Carg24327 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24327
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-type E3 ubiquitin transferase
Location	Carg_Chr20: 10177695 .. 10178342 (+)
RNA-Seq Expression	Carg24327
Synteny	Carg24327

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCTGTTTCCATTTCTTCACCTCATCAGCTCATTCACCATGGAGATCAAGTGTTCTATTATTCAAGAAAGCTCCTCCTTCACTCCTCCCTCCACGCGCTCACCTTCACCGCCGACGCTCCCTCCTCCGTCCTACACCGCCCACTCGAATCCTACACCTTCGATACCAATGTCGTCATGGTCCTCTCCGTCCTCCTCTGCGCCTTAATTTGCTCATTAGGTCTCAACTCCATCATCAGATGCGCTTTGAAATGCTCTCGTTTTGTTGTCTCTGACGAAACTCACCCCTCCTCCACCACCGCCGCCCCCGTCGGAGTCCACAAGAAAGCCATCAAGAGCTTCACTATGGTTCAATTCTCCTCGGATCTCAATCTCCCTGGGCTTGACTCCGAGTGCGTTATTTGCTTGTCAGACTTCGTCGATGGCGAGAAGCTTCGGCTTCTCCCCAAGTGCAACCATGGCTTCCATGTTAAGTGTATTGATAAATGGTTGAGTTCTCACTCCTCTTGCCCTAAATGTCGCCAGTGTTTAGTCCAAACTTCTCAGAAAATCGCCGGGGTTAGCGGTCCGGCGTCTCCTCCTCCTCCGGCCATCAACTTAGCACCGCTAGATCCCGAAGCTCGGGTACGGAATTTATGGCTGTAA

mRNA sequence

ATGTCGGCTGTTTCCATTTCTTCACCTCATCAGCTCATTCACCATGGAGATCAAGTGTTCTATTATTCAAGAAAGCTCCTCCTTCACTCCTCCCTCCACGCGCTCACCTTCACCGCCGACGCTCCCTCCTCCGTCCTACACCGCCCACTCGAATCCTACACCTTCGATACCAATGTCGTCATGGTCCTCTCCGTCCTCCTCTGCGCCTTAATTTGCTCATTAGGTCTCAACTCCATCATCAGATGCGCTTTGAAATGCTCTCGTTTTGTTGTCTCTGACGAAACTCACCCCTCCTCCACCACCGCCGCCCCCGTCGGAGTCCACAAGAAAGCCATCAAGAGCTTCACTATGGTTCAATTCTCCTCGGATCTCAATCTCCCTGGGCTTGACTCCGAGTGCGTTATTTGCTTGTCAGACTTCGTCGATGGCGAGAAGCTTCGGCTTCTCCCCAAGTGCAACCATGGCTTCCATGTTAAGTGTATTGATAAATGGTTGAGTTCTCACTCCTCTTGCCCTAAATGTCGCCAGTGTTTAGTCCAAACTTCTCAGAAAATCGCCGGGGTTAGCGGTCCGGCGTCTCCTCCTCCTCCGGCCATCAACTTAGCACCGCTAGATCCCGAAGCTCGGGTACGGAATTTATGGCTGTAA

Coding sequence (CDS)

ATGTCGGCTGTTTCCATTTCTTCACCTCATCAGCTCATTCACCATGGAGATCAAGTGTTCTATTATTCAAGAAAGCTCCTCCTTCACTCCTCCCTCCACGCGCTCACCTTCACCGCCGACGCTCCCTCCTCCGTCCTACACCGCCCACTCGAATCCTACACCTTCGATACCAATGTCGTCATGGTCCTCTCCGTCCTCCTCTGCGCCTTAATTTGCTCATTAGGTCTCAACTCCATCATCAGATGCGCTTTGAAATGCTCTCGTTTTGTTGTCTCTGACGAAACTCACCCCTCCTCCACCACCGCCGCCCCCGTCGGAGTCCACAAGAAAGCCATCAAGAGCTTCACTATGGTTCAATTCTCCTCGGATCTCAATCTCCCTGGGCTTGACTCCGAGTGCGTTATTTGCTTGTCAGACTTCGTCGATGGCGAGAAGCTTCGGCTTCTCCCCAAGTGCAACCATGGCTTCCATGTTAAGTGTATTGATAAATGGTTGAGTTCTCACTCCTCTTGCCCTAAATGTCGCCAGTGTTTAGTCCAAACTTCTCAGAAAATCGCCGGGGTTAGCGGTCCGGCGTCTCCTCCTCCTCCGGCCATCAACTTAGCACCGCTAGATCCCGAAGCTCGGGTACGGAATTTATGGCTGTAA

Protein sequence

MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVVMVLSVLLCALICSLGLNSIIRCALKCSRFVVSDETHPSSTTAAPVGVHKKAIKSFTMVQFSSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTSQKIAGVSGPASPPPPAINLAPLDPEARVRNLWL

Homology

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BLAST of Carg24327 vs. NCBI nr
Match: KAG6571357.1 (RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011129.1 RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 436.8 bits (1122), Expect = 1.1e-118
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVV 60
           MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVV
Sbjct: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVV 60

Query: 61  MVLSVLLCALICSLGLNSIIRCALKCSRFVVSDETHPSSTTAAPVGVHKKAIKSFTMVQF 120
           MVLSVLLCALICSLGLNSIIRCALKCSRFVVSDETHPSSTTAAPVGVHKKAIKSFTMVQF
Sbjct: 61  MVLSVLLCALICSLGLNSIIRCALKCSRFVVSDETHPSSTTAAPVGVHKKAIKSFTMVQF 120

Query: 121 SSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ 180
           SSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ
Sbjct: 121 SSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ 180

Query: 181 TSQKIAGVSGPASPPPPAINLAPLDPEARVRNLWL 216
           TSQKIAGVSGPASPPPPAINLAPLDPEARVRNLWL
Sbjct: 181 TSQKIAGVSGPASPPPPAINLAPLDPEARVRNLWL 215

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BLAST of Carg24327 vs. NCBI nr
Match: XP_022927999.1 (RING-H2 finger protein ATL78-like [Cucurbita moschata])

HSP 1 Score: 432.6 bits (1111), Expect = 2.0e-117
Identity = 212/215 (98.60%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVV 60
           MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVV
Sbjct: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVV 60

Query: 61  MVLSVLLCALICSLGLNSIIRCALKCSRFVVSDETHPSSTTAAPVGVHKKAIKSFTMVQF 120
           MVLSVLLCALICSLGLNSIIRCALKCSRFVVSD+THPSSTTAAPVGVHKKAIKSFTMVQF
Sbjct: 61  MVLSVLLCALICSLGLNSIIRCALKCSRFVVSDDTHPSSTTAAPVGVHKKAIKSFTMVQF 120

Query: 121 SSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ 180
           SSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ
Sbjct: 121 SSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ 180

Query: 181 TSQKIAGVSGPASPPPPAINLAPLDPEARVRNLWL 216
           TSQKIAGV GP SPPPPAINLAPLDPEARVRNLWL
Sbjct: 181 TSQKIAGVGGPTSPPPPAINLAPLDPEARVRNLWL 215

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BLAST of Carg24327 vs. NCBI nr
Match: XP_023512393.1 (RING-H2 finger protein ATL78-like [Cucurbita pepo subsp. pepo] >XP_023522416.1 RING-H2 finger protein ATL78-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 428.7 bits (1101), Expect = 2.9e-116
Identity = 210/215 (97.67%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVV 60
           MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVV
Sbjct: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVV 60

Query: 61  MVLSVLLCALICSLGLNSIIRCALKCSRFVVSDETHPSSTTAAPVGVHKKAIKSFTMVQF 120
           MVLSVLLCALICSLGLNSIIRCALKCSRFVVSD+ HPSSTT+APVGVHKKAIKSFTMVQF
Sbjct: 61  MVLSVLLCALICSLGLNSIIRCALKCSRFVVSDDPHPSSTTSAPVGVHKKAIKSFTMVQF 120

Query: 121 SSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ 180
           S DLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ
Sbjct: 121 SPDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ 180

Query: 181 TSQKIAGVSGPASPPPPAINLAPLDPEARVRNLWL 216
           TSQKIAGVSGPASPPPPAINL PLDPEARVRNLWL
Sbjct: 181 TSQKIAGVSGPASPPPPAINLTPLDPEARVRNLWL 215

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BLAST of Carg24327 vs. NCBI nr
Match: XP_022971702.1 (RING-H2 finger protein ATL78-like [Cucurbita maxima])

HSP 1 Score: 416.0 bits (1068), Expect = 2.0e-112
Identity = 202/215 (93.95%), Postives = 207/215 (96.28%), Query Frame = 0


Query: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVV 60
           MSA SISSPHQLIHHGDQVFYYSRKLLLHSSL  L+FTADAPSSVLHRPLESYTFDTNVV
Sbjct: 1   MSAASISSPHQLIHHGDQVFYYSRKLLLHSSLRTLSFTADAPSSVLHRPLESYTFDTNVV 60

Query: 61  MVLSVLLCALICSLGLNSIIRCALKCSRFVVSDETHPSSTTAAPVGVHKKAIKSFTMVQF 120
           MVLSVLLCALICSLGLNSIIRCALKCSRFVVSD+ HPSS T+AP+GVHKKAIKSFTMVQF
Sbjct: 61  MVLSVLLCALICSLGLNSIIRCALKCSRFVVSDDPHPSSNTSAPIGVHKKAIKSFTMVQF 120

Query: 121 SSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ 180
           + DLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ
Sbjct: 121 TPDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ 180

Query: 181 TSQKIAGVSGPASPPPPAINLAPLDPEARVRNLWL 216
           TSQKIAGV GP SPPPPAINLAPLDPEARVRNLWL
Sbjct: 181 TSQKIAGVGGPTSPPPPAINLAPLDPEARVRNLWL 215

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BLAST of Carg24327 vs. NCBI nr
Match: XP_038901957.1 (RING-H2 finger protein ATL78-like [Benincasa hispida])

HSP 1 Score: 302.0 bits (772), Expect = 4.2e-78
Identity = 167/226 (73.89%), Postives = 180/226 (79.65%), Query Frame = 0


Query: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESY------- 60
           MSA SIS+ H       + F+YSRKLLLH SLH L+FTA APS+ LH   E Y       
Sbjct: 1   MSAASISTSHY------EEFHYSRKLLLHPSLHKLSFTAAAPST-LHDQSEFYSGSSSGD 60

Query: 61  -TFDTNVVMVLSVLLCALICSLGLNSIIRCALKCSRFVVSDETHPSSTTA-APVGVHKKA 120
            TFDTNVVMVLSVLLCALICSLGLNSIIRCALKCSRFV+SD+   SS+TA A  GVHKKA
Sbjct: 61  TTFDTNVVMVLSVLLCALICSLGLNSIIRCALKCSRFVISDDGRRSSSTAPASTGVHKKA 120

Query: 121 IKSFTMVQFSSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSC 180
           IKSFT+VQFS +LNLPGLDSECVICLSDF  GEKLRLLPKCNHGFHVKCIDKWLSSHSSC
Sbjct: 121 IKSFTVVQFSPNLNLPGLDSECVICLSDFAAGEKLRLLPKCNHGFHVKCIDKWLSSHSSC 180

Query: 181 PKCRQCLVQTSQKIAGV-SGPASPPPPA-INLAPLDPEARVRNLWL 216
           PKCRQCLV T QKIAGV +   SPPPPA + +APLD EA VRNL L
Sbjct: 181 PKCRQCLVHTCQKIAGVATASGSPPPPAVVGIAPLDHEAPVRNLRL 219

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BLAST of Carg24327 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.3e-50
Identity = 112/200 (56.00%), Postives = 139/200 (69.50%), Query Frame = 0


Query: 22  YSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVVMVLSVLLCALICSLGLNSIIR 81
           YSRKLL H+   + T    APS      +    FD NVVMVLSVLLCAL+CSLGLNSIIR
Sbjct: 26  YSRKLLFHTHDQSPT---PAPSPY----VGDNNFDANVVMVLSVLLCALVCSLGLNSIIR 85

Query: 82  CALKCSRFVVSD---ETHPSSTTAAPVGVHKKAIKSFTMVQFSSDLNLPGLDSECVICLS 141
           CAL+CS  V S+   + +P   T    GV +KA+KSF  V +S++LNLPGLD+EC ICLS
Sbjct: 86  CALRCSNLVPSEAGGDNYPVRLT--NTGVKRKALKSFQTVSYSTELNLPGLDTECAICLS 145

Query: 142 DFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTSQKIAGVSGPAS----- 201
           +FV  E+++LLP C+HGFHV+CIDKWLSSHSSCP CR CL+QT +KIA  S  +S     
Sbjct: 146 EFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNSTQ 205

Query: 202 PPPPAI--NLAPLDPEARVR 212
           PP  +I   +APL+PE  +R
Sbjct: 206 PPQDSIILQIAPLEPERWIR 216

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BLAST of Carg24327 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.7e-45
Identity = 104/221 (47.06%), Postives = 141/221 (63.80%), Query Frame = 0


Query: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSL--HALTFTADAPSSVLHRPLESYTFDTN 60
           MSA  + +  Q +       + +RKLLLH     ++L   A APS ++           N
Sbjct: 1   MSANELPASAQSLQEQFLGSFVTRKLLLHDPFDHNSLRVFAVAPSPLI---THENNLKGN 60

Query: 61  VVMVLSVLLCALICSLGLNSIIRCAL-KCSRFVVSDETHPSST--TAAPVGVHKKAIKSF 120
           V+M+LSVL+C +IC LGL+ IIRCA  + SRF++S+     ST  +++  G+ KKA++ F
Sbjct: 61  VLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSSNKGIKKKALRMF 120

Query: 121 TMVQFSSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCR 180
            +V +S ++NLPG+  ECVICLSDFV GE+LRLLPKCNHGFHV+CIDKWL  H +CPKCR
Sbjct: 121 PVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCR 180

Query: 181 QCLVQTSQKIAG----VSGPASPPPPA--INLAPLDPEARV 211
            CLV+T QKI G        AS P  +  + + PL+PE RV
Sbjct: 181 HCLVETCQKILGDFSQADSMASTPTESVIVRIDPLEPEGRV 218

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BLAST of Carg24327 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.1e-44
Identity = 107/217 (49.31%), Postives = 138/217 (63.59%), Query Frame = 0


Query: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESY--TFDTN 60
           MSA  + S  Q         + SRKLLLH+     T  A A   V   PL ++      N
Sbjct: 1   MSANELPSSAQAFQEQFLGGFVSRKLLLHNPFDHNTQRAFA---VAPSPLITHENNLSGN 60

Query: 61  VVMVLSVLLCALICSLGLNSIIRCALKCS-RFVVSDETHPSSTT--AAPVGVHKKAIKSF 120
           V+M+LS+L+C +IC LGL+ IIRCAL+ S RF++S+     S+T  ++  G+ KKA++ F
Sbjct: 61  VMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMF 120

Query: 121 TMVQFSSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCR 180
            +V +S ++NLPGLD ECVICLSDFV GE+LRLLPKCNHGFHV+CIDKWL  H +CPKCR
Sbjct: 121 PVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCR 180

Query: 181 QCLVQTSQKIAG-----VSGPASPPPPAI-NLAPLDP 207
            CLV+T QKI G      S  A P    I  + PL+P
Sbjct: 181 NCLVETCQKILGDFSQADSVTAEPTEIVIVTIVPLEP 214

[Close]

BLAST of Carg24327 vs. ExPASy Swiss-Prot
Match: Q94BY6 (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 9.1e-44
Identity = 101/204 (49.51%), Postives = 135/204 (66.18%), Query Frame = 0


Query: 21  YYSRKLLLHSSLHALTFTADAPSSVLHRPLESY--TFDTNVVMVLSVLLCALICSLGLNS 80
           + SRKLLLH+     T  A A   V   PL ++      NV+M+LSVL+C +IC LGL+ 
Sbjct: 22  FVSRKLLLHNPFDHNTQRAFA---VAPSPLITHENNLSGNVLMLLSVLICGIICCLGLHY 81

Query: 81  IIRCAL-KCSRFVVSDETHPSSTT--AAPVGVHKKAIKSFTMVQFSSDLNLPGLDSECVI 140
           IIRCA  + S F++S+     ST   ++  G++KKA++ F +V +S ++NLPGL  ECVI
Sbjct: 82  IIRCAFRRTSSFMISEPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEECVI 141

Query: 141 CLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTSQKIAGVSGPA--- 200
           CLSDFV GE++R+LPKC+HGFHV+CIDKWL  H +CPKCR CLV+T QKI G    A   
Sbjct: 142 CLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLVETCQKILGDFSQADQV 201

Query: 201 SPPPPA---INLAPLDPEARVRNL 214
           +  P A   + +APL+PE RV  L
Sbjct: 202 AATPTASVIVRIAPLEPEGRVNIL 222

[Close]

BLAST of Carg24327 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.9e-41
Identity = 96/200 (48.00%), Postives = 127/200 (63.50%), Query Frame = 0


Query: 21  YYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVVMVLSVLLCALICSLGLNSII 80
           + SRKL     L  + F  +A  +  H P +      NV+M+LS+LLC +ICSLGL+ II
Sbjct: 22  FVSRKL-----LQQIPFAHNAQQA--HVP-DKNNLSGNVLMLLSILLCGIICSLGLHYII 81

Query: 81  RCALKCSR-FVVSDETHPSST---TAAPVGVHKKAIKSFTMVQFSSDLNLPGLDSECVIC 140
           RCA   SR F++SD     ST   ++   G+ KKA+K   +V +S ++NLPG+  ECVIC
Sbjct: 82  RCAFIRSRSFMISDPISIPSTPRDSSVNKGIKKKALKMLPVVNYSPEINLPGVGEECVIC 141

Query: 141 LSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTSQKIAGVSGPASPPP 200
           LSDFV GE+LR+LPKCNHGFH++CIDKWL+ H +CPKCR CLV T QK+      A    
Sbjct: 142 LSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCLVDTCQKVLSDCDAADQVA 201

Query: 201 PA------INLAPLDPEARV 211
                   I ++PL+PEARV
Sbjct: 202 ATATESIDIRISPLEPEARV 213

[Close]

BLAST of Carg24327 vs. ExPASy TrEMBL
Match: A0A6J1EJK6 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111434900 PE=3 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 9.9e-118
Identity = 212/215 (98.60%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVV 60
           MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVV
Sbjct: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVV 60

Query: 61  MVLSVLLCALICSLGLNSIIRCALKCSRFVVSDETHPSSTTAAPVGVHKKAIKSFTMVQF 120
           MVLSVLLCALICSLGLNSIIRCALKCSRFVVSD+THPSSTTAAPVGVHKKAIKSFTMVQF
Sbjct: 61  MVLSVLLCALICSLGLNSIIRCALKCSRFVVSDDTHPSSTTAAPVGVHKKAIKSFTMVQF 120

Query: 121 SSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ 180
           SSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ
Sbjct: 121 SSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ 180

Query: 181 TSQKIAGVSGPASPPPPAINLAPLDPEARVRNLWL 216
           TSQKIAGV GP SPPPPAINLAPLDPEARVRNLWL
Sbjct: 181 TSQKIAGVGGPTSPPPPAINLAPLDPEARVRNLWL 215

[Close]

BLAST of Carg24327 vs. ExPASy TrEMBL
Match: A0A6J1I2P6 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111470371 PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 9.6e-113
Identity = 202/215 (93.95%), Postives = 207/215 (96.28%), Query Frame = 0


Query: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVV 60
           MSA SISSPHQLIHHGDQVFYYSRKLLLHSSL  L+FTADAPSSVLHRPLESYTFDTNVV
Sbjct: 1   MSAASISSPHQLIHHGDQVFYYSRKLLLHSSLRTLSFTADAPSSVLHRPLESYTFDTNVV 60

Query: 61  MVLSVLLCALICSLGLNSIIRCALKCSRFVVSDETHPSSTTAAPVGVHKKAIKSFTMVQF 120
           MVLSVLLCALICSLGLNSIIRCALKCSRFVVSD+ HPSS T+AP+GVHKKAIKSFTMVQF
Sbjct: 61  MVLSVLLCALICSLGLNSIIRCALKCSRFVVSDDPHPSSNTSAPIGVHKKAIKSFTMVQF 120

Query: 121 SSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ 180
           + DLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ
Sbjct: 121 TPDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQ 180

Query: 181 TSQKIAGVSGPASPPPPAINLAPLDPEARVRNLWL 216
           TSQKIAGV GP SPPPPAINLAPLDPEARVRNLWL
Sbjct: 181 TSQKIAGVGGPTSPPPPAINLAPLDPEARVRNLWL 215

[Close]

BLAST of Carg24327 vs. ExPASy TrEMBL
Match: A0A5A7TCX2 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00810 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 3.2e-76
Identity = 164/236 (69.49%), Postives = 183/236 (77.54%), Query Frame = 0


Query: 4   VSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESY------TFDT 63
           +SI++    IHH  +VF YSRKLLLHSSLH L+FTA APS+V H   E Y      TFDT
Sbjct: 1   MSIATISTNIHH--EVFRYSRKLLLHSSLHKLSFTAAAPSAV-HDQSEFYSGGDSTTFDT 60

Query: 64  NVVMVLSVLLCALICSLGLNSIIRCALKCSRFVVSDE--THPSSTTAAPVGVHKKAIKSF 123
           NVVMVLSVLLCALICSL LNS+IRCALKCSRF+VS++   HP+ T+    GVHKKAIKSF
Sbjct: 61  NVVMVLSVLLCALICSLALNSVIRCALKCSRFLVSNDHRRHPAPTS---TGVHKKAIKSF 120

Query: 124 TMVQFSSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCR 183
           T+VQFS DLNLPGLDSECVICLS+FV G+KLRLLPKCNHGFHVKCIDKWLSSHSSCPKCR
Sbjct: 121 TVVQFSPDLNLPGLDSECVICLSEFVTGDKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCR 180

Query: 184 QCLVQTSQKIAGV--------------SGPASPPPPA--INLAPLDPEARVRNLWL 216
           QCLVQT +KIAGV              S P  PPPP+  +NLAPL+PEA VRNL L
Sbjct: 181 QCLVQTCEKIAGVIASASASSSSGHSPSPPPPPPPPSVVVNLAPLEPEAPVRNLRL 230

[Close]

BLAST of Carg24327 vs. ExPASy TrEMBL
Match: A0A1S3CDJ3 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103499651 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 3.2e-76
Identity = 164/236 (69.49%), Postives = 183/236 (77.54%), Query Frame = 0


Query: 4   VSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESY------TFDT 63
           +SI++    IHH  +VF YSRKLLLHSSLH L+FTA APS+V H   E Y      TFDT
Sbjct: 1   MSIATISTNIHH--EVFRYSRKLLLHSSLHKLSFTAAAPSAV-HDQSEFYSGGDSTTFDT 60

Query: 64  NVVMVLSVLLCALICSLGLNSIIRCALKCSRFVVSDE--THPSSTTAAPVGVHKKAIKSF 123
           NVVMVLSVLLCALICSL LNS+IRCALKCSRF+VS++   HP+ T+    GVHKKAIKSF
Sbjct: 61  NVVMVLSVLLCALICSLALNSVIRCALKCSRFLVSNDHRRHPAPTS---TGVHKKAIKSF 120

Query: 124 TMVQFSSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCR 183
           T+VQFS DLNLPGLDSECVICLS+FV G+KLRLLPKCNHGFHVKCIDKWLSSHSSCPKCR
Sbjct: 121 TVVQFSPDLNLPGLDSECVICLSEFVTGDKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCR 180

Query: 184 QCLVQTSQKIAGV--------------SGPASPPPPA--INLAPLDPEARVRNLWL 216
           QCLVQT +KIAGV              S P  PPPP+  +NLAPL+PEA VRNL L
Sbjct: 181 QCLVQTCEKIAGVIASASASSSSGHSPSPPPPPPPPSVVVNLAPLEPEAPVRNLRL 230

[Close]

BLAST of Carg24327 vs. ExPASy TrEMBL
Match: A0A0A0LQ73 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_2G301540 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 8.7e-74
Identity = 159/238 (66.81%), Postives = 178/238 (74.79%), Query Frame = 0


Query: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTF--TADAPSSVLHRPLESY----- 60
           MS  SIS+ + L     QVF+YSRKLLLHSSLH L+F  T+ AP S +H   E Y     
Sbjct: 1   MSIASIST-NYLYDELHQVFHYSRKLLLHSSLHKLSFTTTSAAPPSAVHDQSEFYSGGDS 60

Query: 61  -TFDTNVVMVLSVLLCALICSLGLNSIIRCALKCSRFVVSDETHPSSTTAAPVGVHKKAI 120
            TFDTNVVMVLSVLLCALICSL LNSIIRCALKCSR +VS++ H    T    GVHKKAI
Sbjct: 61  TTFDTNVVMVLSVLLCALICSLALNSIIRCALKCSRLIVSND-HRHRLTPTSTGVHKKAI 120

Query: 121 KSFTMVQFSSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCP 180
           KSFT+VQFS DLNLPGLD ECVICLS+F  G+KLRLLPKCNHGFHVKCIDKWLSSHSSCP
Sbjct: 121 KSFTVVQFSLDLNLPGLDPECVICLSEFATGDKLRLLPKCNHGFHVKCIDKWLSSHSSCP 180

Query: 181 KCRQCLVQTSQKIAGVS-------------GPASPPPPA--INLAPLDPEARVRNLWL 216
           KCRQCLVQT +KIAGV+              P+ PPPP+  ++LAPL+PEA VRNL L
Sbjct: 181 KCRQCLVQTCEKIAGVASASASASSSSSGHSPSPPPPPSVVVDLAPLEPEAPVRNLRL 236

[Close]

BLAST of Carg24327 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 201.1 bits (510), Expect = 9.3e-52
Identity = 112/200 (56.00%), Postives = 139/200 (69.50%), Query Frame = 0


Query: 22  YSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVVMVLSVLLCALICSLGLNSIIR 81
           YSRKLL H+   + T    APS      +    FD NVVMVLSVLLCAL+CSLGLNSIIR
Sbjct: 26  YSRKLLFHTHDQSPT---PAPSPY----VGDNNFDANVVMVLSVLLCALVCSLGLNSIIR 85

Query: 82  CALKCSRFVVSD---ETHPSSTTAAPVGVHKKAIKSFTMVQFSSDLNLPGLDSECVICLS 141
           CAL+CS  V S+   + +P   T    GV +KA+KSF  V +S++LNLPGLD+EC ICLS
Sbjct: 86  CALRCSNLVPSEAGGDNYPVRLT--NTGVKRKALKSFQTVSYSTELNLPGLDTECAICLS 145

Query: 142 DFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTSQKIAGVSGPAS----- 201
           +FV  E+++LLP C+HGFHV+CIDKWLSSHSSCP CR CL+QT +KIA  S  +S     
Sbjct: 146 EFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNSTQ 205

Query: 202 PPPPAI--NLAPLDPEARVR 212
           PP  +I   +APL+PE  +R
Sbjct: 206 PPQDSIILQIAPLEPERWIR 216

[Close]

BLAST of Carg24327 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 183.0 bits (463), Expect = 2.6e-46
Identity = 104/221 (47.06%), Postives = 141/221 (63.80%), Query Frame = 0


Query: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSL--HALTFTADAPSSVLHRPLESYTFDTN 60
           MSA  + +  Q +       + +RKLLLH     ++L   A APS ++           N
Sbjct: 1   MSANELPASAQSLQEQFLGSFVTRKLLLHDPFDHNSLRVFAVAPSPLI---THENNLKGN 60

Query: 61  VVMVLSVLLCALICSLGLNSIIRCAL-KCSRFVVSDETHPSST--TAAPVGVHKKAIKSF 120
           V+M+LSVL+C +IC LGL+ IIRCA  + SRF++S+     ST  +++  G+ KKA++ F
Sbjct: 61  VLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSSNKGIKKKALRMF 120

Query: 121 TMVQFSSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCR 180
            +V +S ++NLPG+  ECVICLSDFV GE+LRLLPKCNHGFHV+CIDKWL  H +CPKCR
Sbjct: 121 PVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCR 180

Query: 181 QCLVQTSQKIAG----VSGPASPPPPA--INLAPLDPEARV 211
            CLV+T QKI G        AS P  +  + + PL+PE RV
Sbjct: 181 HCLVETCQKILGDFSQADSMASTPTESVIVRIDPLEPEGRV 218

[Close]

BLAST of Carg24327 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 179.5 bits (454), Expect = 2.9e-45
Identity = 107/217 (49.31%), Postives = 138/217 (63.59%), Query Frame = 0


Query: 1   MSAVSISSPHQLIHHGDQVFYYSRKLLLHSSLHALTFTADAPSSVLHRPLESY--TFDTN 60
           MSA  + S  Q         + SRKLLLH+     T  A A   V   PL ++      N
Sbjct: 1   MSANELPSSAQAFQEQFLGGFVSRKLLLHNPFDHNTQRAFA---VAPSPLITHENNLSGN 60

Query: 61  VVMVLSVLLCALICSLGLNSIIRCALKCS-RFVVSDETHPSSTT--AAPVGVHKKAIKSF 120
           V+M+LS+L+C +IC LGL+ IIRCAL+ S RF++S+     S+T  ++  G+ KKA++ F
Sbjct: 61  VMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMF 120

Query: 121 TMVQFSSDLNLPGLDSECVICLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCR 180
            +V +S ++NLPGLD ECVICLSDFV GE+LRLLPKCNHGFHV+CIDKWL  H +CPKCR
Sbjct: 121 PVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCR 180

Query: 181 QCLVQTSQKIAG-----VSGPASPPPPAI-NLAPLDP 207
            CLV+T QKI G      S  A P    I  + PL+P
Sbjct: 181 NCLVETCQKILGDFSQADSVTAEPTEIVIVTIVPLEP 214

[Close]

BLAST of Carg24327 vs. TAIR 10
Match: AT1G49200.1 (RING/U-box superfamily protein )

HSP 1 Score: 178.3 bits (451), Expect = 6.5e-45
Identity = 101/204 (49.51%), Postives = 135/204 (66.18%), Query Frame = 0


Query: 21  YYSRKLLLHSSLHALTFTADAPSSVLHRPLESY--TFDTNVVMVLSVLLCALICSLGLNS 80
           + SRKLLLH+     T  A A   V   PL ++      NV+M+LSVL+C +IC LGL+ 
Sbjct: 22  FVSRKLLLHNPFDHNTQRAFA---VAPSPLITHENNLSGNVLMLLSVLICGIICCLGLHY 81

Query: 81  IIRCAL-KCSRFVVSDETHPSSTT--AAPVGVHKKAIKSFTMVQFSSDLNLPGLDSECVI 140
           IIRCA  + S F++S+     ST   ++  G++KKA++ F +V +S ++NLPGL  ECVI
Sbjct: 82  IIRCAFRRTSSFMISEPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEECVI 141

Query: 141 CLSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTSQKIAGVSGPA--- 200
           CLSDFV GE++R+LPKC+HGFHV+CIDKWL  H +CPKCR CLV+T QKI G    A   
Sbjct: 142 CLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLVETCQKILGDFSQADQV 201

Query: 201 SPPPPA---INLAPLDPEARVRNL 214
           +  P A   + +APL+PE RV  L
Sbjct: 202 AATPTASVIVRIAPLEPEGRVNIL 222

[Close]

BLAST of Carg24327 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein )

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-42
Identity = 96/200 (48.00%), Postives = 127/200 (63.50%), Query Frame = 0


Query: 21  YYSRKLLLHSSLHALTFTADAPSSVLHRPLESYTFDTNVVMVLSVLLCALICSLGLNSII 80
           + SRKL     L  + F  +A  +  H P +      NV+M+LS+LLC +ICSLGL+ II
Sbjct: 22  FVSRKL-----LQQIPFAHNAQQA--HVP-DKNNLSGNVLMLLSILLCGIICSLGLHYII 81

Query: 81  RCALKCSR-FVVSDETHPSST---TAAPVGVHKKAIKSFTMVQFSSDLNLPGLDSECVIC 140
           RCA   SR F++SD     ST   ++   G+ KKA+K   +V +S ++NLPG+  ECVIC
Sbjct: 82  RCAFIRSRSFMISDPISIPSTPRDSSVNKGIKKKALKMLPVVNYSPEINLPGVGEECVIC 141

Query: 141 LSDFVDGEKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTSQKIAGVSGPASPPP 200
           LSDFV GE+LR+LPKCNHGFH++CIDKWL+ H +CPKCR CLV T QK+      A    
Sbjct: 142 LSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCLVDTCQKVLSDCDAADQVA 201

Query: 201 PA------INLAPLDPEARV 211
                   I ++PL+PEARV
Sbjct: 202 ATATESIDIRISPLEPEARV 213

The following BLAST results are available for this feature:

BLAST of Carg24327 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571357.1	1.1e-118	100.00	RING-H2 finger protein ATL78, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022927999.1	2.0e-117	98.60	RING-H2 finger protein ATL78-like [Cucurbita moschata]	[more]
XP_023512393.1	2.9e-116	97.67	RING-H2 finger protein ATL78-like [Cucurbita pepo subsp. pepo] >XP_023522416.1 R...	[more]
XP_022971702.1	2.0e-112	93.95	RING-H2 finger protein ATL78-like [Cucurbita maxima]	[more]
XP_038901957.1	4.2e-78	73.89	RING-H2 finger protein ATL78-like [Benincasa hispida]	[more]

BLAST of Carg24327 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQG7	1.3e-50	56.00	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
Q6NML0	3.7e-45	47.06	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]
P0C034	4.1e-44	49.31	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q94BY6	9.1e-44	49.51	RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1	[more]
Q9LS99	1.9e-41	48.00	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]

BLAST of Carg24327 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJK6	9.9e-118	98.60	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111434900...	[more]
A0A6J1I2P6	9.6e-113	93.95	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111470371 P...	[more]
A0A5A7TCX2	3.2e-76	69.49	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3CDJ3	3.2e-76	69.49	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103499651 PE=3 ...	[more]
A0A0A0LQ73	8.7e-74	66.81	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_2G301540 PE...	[more]

BLAST of Carg24327 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49230.1	9.3e-52	56.00	RING/U-box superfamily protein	[more]
AT1G49210.1	2.6e-46	47.06	RING/U-box superfamily protein	[more]
AT1G49220.1	2.9e-45	49.31	RING/U-box superfamily protein	[more]
AT1G49200.1	6.5e-45	49.51	RING/U-box superfamily protein	[more]
AT3G18773.1	1.3e-42	48.00	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 133..174 e-value: 2.6E-7 score: 40.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 132..175 e-value: 3.8E-14 score: 52.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 133..175 score: 12.356501
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 92..180 e-value: 3.8E-22 score: 79.8
IPR044602	RING-H2 finger protein ATL10/ATL75-79	PANTHER	PTHR46905	RING-H2 FINGER PROTEIN ATL78	coord: 5..212
None	No IPR available	PANTHER	PTHR46905:SF7	RING-H2 FINGER PROTEIN ATL78	coord: 5..212
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 132..175 e-value: 2.17232E-16 score: 68.1055
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 111..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24327-RA	Carg24327-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity