Carg24357 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24357
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Glycine rich RNA binding protein
Location	Carg_Chr07: 5420326 .. 5422871 (-)
RNA-Seq Expression	Carg24357
Synteny	Carg24357

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACCCTAACCCCTGAATATCATCTCTGTTGTAGTGTGGTTATTCTCTCTTCCCATCGGCCGATCAAATCAGATGGCTTTCTTCTCCACTGTGAGGCGCGTTCTTAATGGATCTTCCTCTTCTTCTTCCGTTCTTCGATCACAGTGGACTTGTTTTCGTCTCAGCTCAACTCTCACATCGCCTAAGCTCTTCATCAGTGGTACGTTTCGCAGAAAAAAAACAATCAGCTCGTAACGCCTTTTTTCTACCCCTTTGATTTTGTTAATTTCATCCATTTGGACATTGAGAATGATATGGAATTTGGTATTAGGCTCTAATTTCTGTTTGGATGCTGAGAAATTTCTGAGATTGTTGCTACCCCTTTATCTCTTATACTCAATCGATTAGTTTCGGTCGGAGGCACTAAATGGATTAATTGTTAATCGATTATGCTCTGTTCTGTTCCATTCTTTGCACTCTATTTCTGGTCTTTCTCTTCAAGTGGAAGGAAGCTTCTTTCCCTATATGAACTTGTGAAATTACTTCGCTGTTTAGTAAGTGGGGGGATTTGTTTTGGCGAATGAAATTAGAAATGTATTCCGATTTTATTTGTACCTACAAAATACGTAGATTTGTGTGCCTGCTTGATGTCTCGAACAATTCTTGCATTGGAAAGTTCCAAGAAATCTTTGCTAATTCATGTTTATGCGACTCGATATGCGCTTTGCGTTTGAAGGTTTGCTATTTGGCTGACAAACCTTGCAAGTACAATGGAGTACTAAAATTTTTTCCCTTCCCCCCACCCCATGGAAAAGCATTGATGAACCTTCTCATTTGTGGGTTTCTATTTTTTTGTCTTCTTTCAGAGGGGTTTTTTCTTAGTACTATAGTGAACCTCCATCTCTAGAATGATAAGATATTGTTCACGTTGGACATAAACGCTCATCACACTACTTTTGGCTTTTCCAAAATGACTTATACCAATGAAGATAATTATAACGGCTCAAGCCCACTGCTAGCAAATATTGTTCTCTTTATTTTCCTCTTTCGGCTTTCTCTCAAGGTTTTTAAAACGTGTCTATTAGGGAGAGGTTTCCACTCCCATACAAGACAATTTGGTCGAGTGGTCTAAGGTGCACCTTCCTTTTCGGTGGCTCAATCTTAAAAACTCCAAAGTTAAACGTGTTTTGTTTGGAACAATTCTATGTTGGACGGTTACGCTTGGTATTAGAGCTAGACATTGAGCGATGCCAACAAGGAGGTTGAGCCTTGAAGAGGGGTGGACACGAGACGGTGTGCGAGTAAGGACGCTGGGTCCTGAAGGGGGGGTGAATTGGGGGATCCCACTTCGATTGGAAGAGGGAACGAGTGCCAGTGAGGATGCTAGACCCCGAAGGGGGTGGATTATGAAATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCATTTTAAAAACTTTGAGACGATACCCGAAACCTCTCCCTAGCAGACGTGTTTTAAAAACCTTCAGACGATTCCCGGAACTTCTCCCTAGCGGTGGACTTGGACCGTTACAATAATTGTCCTCTCTTATATATCCATGACCACTCTCTTCCTTGGCCAATGGGGAAGTTTGTTTCCTATCCTAACTGTTCTTATCCTTTCTTCACAATTTGAATATTAGTAAGTGATGTATTAGATATGTTTCATTGGTCTACACTTTTCTTAAATGTTGTTGTTATGGTAAACAAGTAGTTTAAAAATTATAGTAATAGAAAATTTTCTTGTTATGGTTGGATATTGAATGACCTCCACATGATGTCTTTCATAATCTAATATTCTTTATGAACTTGCATCAGCCTAAGTTTTGATTTGTGGCTGAGCCATGATGAACTGTTTGACCTGTTTTGGATTGGTTTCATTCTTATAAAATGCACAGGTCTTTCAAGATTAACAACAGACGAGAAGCTCCAGGAAGCCTTTACTTCCTTCGGTCAGCTTGTAGAAGGTCCAACTCTCTCTCCCTCTCTCAAATTTACAATTCCATGAACATCTGTTGCAGAGTACTCCATGTTGACATTGCCTCAACATTTGTACAGCGAAAGTTATAACCGATAGGGCAACGGGAAGATCAAAGGGGTTCGGGTTTGTAACGTACAGTACAATAGAAGAGGCTGAGAAAGCAAGAGAAGGAATGAACGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCGCCTCCTCCACAGCCTCAATCTGCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGTTGATTGATTGATTGCCTGCAAAATCTATATGAAACTTCATATGATTTTGGTCATTTTTTCATATTGTTCATCATCCATGGGTAGTGTAGTATAGATAAGTTTCATGAGACAATACCTTAGGAGCCTGAAAAGGGTAAAATTTTGTTATATGTATGGATTCAGAAAGAGGGGAAAGGAGCTTTTCATTAAATTTAAACATATTTAATTATTA

