Carg24362 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24362
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionATP synthase
LocationCarg_Chr07: 5440915 .. 5441563 (+)
RNA-Seq ExpressionCarg24362
SyntenyCarg24362
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTACATTTGCGAAAGAGAATCGAGACGACGAACGCAGACAGTCGAAGGAAGATGAGGAAGTTCGATCCATGGCCGGTGTTTTTCAGGCGAGAGTGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACTGGGGCCCTTATTACCAAGATGACCGCCGGACTTTCTGGTATGATGATCGATTTTTTTTTTTTTTTTGTGGATTGAATTCGATTCCTTTACTTCTAATTGTGTTGATCCTTGTGACGTTTGATTTTCAGAGGAAGAGGTGAAGCAGTCTCCTTTCTACAAGAGGCACAATCGGTATTTTCTCGGAACCCTAATTTACTATCCCACGCCCCGCACTTTTGATTTGCAAATGAATGAAATCTAGTGTCCGATACAATTTCGATTTGTGGTTTTCGTCTGATAAGTTATGAATCGTTAATGAGAATTGTACATTTTATCACTTGTTTTCTTTCTTTTTGAATCGGGGTTGTTTATATTTATTGAGTGTGGTTGTGGTAAAGACTGGCATAGATTGTTTATGTTCATGTATTGCTTGCTGATTTTTCTTCGATGACCATCCAGATATGTCATCGTAGTTTCTTTCTTTGGGAGTATACTTTTTAATTTTCCCATTTGATTGGAAGGCGATTTTAGAG

mRNA sequence

GTTTACATTTGCGAAAGAGAATCGAGACGACGAACGCAGACAGTCGAAGGAAGATGAGGAAGTTCGATCCATGGCCGGTGTTTTTCAGGCGAGAGTGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACTGGGGCCCTTATTACCAAGATGACCGCCGGACTTTCTGAGGAAGAGGTGAAGCAGTCTCCTTTCTACAAGAGGCACAATCGGTATTTTCTCGGAACCCTAATTTACTATCCCACGCCCCGCACTTTTGATTTGCAAATGAATGAAATCTAGTGTCCGATACAATTTCGATTTGTGGTTTTCGTCTGATAAGTTATGAATCGTTAATGAGAATTGTACATTTTATCACTTGTTTTCTTTCTTTTTGAATCGGGGTTGTTTATATTTATTGAGTGTGGTTGTGGTAAAGACTGGCATAGATTGTTTATGTTCATGTATTGCTTGCTGATTTTTCTTCGATGACCATCCAGATATGTCATCGTAGTTTCTTTCTTTGGGAGTATACTTTTTAATTTTCCCATTTGATTGGAAGGCGATTTTAGAG

Coding sequence (CDS)

ATGAGGAAGTTCGATCCATGGCCGGTGTTTTTCAGGCGAGAGTGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACTGGGGCCCTTATTACCAAGATGACCGCCGGACTTTCTGAGGAAGAGGTGAAGCAGTCTCCTTTCTACAAGAGGCACAATCGGTATTTTCTCGGAACCCTAATTTACTATCCCACGCCCCGCACTTTTGATTTGCAAATGAATGAAATCTAG

Protein sequence

MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNRYFLGTLIYYPTPRTFDLQMNEI
Homology
BLAST of Carg24362 vs. NCBI nr
Match: KAG7027319.1 (hypothetical protein SDJN02_11331 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.0 bits (432), Expect = 4.0e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNRYFLGT 60
          MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNRYFLGT
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNRYFLGT 60

Query: 61 LIYYPTPRTFDLQMNEI 78
          LIYYPTPRTFDLQMNEI
Sbjct: 61 LIYYPTPRTFDLQMNEI 77

BLAST of Carg24362 vs. NCBI nr
Match: KAE8649524.1 (hypothetical protein Csa_017989, partial [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 3.8e-26
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNRYFLGT 60
          MRKFDPWPVFFRREWKRNWPFLVGFAITG+LITKMTAG +EEEVK SPF +RHNRYFLGT
Sbjct: 11 MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNRYFLGT 70

Query: 61 LI 63
          LI
Sbjct: 71 LI 72

BLAST of Carg24362 vs. NCBI nr
Match: XP_022963015.1 (uncharacterized protein LOC111463349 [Cucurbita moschata] >XP_022972765.1 uncharacterized protein LOC111471274 [Cucurbita maxima])

HSP 1 Score: 124.0 bits (310), Expect = 5.6e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 55

BLAST of Carg24362 vs. NCBI nr
Match: XP_023517883.1 (uncharacterized protein LOC111781491 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.6 bits (309), Expect = 7.2e-25
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFA+TGALITKMTAGLSEEEVKQSPFYKRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAVTGALITKMTAGLSEEEVKQSPFYKRHNR 55

