Carg24360 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24360
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	UNC93-like protein 3
Location	Carg_Chr07: 5432343 .. 5432693 (+)
RNA-Seq Expression	Carg24360
Synteny	Carg24360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCGATTACTATACCGTCGTCTCCGATCGCGGTGGCCGCTTCTTGTCTACTCCGCCTCCTGGACGATTCTCTTGACTCTCACCGTCGCCGCCGCCTCCTTCGCGCCCGAGCTCGCCTTCGCCTCCGCAATTTCTCCGTCCTCGTCCTTTGCTTCACACTGCAAGGCCGCTGGATTCGTTAGGGTTCCGATGGATTTTCCGGGAGACGTCGTCTGCGTTCCGGATAATCTGTTTCGGAAATCCGGAATTGATCTCATCGTGCCTCCTATTTTCGCCGCGGTTGTAGTAGCCGGGTCGGCTTGCTTTGTTCGGGCCTTGGGCCTTTGGGCCGACGATGACTCCCTCTGA

mRNA sequence

ATGCTCCGATTACTATACCGTCGTCTCCGATCGCGGTGGCCGCTTCTTGTCTACTCCGCCTCCTGGACGATTCTCTTGACTCTCACCGTCGCCGCCGCCTCCTTCGCGCCCGAGCTCGCCTTCGCCTCCGCAATTTCTCCGTCCTCGTCCTTTGCTTCACACTGCAAGGCCGCTGGATTCGTTAGGGTTCCGATGGATTTTCCGGGAGACGTCGTCTGCGTTCCGGATAATCTGTTTCGGAAATCCGGAATTGATCTCATCGTGCCTCCTATTTTCGCCGCGGTTGTAGTAGCCGGGTCGGCTTGCTTTGTTCGGGCCTTGGGCCTTTGGGCCGACGATGACTCCCTCTGA

Coding sequence (CDS)

ATGCTCCGATTACTATACCGTCGTCTCCGATCGCGGTGGCCGCTTCTTGTCTACTCCGCCTCCTGGACGATTCTCTTGACTCTCACCGTCGCCGCCGCCTCCTTCGCGCCCGAGCTCGCCTTCGCCTCCGCAATTTCTCCGTCCTCGTCCTTTGCTTCACACTGCAAGGCCGCTGGATTCGTTAGGGTTCCGATGGATTTTCCGGGAGACGTCGTCTGCGTTCCGGATAATCTGTTTCGGAAATCCGGAATTGATCTCATCGTGCCTCCTATTTTCGCCGCGGTTGTAGTAGCCGGGTCGGCTTGCTTTGTTCGGGCCTTGGGCCTTTGGGCCGACGATGACTCCCTCTGA

Protein sequence

MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGFVRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL

Homology

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BLAST of Carg24360 vs. NCBI nr
Match: XP_022963374.1 (uncharacterized protein LOC111463600 [Cucurbita moschata] >XP_023517164.1 uncharacterized protein LOC111781002 [Cucurbita pepo subsp. pepo] >KAG6595307.1 hypothetical protein SDJN03_11860, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027317.1 hypothetical protein SDJN02_11329, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.9 bits (572), Expect = 3.5e-55
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF
Sbjct: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 117
           VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL
Sbjct: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 116

[Close]

BLAST of Carg24360 vs. NCBI nr
Match: XP_022972738.1 (uncharacterized protein LOC111471253 [Cucurbita maxima])

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF
Sbjct: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 117
           VRVPM+FPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL
Sbjct: 61  VRVPMNFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 116

[Close]

BLAST of Carg24360 vs. NCBI nr
Match: XP_038883336.1 (uncharacterized protein LOC120074319 [Benincasa hispida])

HSP 1 Score: 206.8 bits (525), Expect = 9.8e-50
Identity = 105/116 (90.52%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLR LYRRL+SRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSF +HCK+ G 
Sbjct: 1   MLRFLYRRLKSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFTAHCKSDGL 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 117
           VRVPMD PGDV+CVPD LFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD+L
Sbjct: 61  VRVPMDIPGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDAL 116

[Close]

BLAST of Carg24360 vs. NCBI nr
Match: XP_004142209.1 (uncharacterized protein LOC101207834 [Cucumis sativus] >KGN54232.1 hypothetical protein Csa_018146 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 3.2e-48
Identity = 103/114 (90.35%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLR LYRRLRSRWPLLV+SASWT+LLTLTVAAASFAPELAFASAISPSSSFA+ CK+ G 
Sbjct: 1   MLRFLYRRLRSRWPLLVFSASWTLLLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 115
           VRVPMD PGDV+CVPD LFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD
Sbjct: 61  VRVPMDIPGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 114

[Close]

BLAST of Carg24360 vs. NCBI nr
Match: KAA0032619.1 (uncharacterized protein E6C27_scaffold184G00030 [Cucumis melo var. makuwa] >TYK23500.1 uncharacterized protein E5676_scaffold500G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 102/114 (89.47%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLR LYRRLRSRWPLLV+SASWT+LLTLTVAAASFAPELAFASAISPSSSFA+ CK+ G 
Sbjct: 1   MLRFLYRRLRSRWPLLVFSASWTLLLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 115
           VRVPMD PGDV+CVPD LFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADD+
Sbjct: 61  VRVPMDIPGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDN 114

[Close]

BLAST of Carg24360 vs. ExPASy TrEMBL
Match: A0A6J1HJX3 (uncharacterized protein LOC111463600 OS=Cucurbita moschata OX=3662 GN=LOC111463600 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.7e-55
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF
Sbjct: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 117
           VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL
Sbjct: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 116

[Close]

BLAST of Carg24360 vs. ExPASy TrEMBL
Match: A0A6J1IAZ3 (uncharacterized protein LOC111471253 OS=Cucurbita maxima OX=3661 GN=LOC111471253 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.4e-55
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF
Sbjct: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 117
           VRVPM+FPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL
Sbjct: 61  VRVPMNFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDSL 116

[Close]

BLAST of Carg24360 vs. ExPASy TrEMBL
Match: A0A0A0L0V5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G294400 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.5e-48
Identity = 103/114 (90.35%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLR LYRRLRSRWPLLV+SASWT+LLTLTVAAASFAPELAFASAISPSSSFA+ CK+ G 
Sbjct: 1   MLRFLYRRLRSRWPLLVFSASWTLLLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 115
           VRVPMD PGDV+CVPD LFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD
Sbjct: 61  VRVPMDIPGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 114

[Close]

BLAST of Carg24360 vs. ExPASy TrEMBL
Match: A0A5A7STU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00020 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.8e-48
Identity = 102/114 (89.47%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGF 60
           MLR LYRRLRSRWPLLV+SASWT+LLTLTVAAASFAPELAFASAISPSSSFA+ CK+ G 
Sbjct: 1   MLRFLYRRLRSRWPLLVFSASWTLLLTLTVAAASFAPELAFASAISPSSSFAAECKSDGL 60

Query: 61  VRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 115
           VRVPMD PGDV+CVPD LFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADD+
Sbjct: 61  VRVPMDIPGDVLCVPDRLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDN 114

[Close]

BLAST of Carg24360 vs. ExPASy TrEMBL
Match: A0A6J1CRS0 (uncharacterized protein LOC111013670 OS=Momordica charantia OX=3673 GN=LOC111013670 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.3e-44
Identity = 101/120 (84.17%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKA--- 60
           MLR L+RRLRSRWPLLVYSASWTILLTLTVA ASFAPELAFASAISPSSSFA+ CKA   
Sbjct: 1   MLRFLFRRLRSRWPLLVYSASWTILLTLTVAVASFAPELAFASAISPSSSFAAQCKAGVG 60

Query: 61  ---AGFVRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDD 115
               G VRVPMD PGDV+CVPD LFRKS IDLIVPPIFAAVVVAGSAC VRA GLWADDD
Sbjct: 61  GGGGGLVRVPMDLPGDVLCVPDLLFRKSRIDLIVPPIFAAVVVAGSACVVRAFGLWADDD 120

[Close]

BLAST of Carg24360 vs. TAIR 10
Match: AT2G37530.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07795.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-25
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 0


Query: 1   MLRLLYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSS--FASHCKAA 60
           M   L  R   R P  VY A+WT+ LTLTVA  S APE AF SAI PSSS  F+  C + 
Sbjct: 5   MFSSLTHRFAWRIPHFVYGATWTLFLTLTVAIISLAPEFAFVSAIFPSSSEVFSRRCGSY 64

Query: 61  GFVRVPMDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRALGLWADDDS 116
             + VP+D P +V+C+P NLFR+S +DL+VPP+FAA+VVA SA  VR +GLW  D++
Sbjct: 65  AAILVPLDLPSEVLCLPANLFRRSKMDLVVPPVFAAIVVALSAVVVRTMGLWEADEA 121

[Close]

BLAST of Carg24360 vs. TAIR 10
Match: AT1G07795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28725.1); Has 38 Blast hits to 38 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 101.7 bits (252), Expect = 4.1e-22
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 7   RRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGFVRVPMD 66
           R +  RWP++  +A+WT+LL  TVA ASFAPE+AF S +S S          GFV++PMD
Sbjct: 14  RSVSDRWPVIAQAATWTVLLMFTVAVASFAPEMAFVSTVSSSCGGGD-----GFVKIPMD 73

Query: 67  FPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRA 107
           F G+ +CVP N+ ++S  DL VP IFAAV+V  SAC +R+
Sbjct: 74  FAGESICVPSNMVKRSRFDLFVPSIFAAVMVTASACLIRS 108

[Close]

BLAST of Carg24360 vs. TAIR 10
Match: AT2G28725.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07795.1); Has 35 Blast hits to 35 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 6.8e-17
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 5   LYRRLRSRWPLLVYSASWTILLTLTVAAASFAPELAFASAISPSSSFASHCKAAGFVRVP 64
           +  +  +RW +LV +A+WTILL +TVA ASFAPE+AF S +  SS         GFVR+P
Sbjct: 4   ILEKTSTRWEVLVQTATWTILLMITVALASFAPEMAFVSKLKSSSD--------GFVRIP 63

Query: 65  MDFPGDVVCVPDNLFRKSGIDLIVPPIFAAVVVAGSACFVRA 107
           MD PG+++ +P  + + S +D+ +P IFA V+V  S   +R+
Sbjct: 64  MDLPGEMLILPSEMVKNSYLDVFLPTIFAGVMVIASVSLLRS 97

The following BLAST results are available for this feature:

BLAST of Carg24360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963374.1	3.5e-55	100.00	uncharacterized protein LOC111463600 [Cucurbita moschata] >XP_023517164.1 unchar...	[more]
XP_022972738.1	1.3e-54	99.14	uncharacterized protein LOC111471253 [Cucurbita maxima]	[more]
XP_038883336.1	9.8e-50	90.52	uncharacterized protein LOC120074319 [Benincasa hispida]	[more]
XP_004142209.1	3.2e-48	90.35	uncharacterized protein LOC101207834 [Cucumis sativus] >KGN54232.1 hypothetical ...	[more]
KAA0032619.1	1.2e-47	89.47	uncharacterized protein E6C27_scaffold184G00030 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of Carg24360 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJX3	1.7e-55	100.00	uncharacterized protein LOC111463600 OS=Cucurbita moschata OX=3662 GN=LOC1114636...	[more]
A0A6J1IAZ3	6.4e-55	99.14	uncharacterized protein LOC111471253 OS=Cucurbita maxima OX=3661 GN=LOC111471253...	[more]
A0A0A0L0V5	1.5e-48	90.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G294400 PE=4 SV=1	[more]
A0A5A7STU5	5.8e-48	89.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CRS0	2.3e-44	84.17	uncharacterized protein LOC111013670 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Carg24360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37530.1	1.1e-25	52.99	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G07795.1	4.1e-22	50.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G28725.1	6.8e-17	43.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34658	OS01G0151800 PROTEIN	coord: 3..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24360-RA	Carg24360-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane