Carg24427 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24427
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Replication factor C subunit like
Location	Carg_Chr04: 18466410 .. 18471282 (+)
RNA-Seq Expression	Carg24427
Synteny	Carg24427

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAAGTAATTACTGTCATTGATATCGACGACGACGATGACAACAACGAAGCTGAAAAGCGAGTCAAGGGCAACAATGTCGCCAATCCTGCCGCCGTACCTGACGGCAAAGCGATACCCTGGGTCGAGAAGTTTCGGCCTAAGTCTCTTGACGACGTTGCTGCTCACCGCGACATTGTTGACACCAGTAAGACTTGTACACCATTAGACTGCTCGATACATTAGGGTTCTCGCTTTCAACTGTCAATTTTACTTCTATTTTCACTTGCAATATGGAAGTGGTATCTCGTTAGTAGTTGAAAGACTAGTTTAAAACAGCGAATGATTGTGATCATGAGTTTATGTGTTTGTCGATTAATTTCAATGTTTTGCGTAATTCATGTTTCATATTTCAAATTTTCATGTTCTTATTTTTGTTGTCTCCTGGTTTTGTTTCTGTTATGTTGGATGTTAATTAGTTGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGGAAGACATCAACCATTCTAGCAGTTGCCCGCAAGCTTTATGGAGCAAACTACCACAAGATGATACTCGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAGCAGATTCAGAATTTTGTCAGTACTCAAAGCTTTTCATTTGGGTAATGATTAATTATATCATTCGCTTATCTGAATTCAAAAACATACTCTCTGTATCATTGGAATTATGTTGAAGAGGTTGGGTGTGGTATATTACATTTAGCCATTGATGGGTGAACAAAGCATCAAACCATTTCATTTTTAATCATTTGATGGGCCATCGTTGCAATTCATGTATACAGCAGGGTAGAACTGTGATTTGAAGTATTCATTGACAATTCGTTAGTATCGAGCTGATTTCGTATTAATATGAAATGTGTTTTTCACATTTTGATACAATTTCTATAGAAATACAACATTTTTATTTAGCTTAAACATCAAAATTTGCAGGGTTAAATCATCTGTAAAATTGGTACTTCTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGGTTTATCTCATTCGTTGCTACTCTCATTTTATCCTCTCCATCTTTCATTGAGCTACAGTTCCCTATACGAATTGTTGCTATATTTGTCCTTCGTGCAGTAATTGAGAAATATACAAAAGGTACAAGGTTTACTCTTATCTGTAATCACGTAAATAAGATTATTCCCGCTTTACAATCAAGATGTACCCGCTTCCGATTTGCTCCCCTCGATAACTTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTATGAGGTCTTCCAGTTTCACTTATAATACACACATTAGTCTCGTTATTGCTTACATTTATGTCTGACTAGCAAACGTTCAAAGTCTATGATGGCTGGTATCTACGGTATATTGATGTGTAAGGGTAATTTCCTTCATTTTAATTCTGATATATAACTCAATTTGTCATTCTAGCTTTGTAAATATTTGGGGTAGAATACACAATCTCTCTCCAAATCCTGCTGACCATGGAAATTTTAAGTATTCATCGAACTCTCTCTTATTGTTCAATGGACATGTAATGGCTATTACACTTGAAGTTTGTATGGGACATACTGTTCTCCTTTTTGTCTAAGCTATCTTTACATTTCCATAAAATTTTCGCTTTTAAAAAGAACATGTTATTTATTGAATCTAGATGGTTTTTGGAGGTAATGTTAGTTGGATCCTATATATTTTCGAACATGTAACTCTATTATGAACATATGTCTAATTCTCTATACCTGAATGGTAATTAGGCTGGACGTCTCCGAGAGTGGATTAGCAGCCCTTGTTCGACTTTGTGGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGGTAATATAGTTTTTATTTGGCTTTGTTTTCTGCATTTTGCGGTATTCAGTAGCTATTAGGCCAGAATAAAGTGATGGCTTAATTTTATGAGAATTAAGGATATGAAAAGATAAATGGGAAACATATCATGTCAGTAGTAAAAGATGTAGGCAAGTTGTTCTCATCTATTAAAGATTAAGAATATGATATCCTGGAACTCAATCACTGTTATAGTGGTTTTTTGCCTCCTTTTTTCACCCTTGCCTTGTTAACTAGTAAAAGTAGCGGACCGTATGGATACACGGTCATTATTACTTAAAAATTTGGAGGAATTGATAAGAAAAACCTAGAGAAAAGGCTTAAGCAACTATAACTACAAGTCATCCCATCTCCTTGGTGCTTTTTTTTTAATGGTTAGATTCAATAGTTCAACTTTATTTAGTGTTCTCAACATTTCCATGCGTAAAGGTTTCACAGTATTGAGCTCTGACTTCAAATGCAACAAAAGAAAAAGAAAGTAATTCAAACAATTGGATTCATGATGCTTTATGACCCATGGTTCAGTTACCTTCTGTTAGTACTACGAGAAATGATCAAAGTGTGGATAATAAAGGCTAAGCACTCTTAAATTGCTGCACACCAATCTGCATATTTTGGAATTTGGATCACAATGCTCCCTTAAATCAACATGCACTGGTGCATGTCAACATTCTTTTATAACTCACACATCGATTAAAGACATTTACATATGTTATTTAGTTGTTACTTTGTGATCCTAATGATGCTTTTTTATGCAGTCAACGCATATGGCTTCTCAGCATATTACTGACGAGGCTGTATACCTATGTACAGGAAATCCAATGCCCAAAGACATAGAACAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGAGTAATTGATTTTCTCTGGAGTTTTCCATGAATTTTGATGTGGTTTTCCAGATTTTTTTCCTTTAATTCCTATCAATTCCATGTTCAGGAATATCTGAAATAAAGACCAGAAAAGGATTAGCTTTGGTTGATATAGTGAGAGAAGTCACTATGTAAGTGCTTTACATCATTTTGCATGATTTCTGAGTGATGATATTTACTTGACTTCCCCAACTGTTCAATTCATGTAGGTTTGTTTTTAAGATCAAGATGCCATCGGATGTCAGAGTTCAGTTGATTAATGATCTGGCTGACATAGAGTACGCATCAATCTCCTTATTTAGTTTCTTGTCAAGTTTTATTATTTTATTCTGTAAAAATATGTATGATCTGCAAAATAACGACCACCATACACGCTTCATCTTAATTGTTACGCATAAATCGGAAGGCTTAAAAAATTGGGGGTTTCTTTTTCGTGGATAGGGAGGAGCTTACTAAGTTGAACGAGTGACATATAGGTAGAAAAGGACTAGAGAATCTTTGTTTTTCTGATCTAACTTGTAAAACATTCTTACTCATCTATTTCTACTTTTGTAAGCTAAAAGTTCTGTCATATTCTTCAGTTCAATGAATAGAATTATGCTGCAGTTTTCATTATGGATAAAGATAAAAGGACATTCTATCCTATGATTTGCATCGTTTGATCTTATCTTTTCAATTTGAAAAACTGGTCAACTGCTAGACCTAACACAATTCTTTCTAACAAACCTTTGATCACGAATTAGTGATCAATCCTTCAGTTGAAAAAGACTGTCTAATTAAGCATATACTTCCATTGCTTGTAAGCTGGAACTTCTCGTGGCTGTACAATGAATCTATCCCACTTATCAAAAGAATAGAATAGGCTTTTAAGTCTTCGAAGTCCCAAAGACGATAACGAAATTTCATGACATTCTTTTTTTCTAAGTATGAAGAGGGAACATGTGACTTCTTATGTAATAACTCCACCCAAATCCATTGTTAGCAAATATTGTTCTTTTTGTACTTTTCTTTTTAGACTTTTCCTCAAGGTTGTTAAAATGCGTATGTTAGGGAGAAATTTTCACACCCTTGTAAAGAATGTTTCATTCTCCTCCCCAATCGATGTGGGATCTCACAATCCACCCCCTTCAGGGTCCAGTGTCCTCGCTGGCACTCGTTTCCTTCTCCAATCGATGTGAGACCCCCCCAATCGACCCCCTTCGAGGCCCAGCGCCCTTGCTAGCACACTACCTCATGTCCACCTCCCTTCGGGGCTTAGTCTCCTCACTGGCACATCGCTCGGTGTCTAGCTCTGATACCATTTGTAACAGCCCAAGTCTACTATTAAGAGATATTGTCCTCTTTGGGTTTTCCCTTTTGGGCTTCCCCTCAAGGTTTTTTAAAACGCGTCTGCTAGGGAAAGGTTTCCACACCCTTGTGAACAATGTTTCATTCTCCTCCCCAACCAATATAGGATCTCACATCTTAACTCAATCAAATTAAAAAAACAGACTTAGAGAGGACACATATCAAGTTTTTTGATCTGTTACTTAAATTAACCAGTTTGACCGGTTGCTGTTTGTAGGTACAGAATGAGTTTTGGATGCAACGACAAATTACAACTCGGATTGCTCATCTCATCGTTTACTCAAGCCAGATATGCACTCGTTGGTGCTGCAGATTCGCTCACCAACCATCTGTCGCACGCACCCGTGTGCATCGATTAGGTACGAAACTGTAGAGAATGTGAACATATGCCTCATTTGACCTCCAGCTTTTGATGCAAAAAGTCAGTGCTGACATTGATATGTTGTGTGTATAGGAAGGAAATGCAATATTTGAAAGTCTACAAGAAAAAGGTTAGATAACATTTAAAGTATTTCTTTGTTCTAGTTGGACTGGTTCACTTCCAATATTTCGGCACATGCTTATCTTTAATAGTAGTTTATCTACAACCACCAATCTTTTGTTCTCCCTGACATTGTTTATTGCATTATTGAACTTTAGAATATATATATTTTTCCTCCTTTGAATTTTACTTTTA

mRNA sequence

ATGTTGGAAGTAATTACTGTCATTGATATCGACGACGACGATGACAACAACGAAGCTGAAAAGCGAGTCAAGGGCAACAATGTCGCCAATCCTGCCGCCGTACCTGACGGCAAAGCGATACCCTGGGTCGAGAAGTTTCGGCCTAAGTCTCTTGACGACGTTGCTGCTCACCGCGACATTGTTGACACCATTGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGGAAGACATCAACCATTCTAGCAGTTGCCCGCAAGCTTTATGGAGCAAACTACCACAAGATGATACTCGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAGCAGATTCAGAATTTTGTCAGTACTCAAAGCTTTTCATTTGGGGTTAAATCATCTGTAAAATTGGTACTTCTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAATTGAGAAATATACAAAAGGTACAAGGTTTACTCTTATCTGTAATCACGTAAATAAGATTATTCCCGCTTTACAATCAAGATGTACCCGCTTCCGATTTGCTCCCCTCGATAACTTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGCTGGACGTCTCCGAGAGTGGATTAGCAGCCCTTGTTCGACTTTGTGGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCTCAGCATATTACTGACGAGGCTGTATACCTATGTACAGGAAATCCAATGCCCAAAGACATAGAACAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGAGAATATCTGAAATAAAGACCAGAAAAGGATTAGCTTTGGTTGATATAGTGAGAGAAGTCACTATGTTTGTTTTTAAGATCAAGATGCCATCGGATGTCAGAGTTCAGTTGATTAATGATCTGGCTGACATAGAGTACAGAATGAGTTTTGGATGCAACGACAAATTACAACTCGGATTGCTCATCTCATCGTTTACTCAAGCCAGATATGCACTCGTTGGTGCTGCAGATTCGCTCACCAACCATCTGTCGCACGCACCCGTGTGCATCGATTAGGTACGAAACTGTAGAGAATGTGAACATATGCCTCATTTGACCTCCAGCTTTTGATGCAAAAAGTCAGTGCTGACATTGATATGTTGTGTGTATAGGAAGGAAATGCAATATTTGAAAGTCTACAAGAAAAAGGTTAGATAACATTTAAAGTATTTCTTTGTTCTAGTTGGACTGGTTCACTTCCAATATTTCGGCACATGCTTATCTTTAATAGTAGTTTATCTACAACCACCAATCTTTTGTTCTCCCTGACATTGTTTATTGCATTATTGAACTTTAGAATATATATATTTTTCCTCCTTTGAATTTTACTTTTA

Coding sequence (CDS)

ATGTTGGAAGTAATTACTGTCATTGATATCGACGACGACGATGACAACAACGAAGCTGAAAAGCGAGTCAAGGGCAACAATGTCGCCAATCCTGCCGCCGTACCTGACGGCAAAGCGATACCCTGGGTCGAGAAGTTTCGGCCTAAGTCTCTTGACGACGTTGCTGCTCACCGCGACATTGTTGACACCATTGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGGAAGACATCAACCATTCTAGCAGTTGCCCGCAAGCTTTATGGAGCAAACTACCACAAGATGATACTCGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAGCAGATTCAGAATTTTGTCAGTACTCAAAGCTTTTCATTTGGGGTTAAATCATCTGTAAAATTGGTACTTCTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAATTGAGAAATATACAAAAGGTACAAGGTTTACTCTTATCTGTAATCACGTAAATAAGATTATTCCCGCTTTACAATCAAGATGTACCCGCTTCCGATTTGCTCCCCTCGATAACTTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGCTGGACGTCTCCGAGAGTGGATTAGCAGCCCTTGTTCGACTTTGTGGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCTCAGCATATTACTGACGAGGCTGTATACCTATGTACAGGAAATCCAATGCCCAAAGACATAGAACAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGAGAATATCTGAAATAAAGACCAGAAAAGGATTAGCTTTGGTTGATATAGTGAGAGAAGTCACTATGTTTGTTTTTAAGATCAAGATGCCATCGGATGTCAGAGTTCAGTTGATTAATGATCTGGCTGACATAGAGTACAGAATGAGTTTTGGATGCAACGACAAATTACAACTCGGATTGCTCATCTCATCGTTTACTCAAGCCAGATATGCACTCGTTGGTGCTGCAGATTCGCTCACCAACCATCTGTCGCACGCACCCGTGTGCATCGATTAG

Protein sequence

MLEVITVIDIDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVVRQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALNILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVGAADSLTNHLSHAPVCID

Homology

[Close]

BLAST of Carg24427 vs. NCBI nr
Match: KAG7032812.1 (Replication factor C subunit 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 746.9 bits (1927), Expect = 8.6e-212
Identity = 377/377 (100.00%), Postives = 377/377 (100.00%), Query Frame = 0


Query: 1   MLEVITVIDIDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI 60
           MLEVITVIDIDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI
Sbjct: 1   MLEVITVIDIDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120

Query: 121 RQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV 180
           RQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV
Sbjct: 121 RQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240

Query: 241 ILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG 360
           DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG
Sbjct: 301 DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG 360

Query: 361 AADSLTNHLSHAPVCID 378
           AADSLTNHLSHAPVCID
Sbjct: 361 AADSLTNHLSHAPVCID 377

[Close]

BLAST of Carg24427 vs. NCBI nr
Match: KAG6602109.1 (Replication factor C subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 709.9 bits (1831), Expect = 1.2e-200
Identity = 359/363 (98.90%), Postives = 360/363 (99.17%), Query Frame = 0


Query: 1   MLEVITVIDIDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI 60
           M EVITVID+DDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI
Sbjct: 1   MSEVITVIDMDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120

Query: 121 RQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV 180
           RQQIQNFVSTQSFSFGVK SVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV
Sbjct: 121 RQQIQNFVSTQSFSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240

Query: 241 ILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMAS HITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 ILQSTHMASHHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG 360
           DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG
Sbjct: 301 DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG 360

Query: 361 AAD 364
           AAD
Sbjct: 361 AAD 363

[Close]

BLAST of Carg24427 vs. NCBI nr
Match: XP_022957601.1 (replication factor C subunit 3-like [Cucurbita moschata])

HSP 1 Score: 708.4 bits (1827), Expect = 3.4e-200
Identity = 358/363 (98.62%), Postives = 360/363 (99.17%), Query Frame = 0


Query: 1   MLEVITVIDIDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI 60
           M EVITVID+DDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI
Sbjct: 1   MSEVITVIDMDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120

Query: 121 RQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV 180
           RQQIQNFVSTQSFSFGVK SVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV
Sbjct: 121 RQQIQNFVSTQSFSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240

Query: 241 ILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMAS HITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 ILQSTHMASHHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG 360
           DIVREVTMFVFKIKMPS+VRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG
Sbjct: 301 DIVREVTMFVFKIKMPSEVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG 360

Query: 361 AAD 364
           AAD
Sbjct: 361 AAD 363

[Close]

BLAST of Carg24427 vs. NCBI nr
Match: XP_022989996.1 (replication factor C subunit 3-like [Cucurbita maxima])

HSP 1 Score: 689.9 bits (1779), Expect = 1.2e-194
Identity = 349/363 (96.14%), Postives = 357/363 (98.35%), Query Frame = 0


Query: 1   MLEVITVIDIDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI 60
           M EVITVIDIDDD+DNNEAEKRVK +NVA+PAAVPDGKAIPWVEKFRPKSL DVAAHRDI
Sbjct: 1   MSEVITVIDIDDDNDNNEAEKRVKCSNVASPAAVPDGKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120

Query: 121 RQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV 180
           RQQIQNFVSTQSFSFGVK SVKLVLLDEADAMTKDAQFALRRV+EKYTKGTRFTLICNHV
Sbjct: 121 RQQIQNFVSTQSFSFGVKPSVKLVLLDEADAMTKDAQFALRRVVEKYTKGTRFTLICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240

Query: 241 ILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           I+QSTHMASQHITDEAVY+CTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 IMQSTHMASQHITDEAVYICTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG 360
           DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFT+AR ALV 
Sbjct: 301 DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTKARCALVS 360

Query: 361 AAD 364
           AA+
Sbjct: 361 AAE 363

[Close]

BLAST of Carg24427 vs. NCBI nr
Match: XP_023550964.1 (replication factor C subunit 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 688.0 bits (1774), Expect = 4.7e-194
Identity = 351/363 (96.69%), Postives = 355/363 (97.80%), Query Frame = 0


Query: 1   MLEVITVIDIDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI 60
           M EVITVIDIDDD D+NEAEKRVKGNNVA+ AAVPDGKAIPWVEKFRPKSL DVAAHRDI
Sbjct: 1   MSEVITVIDIDDDIDDNEAEKRVKGNNVASTAAVPDGKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120

Query: 121 RQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV 180
           RQQIQNFVSTQSFSFGVK SVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV
Sbjct: 121 RQQIQNFVSTQSFSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVT+RLRYVIEAERLDVSESGLAALVRLCGGDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTKRLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240

Query: 241 ILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG 360
           DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSF CNDKLQLGLLISSFTQAR ALV 
Sbjct: 301 DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFSCNDKLQLGLLISSFTQARCALVD 360

Query: 361 AAD 364
           AA+
Sbjct: 361 AAE 363

[Close]

BLAST of Carg24427 vs. ExPASy Swiss-Prot
Match: Q9CAQ8 (Replication factor C subunit 5 OS=Arabidopsis thaliana OX=3702 GN=RFC5 PE=1 SV=1)

HSP 1 Score: 539.7 bits (1389), Expect = 2.7e-152
Identity = 279/371 (75.20%), Postives = 315/371 (84.91%), Query Frame = 0


Query: 1   MLEVITVIDIDDDDDNNEAEKRV-KGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRD 60
           M E+ + +DID D+   +  K + KG +V      P  KA PWVEK+RP+SLDDVAAHRD
Sbjct: 1   MTELTSAMDIDVDE--IQPRKPINKGKDVVGFGPPPQSKATPWVEKYRPQSLDDVAAHRD 60

Query: 61  IVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDV 120
           I+DTID+LT+EN+LPHLLLYGPPGTGKTSTILAVARKLYG  Y  MILELNASDDRGIDV
Sbjct: 61  IIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRGIDV 120

Query: 121 VRQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNH 180
           VRQQIQ+F STQSFS G KSSVKLVLLDEADAMTKDAQFALRRVIEKYTK TRF LI NH
Sbjct: 121 VRQQIQDFASTQSFSLG-KSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNH 180

Query: 181 VNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKAL 240
           VNKIIPALQSRCTRFRFAPLD  H+++RL++VIEAERL VS+ GLAALVRL  GDMRKAL
Sbjct: 181 VNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKAL 240

Query: 241 NILQSTHMASQHITDEA--------VYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEI 300
           NILQSTHMAS+ IT+E         VYLCTGNP+PKDIEQIS WLLN+PF + +K +SEI
Sbjct: 241 NILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQISHWLLNKPFDECYKDVSEI 300

Query: 301 KTRKGLALVDIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSF 360
           KTRKGLA+VDIV+E+T+F+FKIKMPS VRVQLINDLADIEYR+SFGCNDKLQLG +IS+F
Sbjct: 301 KTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYRLSFGCNDKLQLGAIISTF 360

Query: 361 TQARYALVGAA 363
           T AR  +VGAA
Sbjct: 361 THARSIIVGAA 368

[Close]

BLAST of Carg24427 vs. ExPASy Swiss-Prot
Match: Q6YZ54 (Replication factor C subunit 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 538.5 bits (1386), Expect = 6.1e-152
Identity = 265/331 (80.06%), Postives = 298/331 (90.03%), Query Frame = 0


Query: 32  AAVPDGKAIPWVEKFRPKSLDDVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTIL 91
           ++ P G+A PWVEK+RP+SL DVAAHRDIVDTID+LT+ENRLPHLLLYGPPGTGKTSTIL
Sbjct: 30  SSTPGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTIL 89

Query: 92  AVARKLYGANYHKMILELNASDDRGIDVVRQQIQNFVSTQSFSFGVKSSVKLVLLDEADA 151
           AVARKLYG+ Y  MILELNASD+RGIDVVRQQIQ+F S +S SFG K SVK+VLLDEADA
Sbjct: 90  AVARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEADA 149

Query: 152 MTKDAQFALRRVIEKYTKGTRFTLICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYV 211
           MTKDAQFALRRVIEK+T+ TRF LICNHVNKIIPALQSRCTRFRFAPLD  HV ERL+++
Sbjct: 150 MTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHI 209

Query: 212 IEAERLDVSESGLAALVRLCGGDMRKALNILQSTHMASQHITDEAVYLCTGNPMPKDIEQ 271
           I++E LDV + GL ALVRL  GDMRKALNILQSTHMAS+ IT+EAVYLCTGNPMPKDIEQ
Sbjct: 210 IQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNPMPKDIEQ 269

Query: 272 ISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTMFVFKIKMPSDVRVQLINDLADIE 331
           I++WLLNE FS SFK IS++K RKGLALVDI+REVTMFVFKI+MPSDVR++LINDLADIE
Sbjct: 270 IAYWLLNESFSTSFKCISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADIE 329

Query: 332 YRMSFGCNDKLQLGLLISSFTQARYALVGAA 363
           YR+SF CNDKLQLG LIS+FT AR A+V AA
Sbjct: 330 YRLSFACNDKLQLGALISTFTGARTAMVAAA 360

[Close]

BLAST of Carg24427 vs. ExPASy Swiss-Prot
Match: P40937 (Replication factor C subunit 5 OS=Homo sapiens OX=9606 GN=RFC5 PE=1 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 2.3e-103
Identity = 185/324 (57.10%), Postives = 247/324 (76.23%), Query Frame = 0


Query: 40  IPWVEKFRPKSLDDVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLY- 99
           +PWVEK+RP++L+D+ +H+DI+ TI K  +E+RLPHLLLYGPPGTGKTSTILA A++LY 
Sbjct: 20  LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYK 79

Query: 100 GANYHKMILELNASDDRGIDVVRQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQF 159
              +  M+LELNASDDRGID++R  I +F ST++     K   KLV+LDEADAMT+DAQ 
Sbjct: 80  DKEFGSMVLELNASDDRGIDIIRGPILSFASTRTI---FKKGFKLVILDEADAMTQDAQN 139

Query: 160 ALRRVIEKYTKGTRFTLICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLD 219
           ALRRVIEK+T+ TRF LICN+++KIIPALQSRCTRFRF PL    +  RL +V+E E++D
Sbjct: 140 ALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVD 199

Query: 220 VSESGLAALVRLCGGDMRKALNILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLN 279
           +SE G+ ALV L  GDMR+ALNILQST+MA   +T+E VY CTG+P+  DI  I  W+LN
Sbjct: 200 ISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLN 259

Query: 280 EPFSDSFKRISEIKTRKGLALVDIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGC 339
           + F+ +++ I+E+KT KGLAL DI+ E+ +FV ++  PS VR+ L+  +ADIEYR+S G 
Sbjct: 260 QDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGT 319

Query: 340 NDKLQLGLLISSFTQARYALVGAA 363
           N+K+QL  LI++F   R  +V  A
Sbjct: 320 NEKIQLSSLIAAFQVTRDLIVAEA 340

[Close]

BLAST of Carg24427 vs. ExPASy Swiss-Prot
Match: Q9D0F6 (Replication factor C subunit 5 OS=Mus musculus OX=10090 GN=Rfc5 PE=1 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 2.0e-102
Identity = 188/331 (56.80%), Postives = 246/331 (74.32%), Query Frame = 0


Query: 33  AVPDGKAIPWVEKFRPKSLDDVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILA 92
           A    + +PWVEK+RP++L D+ +H+DI+ TI K  SE+RLPHLLLYGPPGTGKTSTILA
Sbjct: 12  AAARARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILA 71

Query: 93  VARKLY-GANYHKMILELNASDDRGIDVVRQQIQNFVSTQSFSFGVKSSVKLVLLDEADA 152
            A++LY    +  M+LELNASDDRGID+VR  I +F ST++     K   KLV+LDEADA
Sbjct: 72  CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTI---FKKGFKLVILDEADA 131

Query: 153 MTKDAQFALRRVIEKYTKGTRFTLICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYV 212
           MT+DAQ ALRRVIEK+T+ TRF LICN+++KIIPALQSRCTRFRF PL    +  RL +V
Sbjct: 132 MTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHV 191

Query: 213 IEAERLDVSESGLAALVRLCGGDMRKALNILQSTHMASQHITDEAVYLCTGNPMPKDIEQ 272
           ++ E +D+SE G+ ALV L  GDMR+ALNILQST+MA   +T+E VY CTG+P+  DI  
Sbjct: 192 VQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTDIAN 251

Query: 273 ISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTMFVFKIKMPSDVRVQLINDLADIE 332
           I  W+LN+ F+ ++K I E+KT KGLAL DI+ EV +FV ++  PS VR+ L+  +ADIE
Sbjct: 252 ILDWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIE 311

Query: 333 YRMSFGCNDKLQLGLLISSFTQARYALVGAA 363
           YR+S G ++K+QL  LI++F   R  +V  A
Sbjct: 312 YRLSVGTSEKIQLSSLIAAFQVTRDLIVAEA 339

[Close]

BLAST of Carg24427 vs. ExPASy Swiss-Prot
Match: Q54ST4 (Probable replication factor C subunit 5 OS=Dictyostelium discoideum OX=44689 GN=rfc5 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.3e-98
Identity = 181/320 (56.56%), Postives = 234/320 (73.12%), Query Frame = 0


Query: 38  KAIPWVEKFRPKSLDDVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKL 97
           +++PWVEK+RPK+LDD+ AH DI  TI KL   N LPHLL YGPPGTGKTSTI A+ARKL
Sbjct: 22  ESLPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKL 81

Query: 98  YGANYHKMILELNASDDRGIDVVRQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQ 157
           YG NY +M+LELNASDDRGIDVVR+QI+ F S+  F F      KL++LDEAD+MT  AQ
Sbjct: 82  YGDNYSRMVLELNASDDRGIDVVREQIKTFASSM-FFFNTTVPYKLIILDEADSMTNIAQ 141

Query: 158 FALRRVIEKYTKGTRFTLICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERL 217
            ALRRVIEKYTK TRF ++CN+V KIIPALQSRCTRFRF+PL       RL+ +IE E +
Sbjct: 142 TALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENV 201

Query: 218 DVSESGLAALVRLCGGDMRKALNILQSTHMAS--QHITDEAVYLCTGNPMPKDIEQISFW 277
            V    + A++ L  GDMRK LNILQS  M+S   +IT+EA+Y CTG PMP DIE +  W
Sbjct: 202 KVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDW 261

Query: 278 LLNEPFSDSFKRISEIKTRKGLALVDIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMS 337
           LLN  + ++F+ IS++K +KGL+L DI+  +  FV +I + + +  +L++ L+DIEY +S
Sbjct: 262 LLNSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQIDLDNVILCKLLSHLSDIEYNLS 321

Query: 338 FGCNDKLQLGLLISSFTQAR 356
            G ++KLQLG L+  F  +R
Sbjct: 322 IGSSEKLQLGSLVGCFQLSR 340

[Close]

BLAST of Carg24427 vs. ExPASy TrEMBL
Match: A0A6J1GZP0 (replication factor C subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC111458994 PE=3 SV=1)

HSP 1 Score: 708.4 bits (1827), Expect = 1.6e-200
Identity = 358/363 (98.62%), Postives = 360/363 (99.17%), Query Frame = 0


Query: 1   MLEVITVIDIDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI 60
           M EVITVID+DDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI
Sbjct: 1   MSEVITVIDMDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120

Query: 121 RQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV 180
           RQQIQNFVSTQSFSFGVK SVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV
Sbjct: 121 RQQIQNFVSTQSFSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240

Query: 241 ILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMAS HITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 ILQSTHMASHHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG 360
           DIVREVTMFVFKIKMPS+VRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG
Sbjct: 301 DIVREVTMFVFKIKMPSEVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG 360

Query: 361 AAD 364
           AAD
Sbjct: 361 AAD 363

[Close]

BLAST of Carg24427 vs. ExPASy TrEMBL
Match: A0A6J1JLQ5 (replication factor C subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111487024 PE=3 SV=1)

HSP 1 Score: 689.9 bits (1779), Expect = 6.0e-195
Identity = 349/363 (96.14%), Postives = 357/363 (98.35%), Query Frame = 0


Query: 1   MLEVITVIDIDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI 60
           M EVITVIDIDDD+DNNEAEKRVK +NVA+PAAVPDGKAIPWVEKFRPKSL DVAAHRDI
Sbjct: 1   MSEVITVIDIDDDNDNNEAEKRVKCSNVASPAAVPDGKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120

Query: 121 RQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV 180
           RQQIQNFVSTQSFSFGVK SVKLVLLDEADAMTKDAQFALRRV+EKYTKGTRFTLICNHV
Sbjct: 121 RQQIQNFVSTQSFSFGVKPSVKLVLLDEADAMTKDAQFALRRVVEKYTKGTRFTLICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240

Query: 241 ILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           I+QSTHMASQHITDEAVY+CTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 IMQSTHMASQHITDEAVYICTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG 360
           DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFT+AR ALV 
Sbjct: 301 DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTKARCALVS 360

Query: 361 AAD 364
           AA+
Sbjct: 361 AAE 363

[Close]

BLAST of Carg24427 vs. ExPASy TrEMBL
Match: A0A5A7UJX6 (Replication factor C subunit 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00240 PE=3 SV=1)

HSP 1 Score: 658.7 bits (1698), Expect = 1.5e-185
Identity = 333/362 (91.99%), Postives = 346/362 (95.58%), Query Frame = 0


Query: 1   MLEVITVIDIDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI 60
           M EVI+V+DIDDD+ NNEAEK VKG NVA+PAA P+ KAIPWVEKFRPKSL DVAAHRDI
Sbjct: 1   MSEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEVKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG NYH MILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV 180
           RQQIQ+F STQSFSFGVK+SVKLVLLDEADAMTKDAQFALRRVIEKYTK TRF LICNHV
Sbjct: 121 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDV+ESGLAALVRLC GDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTESGLAALVRLCSGDMRKALN 240

Query: 241 ILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMASQHIT+EAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG 360
           DIVREVT+FVFKIKMPS++RVQLINDLADIEYRMSFGCNDKLQLG LISSFT+AR ALV 
Sbjct: 301 DIVREVTLFVFKIKMPSNIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360

Query: 361 AA 363
           AA
Sbjct: 361 AA 362

[Close]

BLAST of Carg24427 vs. ExPASy TrEMBL
Match: A0A1S3CRX1 (replication factor C subunit 5 OS=Cucumis melo OX=3656 GN=LOC103504076 PE=3 SV=1)

HSP 1 Score: 658.7 bits (1698), Expect = 1.5e-185
Identity = 333/362 (91.99%), Postives = 346/362 (95.58%), Query Frame = 0


Query: 1   MLEVITVIDIDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI 60
           M EVI+V+DIDDD+ NNEAEK VKG NVA+PAA P+ KAIPWVEKFRPKSL DVAAHRDI
Sbjct: 1   MSEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEVKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG NYH MILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV 180
           RQQIQ+F STQSFSFGVK+SVKLVLLDEADAMTKDAQFALRRVIEKYTK TRF LICNHV
Sbjct: 121 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDV+ESGLAALVRLC GDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTESGLAALVRLCSGDMRKALN 240

Query: 241 ILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMASQHIT+EAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG 360
           DIVREVT+FVFKIKMPS++RVQLINDLADIEYRMSFGCNDKLQLG LISSFT+AR ALV 
Sbjct: 301 DIVREVTLFVFKIKMPSNIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA 360

Query: 361 AA 363
           AA
Sbjct: 361 AA 362

[Close]

BLAST of Carg24427 vs. ExPASy TrEMBL
Match: A0A0A0KDS9 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G382960 PE=3 SV=1)

HSP 1 Score: 656.8 bits (1693), Expect = 5.6e-185
Identity = 331/362 (91.44%), Postives = 345/362 (95.30%), Query Frame = 0


Query: 1   MLEVITVIDIDDDDDNNEAEKRVKGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRDI 60
           M EVI+V+DIDDD+ NNEAEK VKG NVA+PAA P+GKAIPWVEKFRPKSL DVAAHRDI
Sbjct: 1   MSEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEGKAIPWVEKFRPKSLADVAAHRDI 60

Query: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDVV 120
           VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG NYH MILELNASDDRGIDVV
Sbjct: 61  VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 121 RQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNHV 180
           RQQIQ+F STQSFSFG K+SVKLVLLDEADAMTKDAQFALRRVIEKYTK TRF LICNHV
Sbjct: 121 RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKALN 240
           NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDV+E GLAALVRLC GDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN 240

Query: 241 ILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300
           ILQSTHMASQHIT+EAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV
Sbjct: 241 ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 301 DIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSFTQARYALVG 360
           DIVREVT+FVFKI+MPS++RVQLINDLADIEYRM+FGCNDKLQLG LISSFT AR ALVG
Sbjct: 301 DIVREVTLFVFKIEMPSNIRVQLINDLADIEYRMTFGCNDKLQLGSLISSFTGARSALVG 360

Query: 361 AA 363
           AA
Sbjct: 361 AA 362

[Close]

BLAST of Carg24427 vs. TAIR 10
Match: AT1G77470.1 (replication factor C subunit 3 )

HSP 1 Score: 539.7 bits (1389), Expect = 1.9e-153
Identity = 279/371 (75.20%), Postives = 315/371 (84.91%), Query Frame = 0


Query: 1   MLEVITVIDIDDDDDNNEAEKRV-KGNNVANPAAVPDGKAIPWVEKFRPKSLDDVAAHRD 60
           M E+ + +DID D+   +  K + KG +V      P  KA PWVEK+RP+SLDDVAAHRD
Sbjct: 1   MTELTSAMDIDVDE--IQPRKPINKGKDVVGFGPPPQSKATPWVEKYRPQSLDDVAAHRD 60

Query: 61  IVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGANYHKMILELNASDDRGIDV 120
           I+DTID+LT+EN+LPHLLLYGPPGTGKTSTILAVARKLYG  Y  MILELNASDDRGIDV
Sbjct: 61  IIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRGIDV 120

Query: 121 VRQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKGTRFTLICNH 180
           VRQQIQ+F STQSFS G KSSVKLVLLDEADAMTKDAQFALRRVIEKYTK TRF LI NH
Sbjct: 121 VRQQIQDFASTQSFSLG-KSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNH 180

Query: 181 VNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVSESGLAALVRLCGGDMRKAL 240
           VNKIIPALQSRCTRFRFAPLD  H+++RL++VIEAERL VS+ GLAALVRL  GDMRKAL
Sbjct: 181 VNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVRLSNGDMRKAL 240

Query: 241 NILQSTHMASQHITDEA--------VYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEI 300
           NILQSTHMAS+ IT+E         VYLCTGNP+PKDIEQIS WLLN+PF + +K +SEI
Sbjct: 241 NILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQISHWLLNKPFDECYKDVSEI 300

Query: 301 KTRKGLALVDIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGLLISSF 360
           KTRKGLA+VDIV+E+T+F+FKIKMPS VRVQLINDLADIEYR+SFGCNDKLQLG +IS+F
Sbjct: 301 KTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYRLSFGCNDKLQLGAIISTF 360

Query: 361 TQARYALVGAA 363
           T AR  +VGAA
Sbjct: 361 THARSIIVGAA 368

[Close]

BLAST of Carg24427 vs. TAIR 10
Match: AT1G63160.1 (replication factor C 2 )

HSP 1 Score: 208.8 bits (530), Expect = 7.8e-54
Identity = 121/323 (37.46%), Postives = 177/323 (54.80%), Query Frame = 0


Query: 36  DGKAIPWVEKFRPKSLDDVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVAR 95
           DG   PWVEK+RP  + D+  + D V  +  +  +  +P+L+L GPPGTGKT++ILA+A 
Sbjct: 11  DGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAH 70

Query: 96  KLYGANYHKMILELNASDDRGIDVVRQQIQNFVSTQSFSFGVKSSVKLVLLDEADAMTKD 155
           +L G NY + +LELNASDDRGIDVVR +I+ F   Q          K+V+LDEAD+MT  
Sbjct: 71  ELLGTNYKEAVLELNASDDRGIDVVRNKIKMF--AQKKVTLPPGRHKVVILDEADSMTSG 130

Query: 156 AQFALRRVIEKYTKGTRFTLICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAE 215
           AQ ALRR IE Y+  TRF L CN   KII  +QSRC   RF+ L +  +  RL  V+ AE
Sbjct: 131 AQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAE 190

Query: 216 RLDVSESGLAALVRLCGGDMRKALNILQSTHMASQHITDEAVYLCTGNPMPKDIEQISFW 275
           ++     GL A++    GDMR+ALN LQ+T      +  E V+     P P  ++ I   
Sbjct: 191 KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHVKNIVRN 250

Query: 276 LLNEPFS---DSFKRISEIKTRKGLALVDIVREVTMFVFKIKMPSDVRVQLINDLADIEY 335
           +L   F    D  K++ ++    G +  DI+  +   +    M   ++++ + +      
Sbjct: 251 VLESKFDIACDGLKQLYDL----GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHM 310

Query: 336 RMSFGCNDKLQLGLLISSFTQAR 356
           R+  G    LQL  L++  +  R
Sbjct: 311 RICDGVGSYLQLCGLLAKLSIVR 327

[Close]

BLAST of Carg24427 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 196.8 bits (499), Expect = 3.1e-50
Identity = 116/315 (36.83%), Postives = 180/315 (57.14%), Query Frame = 0


Query: 41  PWVEKFRPKSLDDVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 100
           PWVEK+RPK + DVA   ++V  +         PH+L YGPPGTGKT+T LA+A +L+G 
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 101 N-YHKMILELNASDDRGIDVVRQQIQNFVSTQSFSFGVKS-----SVKLVLLDEADAMTK 160
             Y   +LELNASDDRGI+VVR +I++F +    S   +S     S K+++LDEAD+MT+
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 161 DAQFALRRVIEKYTKGTRFTLICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEA 220
           DAQ ALRR +E Y+K TRF  ICN++++II  L SRC +FRF PL    ++ R+ ++   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 221 ERLDVSESGLAALVRLCGGDMRKALNILQS-THMASQHITDEAVYLCTGNPMPKDIEQIS 280
           E L +    L+ L  +  GD+R+A+  LQS T +    IT   +   +G    + + ++ 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 281 FWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTMFVFKIKMPSDV----RVQLINDLAD 340
               +  F  + K +  I   +G     I+ +  +F    +  SD+    + ++   LA+
Sbjct: 250 TACKSGDFDIANKEVDNI-VAEGYPASQIINQ--LFDIVAEADSDITDMQKAKICKCLAE 309

Query: 341 IEYRMSFGCNDKLQL 345
            + R+  G ++ LQL
Sbjct: 310 TDKRLVDGADEYLQL 321

[Close]

BLAST of Carg24427 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 193.0 bits (489), Expect = 4.4e-49
Identity = 115/314 (36.62%), Postives = 179/314 (57.01%), Query Frame = 0


Query: 41  PWVEKFRPKSLDDVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 100
           PWVEK+RPK + DVA   ++V  +         PH+L YGPPGTGKT+T LA+A +L+G 
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFG- 69

Query: 101 NYHKMILELNASDDRGIDVVRQQIQNFVSTQSFSFGVKS-----SVKLVLLDEADAMTKD 160
                +LELNASDDRGI+VVR +I++F +    S   +S     S K+++LDEAD+MT+D
Sbjct: 70  -----VLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 129

Query: 161 AQFALRRVIEKYTKGTRFTLICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAE 220
           AQ ALRR +E Y+K TRF  ICN++++II  L SRC +FRF PL    ++ R+ ++   E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 189

Query: 221 RLDVSESGLAALVRLCGGDMRKALNILQS-THMASQHITDEAVYLCTGNPMPKDIEQISF 280
            L +    L+ L  +  GD+R+A+  LQS T +    IT   +   +G    + + ++  
Sbjct: 190 GLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFT 249

Query: 281 WLLNEPFSDSFKRISEIKTRKGLALVDIVREVTMFVFKIKMPSDV----RVQLINDLADI 340
              +  F  + K +  I   +G     I+ +  +F    +  SD+    + ++   LA+ 
Sbjct: 250 ACKSGDFDIANKEVDNI-VAEGYPASQIINQ--LFDIVAEADSDITDMQKAKICKCLAET 309

Query: 341 EYRMSFGCNDKLQL 345
           + R+  G ++ LQL
Sbjct: 310 DKRLVDGADEYLQL 314

[Close]

BLAST of Carg24427 vs. TAIR 10
Match: AT1G21690.3 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 190.7 bits (483), Expect = 2.2e-48
Identity = 97/210 (46.19%), Postives = 137/210 (65.24%), Query Frame = 0


Query: 41  PWVEKFRPKSLDDVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGA 100
           PWVEK+RPK + DVA   ++V  +         PH+L YGPPGTGKT+T LA+A +L+G 
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 101 N-YHKMILELNASDDRGIDVVRQQIQNFVSTQSFSFGVKS-----SVKLVLLDEADAMTK 160
             Y   +LELNASDDRGI+VVR +I++F +    S   +S     S K+++LDEAD+MT+
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 161 DAQFALRRVIEKYTKGTRFTLICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEA 220
           DAQ ALRR +E Y+K TRF  ICN++++II  L SRC +FRF PL    ++ R+ ++   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 221 ERLDVSESGLAALVRLCGGDMRKALNILQS 245
           E L +    L+ L  +  GD+R+A+  LQS
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQS 219

The following BLAST results are available for this feature:

BLAST of Carg24427 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032812.1	8.6e-212	100.00	Replication factor C subunit 5, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
KAG6602109.1	1.2e-200	98.90	Replication factor C subunit 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022957601.1	3.4e-200	98.62	replication factor C subunit 3-like [Cucurbita moschata]	[more]
XP_022989996.1	1.2e-194	96.14	replication factor C subunit 3-like [Cucurbita maxima]	[more]
XP_023550964.1	4.7e-194	96.69	replication factor C subunit 3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg24427 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAQ8	2.7e-152	75.20	Replication factor C subunit 5 OS=Arabidopsis thaliana OX=3702 GN=RFC5 PE=1 SV=1	[more]
Q6YZ54	6.1e-152	80.06	Replication factor C subunit 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC3 ...	[more]
P40937	2.3e-103	57.10	Replication factor C subunit 5 OS=Homo sapiens OX=9606 GN=RFC5 PE=1 SV=1	[more]
Q9D0F6	2.0e-102	56.80	Replication factor C subunit 5 OS=Mus musculus OX=10090 GN=Rfc5 PE=1 SV=1	[more]
Q54ST4	1.3e-98	56.56	Probable replication factor C subunit 5 OS=Dictyostelium discoideum OX=44689 GN=...	[more]

BLAST of Carg24427 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZP0	1.6e-200	98.62	replication factor C subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC11145899...	[more]
A0A6J1JLQ5	6.0e-195	96.14	replication factor C subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111487024 ...	[more]
A0A5A7UJX6	1.5e-185	91.99	Replication factor C subunit 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3CRX1	1.5e-185	91.99	replication factor C subunit 5 OS=Cucumis melo OX=3656 GN=LOC103504076 PE=3 SV=1	[more]
A0A0A0KDS9	5.6e-185	91.44	AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G382960 PE=3 SV...	[more]

BLAST of Carg24427 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77470.1	1.9e-153	75.20	replication factor C subunit 3	[more]
AT1G63160.1	7.8e-54	37.46	replication factor C 2	[more]
AT1G21690.1	3.1e-50	36.83	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.4	4.4e-49	36.62	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.3	2.2e-48	46.19	ATPase family associated with various cellular activities (AAA)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 72..202 e-value: 1.1E-11 score: 54.8
None	No IPR available	GENE3D	1.10.8.60		coord: 202..263 e-value: 3.6E-22 score: 79.5
None	No IPR available	GENE3D	1.20.272.10		coord: 264..359 e-value: 4.4E-30 score: 105.5
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 37..357
None	No IPR available	PANTHER	PTHR11669:SF9	REPLICATION FACTOR C SUBUNIT 5	coord: 37..357
None	No IPR available	CDD	cd00009	AAA	coord: 60..198 e-value: 6.36288E-22 score: 89.1275
None	No IPR available	CDD	cd18140	HLD_clamp_RFC	coord: 203..261 e-value: 8.45243E-18 score: 74.8729
IPR013748	Replication factor C, C-terminal	PFAM	PF08542	Rep_fac_C	coord: 264..349 e-value: 1.0E-15 score: 57.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 36..198 e-value: 1.9E-52 score: 179.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 40..257
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 76..196 e-value: 8.6E-16 score: 58.6
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	48019	post-AAA+ oligomerization domain-like	coord: 264..354

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24427-RA	Carg24427-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005663	DNA replication factor C complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003689	DNA clamp loader activity