Carg24362 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTTTACATTTGCGAAAGAGAATCGAGACGACGAACGCAGACAGTCGAAGGAAGATGAGGAAGTTCGATCCATGGCCGGTGTTTTTCAGGCGAGAGTGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACTGGGGCCCTTATTACCAAGATGACCGCCGGACTTTCTGGTATGATGATCGATTTTTTTTTTTTTTTTGTGGATTGAATTCGATTCCTTTACTTCTAATTGTGTTGATCCTTGTGACGTTTGATTTTCAGAGGAAGAGGTGAAGCAGTCTCCTTTCTACAAGAGGCACAATCGGTATTTTCTCGGAACCCTAATTTACTATCCCACGCCCCGCACTTTTGATTTGCAAATGAATGAAATCTAGTGTCCGATACAATTTCGATTTGTGGTTTTCGTCTGATAAGTTATGAATCGTTAATGAGAATTGTACATTTTATCACTTGTTTTCTTTCTTTTTGAATCGGGGTTGTTTATATTTATTGAGTGTGGTTGTGGTAAAGACTGGCATAGATTGTTTATGTTCATGTATTGCTTGCTGATTTTTCTTCGATGACCATCCAGATATGTCATCGTAGTTTCTTTCTTTGGGAGTATACTTTTTAATTTTCCCATTTGATTGGAAGGCGATTTTAGAG GTTTACATTTGCGAAAGAGAATCGAGACGACGAACGCAGACAGTCGAAGGAAGATGAGGAAGTTCGATCCATGGCCGGTGTTTTTCAGGCGAGAGTGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACTGGGGCCCTTATTACCAAGATGACCGCCGGACTTTCTGAGGAAGAGGTGAAGCAGTCTCCTTTCTACAAGAGGCACAATCGGTATTTTCTCGGAACCCTAATTTACTATCCCACGCCCCGCACTTTTGATTTGCAAATGAATGAAATCTAGTGTCCGATACAATTTCGATTTGTGGTTTTCGTCTGATAAGTTATGAATCGTTAATGAGAATTGTACATTTTATCACTTGTTTTCTTTCTTTTTGAATCGGGGTTGTTTATATTTATTGAGTGTGGTTGTGGTAAAGACTGGCATAGATTGTTTATGTTCATGTATTGCTTGCTGATTTTTCTTCGATGACCATCCAGATATGTCATCGTAGTTTCTTTCTTTGGGAGTATACTTTTTAATTTTCCCATTTGATTGGAAGGCGATTTTAGAG ATGAGGAAGTTCGATCCATGGCCGGTGTTTTTCAGGCGAGAGTGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACTGGGGCCCTTATTACCAAGATGACCGCCGGACTTTCTGAGGAAGAGGTGAAGCAGTCTCCTTTCTACAAGAGGCACAATCGGTATTTTCTCGGAACCCTAATTTACTATCCCACGCCCCGCACTTTTGATTTGCAAATGAATGAAATCTAG MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNRYFLGTLIYYPTPRTFDLQMNEI Homology
BLAST of Carg24362 vs. NCBI nr
Match: KAG7027319.1 (hypothetical protein SDJN02_11331 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 171.0 bits (432), Expect = 4.0e-39 Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0
BLAST of Carg24362 vs. NCBI nr
Match: KAE8649524.1 (hypothetical protein Csa_017989, partial [Cucumis sativus]) HSP 1 Score: 127.9 bits (320), Expect = 3.8e-26 Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0
BLAST of Carg24362 vs. NCBI nr
Match: XP_022963015.1 (uncharacterized protein LOC111463349 [Cucurbita moschata] >XP_022972765.1 uncharacterized protein LOC111471274 [Cucurbita maxima]) HSP 1 Score: 124.0 bits (310), Expect = 5.6e-25 Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0
BLAST of Carg24362 vs. NCBI nr
Match: XP_023517883.1 (uncharacterized protein LOC111781491 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 123.6 bits (309), Expect = 7.2e-25 Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0
BLAST of Carg24362 vs. NCBI nr
Match: XP_038881285.1 (uncharacterized protein LOC120072840 [Benincasa hispida]) HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22 Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0
BLAST of Carg24362 vs. ExPASy Swiss-Prot
Match: P80497 (ATP synthase 6 kDa subunit, mitochondrial (Fragment) OS=Solanum tuberosum OX=4113 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 2.1e-06 Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 0
BLAST of Carg24362 vs. ExPASy TrEMBL
Match: A0A0A0KZI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G294910 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26 Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0
BLAST of Carg24362 vs. ExPASy TrEMBL
Match: A0A6J1I9K7 (uncharacterized protein LOC111471274 OS=Cucurbita maxima OX=3661 GN=LOC111471274 PE=4 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 2.7e-25 Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0
BLAST of Carg24362 vs. ExPASy TrEMBL
Match: A0A6J1HGT1 (uncharacterized protein LOC111463349 OS=Cucurbita moschata OX=3662 GN=LOC111463349 PE=4 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 2.7e-25 Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0
BLAST of Carg24362 vs. ExPASy TrEMBL
Match: A0A5A7SNJ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00070 PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 2.8e-22 Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 0
BLAST of Carg24362 vs. ExPASy TrEMBL
Match: A0A1S3BIW2 (uncharacterized protein LOC103490081 OS=Cucumis melo OX=3656 GN=LOC103490081 PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 2.8e-22 Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 0
BLAST of Carg24362 vs. TAIR 10
Match: AT3G46430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59613.2); Has 51 Blast hits to 51 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 94.7 bits (234), Expect = 3.4e-20 Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0
BLAST of Carg24362 vs. TAIR 10
Match: AT5G59613.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 94.7 bits (234), Expect = 3.4e-20 Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0
BLAST of Carg24362 vs. TAIR 10
Match: AT5G59613.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). ) HSP 1 Score: 94.7 bits (234), Expect = 3.4e-20 Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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