BLAST of Carg24362 vs. NCBI nr
Match: XP_038881285.1 (uncharacterized protein LOC120072840 [Benincasa hispida])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITG LITKMTAGLSEEEVK SPF +RHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGTLITKMTAGLSEEEVKNSPFVQRHNR 55

BLAST of Carg24362 vs. ExPASy Swiss-Prot
Match: P80497 (ATP synthase 6 kDa subunit, mitochondrial (Fragment) OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-06
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGF 26
          MR+FDPWPVFFRREW RN PFLV F
Sbjct: 1  MRQFDPWPVFFRREWSRNQPFLVXF 25

BLAST of Carg24362 vs. ExPASy TrEMBL
Match: A0A0A0KZI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G294910 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNRYFLGT 60
          MRKFDPWPVFFRREWKRNWPFLVGFAITG+LITKMTAG +EEEVK SPF +RHNRYFLGT
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNRYFLGT 60

Query: 61 LI 63
          LI
Sbjct: 61 LI 62

BLAST of Carg24362 vs. ExPASy TrEMBL
Match: A0A6J1I9K7 (uncharacterized protein LOC111471274 OS=Cucurbita maxima OX=3661 GN=LOC111471274 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.7e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 55

BLAST of Carg24362 vs. ExPASy TrEMBL
Match: A0A6J1HGT1 (uncharacterized protein LOC111463349 OS=Cucurbita moschata OX=3662 GN=LOC111463349 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.7e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 55

BLAST of Carg24362 vs. ExPASy TrEMBL
Match: A0A5A7SNJ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00070 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.8e-22
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITGA ITKMTAG SEEEVK SPF +RHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGAAITKMTAGFSEEEVKNSPFVQRHNR 55

BLAST of Carg24362 vs. ExPASy TrEMBL
Match: A0A1S3BIW2 (uncharacterized protein LOC103490081 OS=Cucumis melo OX=3656 GN=LOC103490081 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.8e-22
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITGA ITKMTAG SEEEVK SPF +RHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGAAITKMTAGFSEEEVKNSPFVQRHNR 55

BLAST of Carg24362 vs. TAIR 10
Match: AT3G46430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59613.2); Has 51 Blast hits to 51 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.7 bits (234), Expect = 3.4e-20
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MR FDPWPVFF+REWKR WPFL GFA+TG LITK+TAGL+EE+ K S F ++H R
Sbjct: 1  MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

BLAST of Carg24362 vs. TAIR 10
Match: AT5G59613.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 94.7 bits (234), Expect = 3.4e-20
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MR FDPWPVFF+REWKR WPFL GFA+TG LITK+TAGL+EE+ K S F ++H R
Sbjct: 1  MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

BLAST of Carg24362 vs. TAIR 10
Match: AT5G59613.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). )

HSP 1 Score: 94.7 bits (234), Expect = 3.4e-20
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MR FDPWPVFF+REWKR WPFL GFA+TG LITK+TAGL+EE+ K S F ++H R
Sbjct: 1  MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7027319.14.0e-39100.00hypothetical protein SDJN02_11331 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAE8649524.13.8e-2690.32hypothetical protein Csa_017989, partial [Cucumis sativus][more]
XP_022963015.15.6e-25100.00uncharacterized protein LOC111463349 [Cucurbita moschata] >XP_022972765.1 unchar... [more]
XP_023517883.17.2e-2598.18uncharacterized protein LOC111781491 [Cucurbita pepo subsp. pepo][more]
XP_038881285.11.5e-2292.73uncharacterized protein LOC120072840 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
P804972.1e-0684.00ATP synthase 6 kDa subunit, mitochondrial (Fragment) OS=Solanum tuberosum OX=411... [more]
Match NameE-valueIdentityDescription
A0A0A0KZI31.9e-2690.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G294910 PE=4 SV=1[more]
A0A6J1I9K72.7e-25100.00uncharacterized protein LOC111471274 OS=Cucurbita maxima OX=3661 GN=LOC111471274... [more]
A0A6J1HGT12.7e-25100.00uncharacterized protein LOC111463349 OS=Cucurbita moschata OX=3662 GN=LOC1114633... [more]
A0A5A7SNJ62.8e-2290.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BIW22.8e-2290.91uncharacterized protein LOC103490081 OS=Cucumis melo OX=3656 GN=LOC103490081 PE=... [more]
Match NameE-valueIdentityDescription
AT3G46430.13.4e-2070.91unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G59613.13.4e-2070.91unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G59613.23.4e-2070.91unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34565TRANSMEMBRANE PROTEINcoord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24362-RACarg24362-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane