Carg24326 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24326
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	UPF0235 protein C15orf40 homolog
Location	Carg_Chr20: 10160768 .. 10161664 (-)
RNA-Seq Expression	Carg24326
Synteny	Carg24326

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTGGAGGAAAATATTAAAAATTAAAGGGAGAAGAAAATGGCTCCGGCGAAGAAGGGGAAAACGAAAGCTCCGAAAGGTACTGAATCAATTGAATCGTGCCTCAAAACCAACAATTACCCTTCTTGTCTTCGCTCTGTTTCTTCTTCTTCTGTCGCCATTACCATCCACGCAAAGCCTGGCTCCAAGATCGCCTCTATCACAGGTATTTCTCTCTCTCCTTCGCTCTAACTCTTCCCCGTTTATGAAATTGAAGTATTATGTTTCTCGAAATCCTTGCAGACTTTGGCGATGATGCGTTGGGAGTGCAAATCGACGCACCTGCGAAAGATGGAGAAGCTAATGCTGCGCTTCTTGATTACATGAGCTCTGTGAGTTGGGCATTCTTTGCTGCTTATTATTTGATTTCGAATTGCTTTTTCATTCCTAGTACTTGAATTTTCATTGCGCCATTTAACCATTTGGCTTAAAGTTGAAATTGATTGTTTTTGTTGTTTGGGATTTTTGGTGAAGATTCCGAAAATTGGAACTGTTTTGAGCGTATTGGTCTAGCGAACGGATAATGTTGCTGTTCTTAGTTTGTTGAAAATCCGGTGTTGGATCACCCATTTGAATTTGAAGGCTGTTATTCCTGTTGCTCGAAGGATTTGAAGTCTTCTATCTACTTGCTGTGTAGTATTTTCGATCTTCGTTGTTTAAATCTTCACACATGTTGACAGTAGTAGCTATATGATTCCCAAATCAGAAAAGTTGGATGAATTACCAACAATAGCTTTTAGTTTCCTGGCAGTTTTTATGTGAGATCCCACATCGATTGAACGAATGCCAACGAGGACGCTAGGTCCCGAAGGGGTGGATTGTGAGATCCCACGTTGGTTGAAGGGGGGAACAAAGCA

mRNA sequence

ATTTTTGGAGGAAAATATTAAAAATTAAAGGGAGAAGAAAATGGCTCCGGCGAAGAAGGGGAAAACGAAAGCTCCGAAAGGTACTGAATCAATTGAATCGTGCCTCAAAACCAACAATTACCCTTCTTGTCTTCGCTCTGTTTCTTCTTCTTCTGTCGCCATTACCATCCACGCAAAGCCTGGCTCCAAGATCGCCTCTATCACAGACTTTGGCGATGATGCGTTGGGAGTGCAAATCGACGCACCTGCGAAAGATGGAGAAGCTAATGCTGCGCTTCTTGATTACATGAGCTCTGTGAGTTGGGCATTCTTTGCTGCTTATTATTTGATTTCGAATTGCTTTTTCATTCCTAGTACTTGAATTTTCATTGCGCCATTTAACCATTTGGCTTAAAGTTGAAATTGATTGTTTTTGTTGTTTGGGATTTTTGGTGAAGATTCCGAAAATTGGAACTGTTTTGAGCGTATTGGTCTAGCGAACGGATAATGTTGCTGTTCTTAGTTTGTTGAAAATCCGGTGTTGGATCACCCATTTGAATTTGAAGGCTGTTATTCCTGTTGCTCGAAGGATTTGAAGTCTTCTATCTACTTGCTGTGTAGTATTTTCGATCTTCGTTGTTTAAATCTTCACACATGTTGACAGTAGTAGCTATATGATTCCCAAATCAGAAAAGTTGGATGAATTACCAACAATAGCTTTTAGTTTCCTGGCAGTTTTTATGTGAGATCCCACATCGATTGAACGAATGCCAACGAGGACGCTAGGTCCCGAAGGGGTGGATTGTGAGATCCCACGTTGGTTGAAGGGGGGAACAAAGCA

Coding sequence (CDS)

ATGGCTCCGGCGAAGAAGGGGAAAACGAAAGCTCCGAAAGGTACTGAATCAATTGAATCGTGCCTCAAAACCAACAATTACCCTTCTTGTCTTCGCTCTGTTTCTTCTTCTTCTGTCGCCATTACCATCCACGCAAAGCCTGGCTCCAAGATCGCCTCTATCACAGACTTTGGCGATGATGCGTTGGGAGTGCAAATCGACGCACCTGCGAAAGATGGAGAAGCTAATGCTGCGCTTCTTGATTACATGAGCTCTGTGAGTTGGGCATTCTTTGCTGCTTATTATTTGATTTCGAATTGCTTTTTCATTCCTAGTACTTGA

Protein sequence

MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDDALGVQIDAPAKDGEANAALLDYMSSVSWAFFAAYYLISNCFFIPST

Homology

[Close]

BLAST of Carg24326 vs. NCBI nr
Match: KAG7011128.1 (hypothetical protein SDJN02_27926 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
           MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD
Sbjct: 1   MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60

Query: 61  ALGVQIDAPAKDGEANAALLDYMSSVSWAFFAAYYLISNCFFIPST 107
           ALGVQIDAPAKDGEANAALLDYMSSVSWAFFAAYYLISNCFFIPST
Sbjct: 61  ALGVQIDAPAKDGEANAALLDYMSSVSWAFFAAYYLISNCFFIPST 106

[Close]

BLAST of Carg24326 vs. NCBI nr
Match: KAG6571356.1 (hypothetical protein SDJN03_30271, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.0 bits (419), Expect = 1.8e-37
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD
Sbjct: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSSV 87
          ALGVQIDAPAKDGEANAALLDYMSSV
Sbjct: 61 ALGVQIDAPAKDGEANAALLDYMSSV 86

[Close]

BLAST of Carg24326 vs. NCBI nr
Match: XP_023512400.1 (UPF0235 protein C15orf40 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.0 bits (419), Expect = 1.8e-37
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD
Sbjct: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSSV 87
          ALGVQIDAPAKDGEANAALLDYMSSV
Sbjct: 61 ALGVQIDAPAKDGEANAALLDYMSSV 86

[Close]

BLAST of Carg24326 vs. NCBI nr
Match: XP_022927983.1 (uncharacterized protein LOC111434889 [Cucurbita moschata])

HSP 1 Score: 161.0 bits (406), Expect = 5.6e-36
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          MAPAKKGKTKA KGTES ESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD
Sbjct: 1  MAPAKKGKTKAQKGTESTESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSSV 87
          ALGVQIDAPAKDGEANAALLDYMSSV
Sbjct: 61 ALGVQIDAPAKDGEANAALLDYMSSV 86

[Close]

BLAST of Carg24326 vs. NCBI nr
Match: XP_022971730.1 (UPF0235 protein C15orf40 homolog [Cucurbita maxima])

HSP 1 Score: 156.0 bits (393), Expect = 1.8e-34
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          MAPAKKGKTKAPK TESI+S LK NNYPSCLRSVSSSS+AITIHAKPGSKIASITDFGDD
Sbjct: 1  MAPAKKGKTKAPKATESIQSSLKPNNYPSCLRSVSSSSIAITIHAKPGSKIASITDFGDD 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSSV 87
          ALGVQIDAPAKDGEANAALLDYMSSV
Sbjct: 61 ALGVQIDAPAKDGEANAALLDYMSSV 86

[Close]

BLAST of Carg24326 vs. ExPASy Swiss-Prot
Match: Q505I4 (UPF0235 protein C15orf40 homolog OS=Rattus norvegicus OX=10116 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.7e-07
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 35 SSSSVAITIHAKPGSKIASITDFGDDALGVQIDAPAKDGEANAALLDYMSSV 87
          S   V I IHAKPGSK  ++TD   +A+GV I AP  +GEANA L  Y+S V
Sbjct: 32 SKGFVTIAIHAKPGSKQNAVTDLNTEAVGVAIAAPPSEGEANAELCRYLSKV 83

[Close]

BLAST of Carg24326 vs. ExPASy Swiss-Prot
Match: Q9CRC3 (UPF0235 protein C15orf40 homolog OS=Mus musculus OX=10090 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 39 VAITIHAKPGSKIASITDFGDDALGVQIDAPAKDGEANAALLDYMSSV 87
          V I IHAKPGS+  ++TD   +A+GV I AP  +GEANA L  Y+S V
Sbjct: 36 VTIAIHAKPGSRQNAVTDLSTEAVGVAIAAPPSEGEANAELCRYLSKV 83

[Close]

BLAST of Carg24326 vs. ExPASy Swiss-Prot
Match: Q3ZBP8 (UPF0235 protein C15orf40 homolog OS=Bos taurus OX=9913 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.3e-06
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 39 VAITIHAKPGSKIASITDFGDDALGVQIDAPAKDGEANAALLDYMSSV 87
          V+I IHAKPGSK  ++TD   +A+ V I AP  +GEANA L  Y+S V
Sbjct: 36 VSIAIHAKPGSKQNAVTDVTTEAVSVAIAAPPTEGEANAELCRYLSKV 83

[Close]

BLAST of Carg24326 vs. ExPASy Swiss-Prot
Match: Q8WUR7 (UPF0235 protein C15orf40 OS=Homo sapiens OX=9606 GN=C15orf40 PE=1 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 8.3e-06
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 39  VAITIHAKPGSKIASITDFGDDALGVQIDAPAKDGEANAALLDYMSSV 87
           V I IHAKPGSK  ++TD   +A+ V I AP  +GEANA L  Y+S V
Sbjct: 63  VTIAIHAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELCRYLSKV 110

[Close]

BLAST of Carg24326 vs. ExPASy TrEMBL
Match: A0A6J1EMK4 (uncharacterized protein LOC111434889 OS=Cucurbita moschata OX=3662 GN=LOC111434889 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.7e-36
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          MAPAKKGKTKA KGTES ESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD
Sbjct: 1  MAPAKKGKTKAQKGTESTESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSSV 87
          ALGVQIDAPAKDGEANAALLDYMSSV
Sbjct: 61 ALGVQIDAPAKDGEANAALLDYMSSV 86

[Close]

BLAST of Carg24326 vs. ExPASy TrEMBL
Match: A0A6J1I6J5 (UPF0235 protein C15orf40 homolog OS=Cucurbita maxima OX=3661 GN=LOC111470398 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 8.8e-35
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          MAPAKKGKTKAPK TESI+S LK NNYPSCLRSVSSSS+AITIHAKPGSKIASITDFGDD
Sbjct: 1  MAPAKKGKTKAPKATESIQSSLKPNNYPSCLRSVSSSSIAITIHAKPGSKIASITDFGDD 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSSV 87
          ALGVQIDAPAKDGEANAALLDYMSSV
Sbjct: 61 ALGVQIDAPAKDGEANAALLDYMSSV 86

[Close]

BLAST of Carg24326 vs. ExPASy TrEMBL
Match: A0A0A0LMY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G301550 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.3e-33
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1   MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
           M PAKKGKTKAPK TESI+S +K+NNYPSCLRSVS SSVAITIHAKPGSKIASITDFGDD
Sbjct: 29  MPPAKKGKTKAPKATESIQSSVKSNNYPSCLRSVSPSSVAITIHAKPGSKIASITDFGDD 88

Query: 61  ALGVQIDAPAKDGEANAALLDYMSSV 87
           ALGVQIDAPAKDGEANAALLDYMSSV
Sbjct: 89  ALGVQIDAPAKDGEANAALLDYMSSV 114

[Close]

BLAST of Carg24326 vs. ExPASy TrEMBL
Match: A0A1S3CDI8 (UPF0235 protein LHK_03181 OS=Cucumis melo OX=3656 GN=LOC103499646 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.8e-33
Identity = 79/86 (91.86%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1   MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
           M PAKKGKTKAPK TESI+S +KTNNYPSCLRSVS SSVAITIHAKPGSKIASITDF DD
Sbjct: 29  MPPAKKGKTKAPKATESIQSSVKTNNYPSCLRSVSPSSVAITIHAKPGSKIASITDFDDD 88

Query: 61  ALGVQIDAPAKDGEANAALLDYMSSV 87
           ALGVQIDAPAKDGEANAALLDYMSSV
Sbjct: 89  ALGVQIDAPAKDGEANAALLDYMSSV 114

[Close]

BLAST of Carg24326 vs. ExPASy TrEMBL
Match: A0A6J1CR98 (uncharacterized protein LOC111013451 OS=Momordica charantia OX=3673 GN=LOC111013451 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.5e-29
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          M PAKKGKTKAPK TESI+S    N +PSCLRSV+ SSVAITIHAKPGSKIASITDFGDD
Sbjct: 1  MPPAKKGKTKAPKATESIQS----NKFPSCLRSVAPSSVAITIHAKPGSKIASITDFGDD 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSSV 87
          ALGVQIDAPAKDGEANAALLDY+S+V
Sbjct: 61 ALGVQIDAPAKDGEANAALLDYISTV 82

[Close]

BLAST of Carg24326 vs. TAIR 10
Match: AT1G49170.1 (Protein of unknown function (DUF167) )

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-22
Identity = 57/86 (66.28%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 1  MAPAKKGKTKAPKGTESIESCLKTNNYPSCLRSVSSSSVAITIHAKPGSKIASITDFGDD 60
          MAP KKGK K     ES  +  +++++P+CLR ++ SSVAITIHAKPGSK ASITD  D+
Sbjct: 1  MAPTKKGK-KTKSAAES-TTVTESSSFPTCLRLLTPSSVAITIHAKPGSKAASITDVSDE 60

Query: 61 ALGVQIDAPAKDGEANAALLDYMSSV 87
          A+GVQIDAPA+DGEANAALL+YMSSV
Sbjct: 61 AVGVQIDAPARDGEANAALLEYMSSV 84

The following BLAST results are available for this feature:

BLAST of Carg24326 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011128.1	1.2e-49	100.00	hypothetical protein SDJN02_27926 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6571356.1	1.8e-37	100.00	hypothetical protein SDJN03_30271, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023512400.1	1.8e-37	100.00	UPF0235 protein C15orf40 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022927983.1	5.6e-36	97.67	uncharacterized protein LOC111434889 [Cucurbita moschata]	[more]
XP_022971730.1	1.8e-34	94.19	UPF0235 protein C15orf40 homolog [Cucurbita maxima]	[more]

BLAST of Carg24326 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q505I4	9.7e-07	53.85	UPF0235 protein C15orf40 homolog OS=Rattus norvegicus OX=10116 PE=2 SV=1	[more]
Q9CRC3	1.7e-06	54.17	UPF0235 protein C15orf40 homolog OS=Mus musculus OX=10090 PE=1 SV=1	[more]
Q3ZBP8	8.3e-06	54.17	UPF0235 protein C15orf40 homolog OS=Bos taurus OX=9913 PE=2 SV=1	[more]
Q8WUR7	8.3e-06	54.17	UPF0235 protein C15orf40 OS=Homo sapiens OX=9606 GN=C15orf40 PE=1 SV=2	[more]

BLAST of Carg24326 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EMK4	2.7e-36	97.67	uncharacterized protein LOC111434889 OS=Cucurbita moschata OX=3662 GN=LOC1114348...	[more]
A0A6J1I6J5	8.8e-35	94.19	UPF0235 protein C15orf40 homolog OS=Cucurbita maxima OX=3661 GN=LOC111470398 PE=...	[more]
A0A0A0LMY2	1.3e-33	91.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G301550 PE=3 SV=1	[more]
A0A1S3CDI8	2.8e-33	91.86	UPF0235 protein LHK_03181 OS=Cucumis melo OX=3656 GN=LOC103499646 PE=3 SV=1	[more]
A0A6J1CR98	5.5e-29	84.88	uncharacterized protein LOC111013451 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Carg24326 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49170.1	1.3e-22	66.28	Protein of unknown function (DUF167)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003746	Protein of unknown function DUF167	SMART	SM01152	DUF167_2	coord: 35..88 e-value: 6.7E-7 score: 38.9
IPR003746	Protein of unknown function DUF167	PFAM	PF02594	DUF167	coord: 39..86 e-value: 4.2E-12 score: 46.0
IPR036591	YggU-like superfamily	GENE3D	3.30.1200.10		coord: 29..88 e-value: 2.2E-13 score: 51.7
IPR036591	YggU-like superfamily	SUPERFAMILY	69786	YggU-like	coord: 29..86
None	No IPR available	PANTHER	PTHR47817	OS04G0686300 PROTEIN	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24326-RA	Carg24326-RA	mRNA