mRNA sequence

AAAAACCCTAACCCCTGAATATCATCTCTGTTGTAGTGTGGTTATTCTCTCTTCCCATCGGCCGATCAAATCAGATGGCTTTCTTCTCCACTGTGAGGCGCGTTCTTAATGGATCTTCCTCTTCTTCTTCCGTTCTTCGATCACAGTGGACTTGTTTTCGTCTCAGCTCAACTCTCACATCGCCTAAGCTCTTCATCAGTGGTCTTTCAAGATTAACAACAGACGAGAAGCTCCAGGAAGCCTTTACTTCCTTCGGTCAGCTTGTAGAAGCGAAAGTTATAACCGATAGGGCAACGGGAAGATCAAAGGGGTTCGGGTTTGTAACGTACAGTACAATAGAAGAGGCTGAGAAAGCAAGAGAAGGAATGAACGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCGCCTCCTCCACAGCCTCAATCTGCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGTTGATTGATTGATTGCCTGCAAAATCTATATGAAACTTCATATGATTTTGGTCATTTTTTCATATTGTTCATCATCCATGGGTAGTGTAGTATAGATAAGTTTCATGAGACAATACCTTAGGAGCCTGAAAAGGGTAAAATTTTGTTATATGTATGGATTCAGAAAGAGGGGAAAGGAGCTTTTCATTAAATTTAAACATATTTAATTATTA

Coding sequence (CDS)

ATGGCTTTCTTCTCCACTGTGAGGCGCGTTCTTAATGGATCTTCCTCTTCTTCTTCCGTTCTTCGATCACAGTGGACTTGTTTTCGTCTCAGCTCAACTCTCACATCGCCTAAGCTCTTCATCAGTGGTCTTTCAAGATTAACAACAGACGAGAAGCTCCAGGAAGCCTTTACTTCCTTCGGTCAGCTTGTAGAAGCGAAAGTTATAACCGATAGGGCAACGGGAAGATCAAAGGGGTTCGGGTTTGTAACGTACAGTACAATAGAAGAGGCTGAGAAAGCAAGAGAAGGAATGAACGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCGCCTCCTCCACAGCCTCAATCTGCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGTTGA

Protein sequence

MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG

Homology

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BLAST of Carg24357 vs. NCBI nr
Match: XP_022962832.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita moschata] >KAG6595304.1 Organelle RRM domain-containing protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027314.1 Organelle RRM domain-containing protein 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60
           MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPQPQSAETSEFGIRTNKTIGWCG 146
           PPPQPQSAETSEFGIRTNKTIGWCG
Sbjct: 121 PPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Carg24357 vs. NCBI nr
Match: XP_023517167.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.8 bits (730), Expect = 2.1e-73
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60
           MAFFSTVRRVLNGSSSSSSVLRSQWT FRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPQPQSAETSEFGIRTNKTIGWCG 146
           PPPQPQSAETSEFGIRTNKTIGWCG
Sbjct: 121 PPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Carg24357 vs. NCBI nr
Match: XP_022972736.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 281.2 bits (718), Expect = 5.1e-72
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60
           MAFFSTVRRVLNGSSSSSSVLRSQWT FRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR- 120
           GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPPQPQSAETSEFGIRTNKTIGWCG 146
           PPPPQPQSAETSEFGIRTNKTIGWCG
Sbjct: 121 PPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Carg24357 vs. NCBI nr
Match: XP_022143719.1 (organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 134/147 (91.16%), Postives = 140/147 (95.24%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSS--SSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFT 60
           MAF S+VRRVLNGSSSS  SS+L+SQWT  RLSSTLTSPKLFISGLSRLTTDEKLQEAF+
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPPQPQSAETSEFGIRTNKTIGWCG 146
           R PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 R-PPPQPQS-ETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Carg24357 vs. NCBI nr
Match: XP_031739912.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8649523.1 hypothetical protein Csa_018111 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 4.3e-63
Identity = 132/148 (89.19%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MAFFSTVRRVLNG---SSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAF 60
           MAFFSTVRRVLNG   SSSSSS+LRSQW   RLSSTLTSPKLFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60

Query: 61  TSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 120
           +SFGQLV+AKV+TDRATGRSKGF FVTYSTI+EAEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPPQPQSAETSEFGIRTNKTIGWCG 146
           PR PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 PR-PPPQPQS-ETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Carg24357 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-21
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 36  SPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAR 95
           S  LF+SGLS+ TT E L+ AF  FG++ +AKV+TDR +G SKGFGFV Y+T+E++ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 96  EGMNAKFLDGWVIFVDPAKPREPRPPPPQPQS 128
            GM+ KFLDGWVIF + A+PRE +    QPQ+
Sbjct: 115 AGMDGKFLDGWVIFAEYARPRE-QSQSYQPQN 145

[Close]

BLAST of Carg24357 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-16
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 17  SSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGR 76
           S  ++ S  +CF       + KLFI GLS  TT++ L EAF+  GQ+VEA+++ DR + R
Sbjct: 14  SVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDR 73

Query: 77  SKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 118
           SKGFGFVT+++ +EA+KA    N + L+G  IFVD AK ++
Sbjct: 74  SKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQ 114

[Close]

BLAST of Carg24357 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-16
Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 0


Query: 8   RRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAK 67
           RR + G   SS +     +    SS+    KL++SGLS  TT++ L++ F  FG L+   
Sbjct: 48  RRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMN 107

Query: 68  VITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPR------EPRPP 127
           ++ D+   R KGF F+ Y T EEA KA +GM+ KFLDG VIFV+ AK R      +PR  
Sbjct: 108 MVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRD 167

[Close]

BLAST of Carg24357 vs. ExPASy Swiss-Prot
Match: Q9FZ84 (Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG6 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-15
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 33  TLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAE 92
           +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A 
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91

Query: 93  KAREGMNAKFLDGWVIFVDPA 114
            A + M  K LDG +I V PA
Sbjct: 92  NAMQAMQNKELDGRIIGVHPA 112

[Close]

BLAST of Carg24357 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.0e-15
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 38  KLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREG 97
           + F+ GL+  T +E L++AF +FGQ++++KVITDR TGRS+GFGFVT+S+ +    A E 
Sbjct: 9   RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68

Query: 98  MNAKFLDGWVIFVDPAKPR 117
           MN K LDG  I V+ A+ R
Sbjct: 69  MNGKELDGRNITVNQAQSR 87

[Close]

BLAST of Carg24357 vs. ExPASy TrEMBL
Match: A0A6J1HDN1 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111463207 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.0e-75
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60
           MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPQPQSAETSEFGIRTNKTIGWCG 146
           PPPQPQSAETSEFGIRTNKTIGWCG
Sbjct: 121 PPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Carg24357 vs. ExPASy TrEMBL
Match: A0A6J1I6S8 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471250 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.5e-72
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60
           MAFFSTVRRVLNGSSSSSSVLRSQWT FRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR- 120
           GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPPQPQSAETSEFGIRTNKTIGWCG 146
           PPPPQPQSAETSEFGIRTNKTIGWCG
Sbjct: 121 PPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Carg24357 vs. ExPASy TrEMBL
Match: A0A6J1CQ59 (organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013559 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.5e-65
Identity = 134/147 (91.16%), Postives = 140/147 (95.24%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSS--SSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFT 60
           MAF S+VRRVLNGSSSS  SS+L+SQWT  RLSSTLTSPKLFISGLSRLTTDEKLQEAF+
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPPQPQSAETSEFGIRTNKTIGWCG 146
           R PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 R-PPPQPQS-ETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Carg24357 vs. ExPASy TrEMBL
Match: A0A1S3BHV3 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490031 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.4e-62
Identity = 130/147 (88.44%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGS--SSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFT 60
           MAFFSTVRRVL+GS  SSSSS+LRSQW   RLSSTLTSPKLFISGLSRLTTDEKL+EAF+
Sbjct: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLV+AKV+TDRATGRSKGF FVTYSTIEEAE+AR+ MNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPPQPQSAETSEFGIRTNKTIGWCG 146
           R PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 R-PPPQPQS-ETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Carg24357 vs. ExPASy TrEMBL
Match: A0A2I4DKH7 (organelle RRM domain-containing protein 2, mitochondrial OS=Juglans regia OX=51240 GN=LOC108981026 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 7.2e-56
Identity = 112/145 (77.24%), Postives = 130/145 (89.66%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60
           MAF S++RR+L+GSS++SS+L SQ+   RL++TLTSPKLFISGLSRLTTDEKL+EAF+ F
Sbjct: 1   MAFVSSIRRLLSGSSTASSILHSQYASIRLNTTLTSPKLFISGLSRLTTDEKLKEAFSPF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQL++AKVI DRATGRSKGFGFVTY +IEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GQLLDAKVIADRATGRSKGFGFVTYKSIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPQPQSAETSEFGIRTNKTIGWCG 146
           PP   Q  E+S+ G RTNKT+GWCG
Sbjct: 121 PPQPLQ--ESSDMGFRTNKTVGWCG 143

[Close]

BLAST of Carg24357 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-49
Identity = 100/144 (69.44%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60
           MAF S+ RR++ G   SSS+L S   C R  STLTSP+LF+SGLSRLTT+EKLQ+AF SF
Sbjct: 1   MAFVSSFRRLVAG---SSSLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQLV+A+VITDR +GRSKGFGFVTY+TIE+AEKA+  MNAKFLDGWVIFVDPA+PREPR 
Sbjct: 61  GQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRR 120

Query: 121 PPPQPQSAETSEFGIRTNKTIGWC 145
           P  Q     +SE G  TNKTIGWC
Sbjct: 121 PLQQEPLRPSSESGFTTNKTIGWC 141

[Close]

BLAST of Carg24357 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-22
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 36  SPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAR 95
           S  LF+SGLS+ TT E L+ AF  FG++ +AKV+TDR +G SKGFGFV Y+T+E++ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 96  EGMNAKFLDGWVIFVDPAKPREPRPPPPQPQS 128
            GM+ KFLDGWVIF + A+PRE +    QPQ+
Sbjct: 115 AGMDGKFLDGWVIFAEYARPRE-QSQSYQPQN 145

[Close]

BLAST of Carg24357 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 87.8 bits (216), Expect = 7.7e-18
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 17  SSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGR 76
           S  ++ S  +CF       + KLFI GLS  TT++ L EAF+  GQ+VEA+++ DR + R
Sbjct: 14  SVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDR 73

Query: 77  SKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 118
           SKGFGFVT+++ +EA+KA    N + L+G  IFVD AK ++
Sbjct: 74  SKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQ 114

[Close]

BLAST of Carg24357 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-17
Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 0


Query: 8   RRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAK 67
           RR + G   SS +     +    SS+    KL++SGLS  TT++ L++ F  FG L+   
Sbjct: 48  RRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMN 107

Query: 68  VITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPR------EPRPP 127
           ++ D+   R KGF F+ Y T EEA KA +GM+ KFLDG VIFV+ AK R      +PR  
Sbjct: 108 MVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRD 167

[Close]

BLAST of Carg24357 vs. TAIR 10
Match: AT1G18630.1 (glycine-rich RNA-binding protein 6 )

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-16
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 33  TLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAE 92
           +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A 
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91

Query: 93  KAREGMNAKFLDGWVIFVDPA 114
            A + M  K LDG +I V PA
Sbjct: 92  NAMQAMQNKELDGRIIGVHPA 112

The following BLAST results are available for this feature:

BLAST of Carg24357 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962832.1	1.4e-74	100.00	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita moschata] >K...	[more]
XP_023517167.1	2.1e-73	99.31	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. ...	[more]
XP_022972736.1	5.1e-72	98.63	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima]	[more]
XP_022143719.1	1.8e-64	91.16	organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]	[more]
XP_031739912.1	4.3e-63	89.19	organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8...	[more]

BLAST of Carg24357 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	1.5e-21	55.43	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FFZ6	1.1e-16	45.54	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9FX45	1.9e-16	42.06	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FZ84	2.7e-15	53.09	Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q99070	6.0e-15	50.63	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]

BLAST of Carg24357 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HDN1	7.0e-75	100.00	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata O...	[more]
A0A6J1I6S8	2.5e-72	98.63	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=...	[more]
A0A6J1CQ59	8.5e-65	91.16	organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia ...	[more]
A0A1S3BHV3	1.4e-62	88.44	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A2I4DKH7	7.2e-56	77.24	organelle RRM domain-containing protein 2, mitochondrial OS=Juglans regia OX=512...	[more]

BLAST of Carg24357 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37510.1	2.2e-49	69.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	1.0e-22	55.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	7.7e-18	45.54	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	1.3e-17	42.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G18630.1	1.9e-16	53.09	glycine-rich RNA-binding protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 38..111 e-value: 2.9E-25 score: 100.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 39..105 e-value: 1.9E-19 score: 69.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 37..115 score: 18.256838
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 29..140 e-value: 3.6E-27 score: 97.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..134
None	No IPR available	PANTHER	PTHR15241:SF282	GLYCINE-RICH RNA-BINDING PROTEIN 6, MITOCHONDRIAL	coord: 1..145
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..145
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 36..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24357-RA	Carg24357-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding