKAREAAKKVGVKRAGLSWIE
Sbjct: 626 DTKLINSVANGLLEATPDDPSTYVSLSNAYASLGMWHNLSKAREAAKKVGVKRAGLSWIE 685

Query: 269 VAS 272
           VAS
Sbjct: 686 VAS 688


HSP 2 Score: 250.8 bits (639), Expect = 6.7e-63
Identity = 133/193 (68.91%), Postives = 139/193 (72.02%), Query Frame = 0 

Query: 4   LRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE 63
           + NNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTD GRPYEALRVYDDMPKSE
Sbjct: 40  IANNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDCGRPYEALRVYDDMPKSE 99

Query: 64  TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 123
           TANGYMYSAVLKACGLVGDLDRGKLIQE IYGGKLQGDTILMNSLMDMYVKCGSLSDAVK
Sbjct: 100 TANGYMYSAVLKACGLVGDLDRGKLIQEGIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 159

Query: 124 --------------------------------------PNVVSWNSMIAGFADQWESAGD 159
                                                 PNVVSWNSMIAGFAD       
Sbjct: 160 VFHNISRATTTTWNIIISGYSKAGLMVEAEKLFHCMPQPNVVSWNSMIAGFADNGSQRAL 219

[Close]
BLAST of Carg24461 vs. ExPASy TrEMBL
Match: A0A6J1JS73 (pentatricopeptide repeat-containing protein At4g08210 OS=Cucurbita maxima OX=3661 GN=LOC111487078 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-07
Identity = 39/63 (61.90%), Postives = 40/63 (63.49%), Query Frame = 0 

Query: 209 DTKLINSVANAFLKLHQMTLQRTCHFQMLMRRWGCGHNLSKAREAAKKVGVKRAGLSWIE 268
           DTKLINSVAN  L+                   G  HNLSKAREAAKKVGVKRAGLSWIE
Sbjct: 626 DTKLINSVANGLLEATPDDPSTYVSLSNAYASLGMWHNLSKAREAAKKVGVKRAGLSWIE 685

Query: 269 VAS 272
           VAS
Sbjct: 686 VAS 688


HSP 2 Score: 53.5 bits (127), Expect = 1.6e-03
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0 

Query: 179 GRIDDALALFHRLPRKDIIAWSG 202
           GRIDDALALFHRLPRKDIIAWSG
Sbjct: 390 GRIDDALALFHRLPRKDIIAWSG 412


HSP 3 Score: 232.3 bits (591), Expect = 2.5e-57
Identity = 124/193 (64.25%), Postives = 131/193 (67.88%), Query Frame = 0 

Query: 4   LRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE 63
           L NNL+SMYAEF NLRDAEKVFDEM DRNIVTWTT+VSAFTDSGRPYEALRVY+DMPKSE
Sbjct: 40  LANNLVSMYAEFLNLRDAEKVFDEMPDRNIVTWTTMVSAFTDSGRPYEALRVYNDMPKSE 99

Query: 64  TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 123
             NGYMYSAVLKACGLVGDLD GKLIQERIYG KLQ D ILMNSLMDM VKCGSL+DAVK
Sbjct: 100 PXNGYMYSAVLKACGLVGDLDLGKLIQERIYGAKLQADAILMNSLMDMXVKCGSLNDAVK 159

Query: 124 --------------------------------------PNVVSWNSMIAGFADQWESAGD 159
                                                 PNVVSWNSMIAGFAD       
Sbjct: 160 VFHNISCATTTSWNIIISGYSKAGLMLEAEKLFHCMPQPNVVSWNSMIAGFADNGSQRAL 219

[Close]
BLAST of Carg24461 vs. ExPASy TrEMBL
Match: A0A0A0KRG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G375260 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 5.1e-55
Identity = 118/193 (61.14%), Postives = 132/193 (68.39%), Query Frame = 0 

Query: 4   LRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE 63
           L NNLISMYAEF N+RDAEKVFDEM+DRNIVTWTT+VSAFTD GRPYEA+R+Y+DMPKSE
Sbjct: 40  LANNLISMYAEFFNVRDAEKVFDEMTDRNIVTWTTMVSAFTDGGRPYEAIRLYNDMPKSE 99

Query: 64  TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 123
           T NGYMYSAVLKACG VGDL  GKLIQERIY  KLQ DTILMNSLMDM+VKCGSL+DAV+
Sbjct: 100 TPNGYMYSAVLKACGFVGDLGLGKLIQERIYEDKLQADTILMNSLMDMFVKCGSLNDAVE 159

Query: 124 --------------------------------------PNVVSWNSMIAGFADQWESAGD 159
                                                 PNVVSWNSMIAGFAD       
Sbjct: 160 VFHNISRATTTTWNIIVSGYSKAGLMVEAEKLFHCMPHPNVVSWNSMIAGFADNGSQRAL 219

[Close]
BLAST of Carg24461 vs. ExPASy TrEMBL
Match: A0A5A7TZR3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00550 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 117/193 (60.62%), Postives = 133/193 (68.91%), Query Frame = 0 

Query: 4   LRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE 63
           L NNLISMYAEF N+RDAEKVFDEM+DRNIVTWT++VSAFTD GRPYEA+R+Y+DMPKSE
Sbjct: 40  LANNLISMYAEFYNVRDAEKVFDEMTDRNIVTWTSMVSAFTDGGRPYEAIRLYNDMPKSE 99

Query: 64  TANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 123
           T NGYMYSAVLKACG VGDL  GKLIQERIY  KLQ DTILMNSLMDM+VKCGSL+DAV+
Sbjct: 100 TPNGYMYSAVLKACGFVGDLGLGKLIQERIYEDKLQADTILMNSLMDMFVKCGSLNDAVE 159

Query: 124 --------------------------------------PNVVSWNSMIAGFADQWESAGD 159
                                                 PNVVSWNSMIAGFAD       
Sbjct: 160 VFHNISRATTTTWNIIVSGYSKAGLMVEAEKLFHCMPHPNVVSWNSMIAGFADNGSQRAL 219

[Close]
BLAST of Carg24461 vs. TAIR 10
Match: AT4G08210.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 163.7 bits (413), Expect = 2.1e-40
Identity = 86/206 (41.75%), Postives = 122/206 (59.22%), Query Frame = 0 

Query: 4   LRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDM--PK 63
           + NN+ISMY +F  L DA KVFDEMS+RNIVTWTT+VS +T  G+P +A+ +Y  M   +
Sbjct: 42  IANNVISMYVDFRLLSDAHKVFDEMSERNIVTWTTMVSGYTSDGKPNKAIELYRRMLDSE 101

Query: 64  SETANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDA 123
            E AN +MYSAVLKACGLVGD+  G L+ ERI    L+GD +LMNS++DMYVK G L +A
Sbjct: 102 EEAANEFMYSAVLKACGLVGDIQLGILVYERIGKENLRGDVVLMNSVVDMYVKNGRLIEA 161

Query: 124 -------VKPNVVSWNSMIAGFADQWESAGDMFINNCNQAALNLIHTSIARYDIGLLHLW 183
                  ++P+  SWN++I+G+                                      
Sbjct: 162 NSSFKEILRPSSTSWNTLISGY-------------------------------------- 208

Query: 184 WCFKGRIDDALALFHRLPRKDIIAWS 201
            C  G +D+A+ LFHR+P+ ++++W+
Sbjct: 222 -CKAGLMDEAVTLFHRMPQPNVVSWN 208

[Close]
BLAST of Carg24461 vs. TAIR 10
Match: AT2G37320.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 99.4 bits (246), Expect = 4.8e-21
Identity = 54/142 (38.03%), Postives = 83/142 (58.45%), Query Frame = 0 

Query: 4   LRNNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE 63
           L ++L+ +Y +   + +A KVF+EM +RN+V+WT ++S F    R    L++Y  M KS 
Sbjct: 157 LGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKST 216

Query: 64  T-ANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAV 123
           +  N Y ++A+L AC   G L +G+ +  +     L+    + NSL+ MY KCG L DA 
Sbjct: 217 SDPNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAF 276

Query: 124 K-------PNVVSWNSMIAGFA 138
           +        +VVSWNSMIAG+A
Sbjct: 277 RIFDQFSNKDVVSWNSMIAGYA 298

[Close]
BLAST of Carg24461 vs. TAIR 10
Match: AT3G08820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 8.2e-21
Identity = 51/139 (36.69%), Postives = 85/139 (61.15%), Query Frame = 0 

Query: 7   NLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPK-SETA 66
           +L+S+Y+    L DA K+FDE+ DR++VTWT L S +T SGR  EA+ ++  M +     
Sbjct: 151 SLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKP 210

Query: 67  NGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDA---- 126
           + Y    VL AC  VGDLD G+ I + +   ++Q ++ +  +L+++Y KCG +  A    
Sbjct: 211 DSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVF 270

Query: 127 ---VKPNVVSWNSMIAGFA 138
              V+ ++V+W++MI G+A
Sbjct: 271 DSMVEKDIVTWSTMIQGYA 289

[Close]
BLAST of Carg24461 vs. TAIR 10
Match: AT4G18750.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 9.1e-20
Identity = 50/141 (35.46%), Postives = 86/141 (60.99%), Query Frame = 0 

Query: 6   NNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSE-T 65
           N L+ MY++  +L  A+ VF EMSDR++V++T++++ +   G   EA++++++M +   +
Sbjct: 335 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 66  ANGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDA--- 125
            + Y  +AVL  C     LD GK + E I    L  D  + N+LMDMY KCGS+ +A   
Sbjct: 395 PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELV 454

Query: 126 -----VKPNVVSWNSMIAGFA 138
                VK +++SWN++I G++
Sbjct: 455 FSEMRVK-DIISWNTIIGGYS 474

[Close]
BLAST of Carg24461 vs. TAIR 10
Match: AT4G15720.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-19
Identity = 48/143 (33.57%), Postives = 79/143 (55.24%), Query Frame = 0 

Query: 6   NNLISMYAEFSNLRDAEKVFDEMSDRNIVTWTTLVSAFTDSGRPYEALRVYDDMPKSETA 65
           N+L+  Y +   +  A K+FDEM + N+V+WT+++S + D G+P  AL ++  M +    
Sbjct: 68  NHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMHEDRPV 127

Query: 66  --NGYMYSAVLKACGLVGDLDRGKLIQERIYGGKLQGDTILMNSLMDMYVKCGSLSDAVK 125
             N Y +++V KAC  + +   GK I  R+    L+ + ++ +SL+DMY KC  +  A +
Sbjct: 128 PPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETARR 187

Query: 126 ---------PNVVSWNSMIAGFA 138
                     NVVSW SMI  +A
Sbjct: 188 VFDSMIGYGRNVVSWTSMITAYA 210

The following BLAST results are available for this feature:
BLAST of Carg24461 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032779.15.3e-155100.00Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG7032773.11.6e-6647.45Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG7032773.12.8e-0761.90Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG6602075.11.8e-0660.32Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022964409.12.8e-0761.90pentatricopeptide repeat-containing protein At4g08210 [Cucurbita moschata][more]

Pages

BLAST of Carg24461 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SUF92.9e-3941.75Pentatricopeptide repeat-containing protein At4g08210 OS=Arabidopsis thaliana OX... [more]
Q9ZUT46.8e-2038.03Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana OX... [more]
Q9SR821.2e-1936.69Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis th... [more]
Q9SN391.3e-1835.46Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis t... [more]
Q8VYH01.7e-1833.57Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg24461 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HN252.9e-6647.18pentatricopeptide repeat-containing protein At4g08210 OS=Cucurbita moschata OX=3... [more]
A0A6J1HN251.4e-0761.90pentatricopeptide repeat-containing protein At4g08210 OS=Cucurbita moschata OX=3... [more]
A0A6J1JS731.4e-0761.90pentatricopeptide repeat-containing protein At4g08210 OS=Cucurbita maxima OX=366... [more]
A0A0A0KRG35.1e-5561.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G375260 PE=4 SV=1[more]
A0A5A7TZR31.1e-5460.62Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of Carg24461 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G08210.12.1e-4041.75Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT2G37320.14.8e-2138.03Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G08820.18.2e-2136.69Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G18750.19.1e-2035.46Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G15720.11.2e-1933.57Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 105..123
e-value: 0.54
score: 10.6
coord: 34..62
e-value: 1.9E-5
score: 24.6
coord: 6..33
e-value: 6.7E-4
score: 19.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 6..34
e-value: 5.8E-4
score: 17.9
coord: 34..62
e-value: 5.0E-5
score: 21.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 32..62
score: 10.172144
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 2..123
e-value: 1.5E-20
score: 75.9
NoneNo IPR availablePANTHERPTHR47929FAMILY NOT NAMEDcoord: 3..138

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24461-RACarg24461-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding