Carg24319 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24319
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Glyco_hydro_18 domain-containing protein
Location	Carg_Chr20: 10028210 .. 10028902 (-)
RNA-Seq Expression	Carg24319
Synteny	Carg24319

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTACATCGGAGCAACAGGCATTCCAATCACCTTCGATAGCGTCCCGATCTTCGATGATATCGATTTCCATTTCATCCTCAGCTTCGCCATCGACGCAGATCCCTCCGGCAATCCTCAAAATGGGAAATTCTCCAACTATTGGGAGCCCTCACTAACCCCAGGATCAGTTGCAGCCATTAAAGCCGAACACCCGAACGTCAAAGCCCTAGCGAGCCTCTCGGGTTGGAGCCTCGGCGACACCGTCCTCCGATGGCAAAACCCTCGAAACCCTAATCTCTGGATCACCAATGCCTTCTCCACTCTCAAAGCTCTTATCATAAAATACCACCTCGACGGCATCGACATCGACTATGAGAACTTCCCAAAACACGGCTCAAACTTCGCCTTCTGCATCGGCGAGCTCATAACCCTACTTAAGAACCAAAGCGTCATCTCCGTAGCCACAATTGCGCCGTATTACTCGACGGTTACACCTTACTTGGAGCTCTTCCATGGCTATGGGGAGGTGATTGATTATGTCAACTACCAATTTTATACCGACAAAGTGAGAACGGCTAAGGCTTACTTGAAGAGATTTGAGGTTAGAGCTAAGGAGTTTGGAGAAGGGAAGTTGCTACCAAGCTATGAGGTGAATGGGAGAGGGATTCAAGGGGATGCCTTTTTTGAAGCTTTGAATTTGTTGGAATGA

mRNA sequence

ATGGAGTACATCGGAGCAACAGGCATTCCAATCACCTTCGATAGCGTCCCGATCTTCGATGATATCGATTTCCATTTCATCCTCAGCTTCGCCATCGACGCAGATCCCTCCGGCAATCCTCAAAATGGGAAATTCTCCAACTATTGGGAGCCCTCACTAACCCCAGGATCAGTTGCAGCCATTAAAGCCGAACACCCGAACGTCAAAGCCCTAGCGAGCCTCTCGGGTTGGAGCCTCGGCGACACCGTCCTCCGATGGCAAAACCCTCGAAACCCTAATCTCTGGATCACCAATGCCTTCTCCACTCTCAAAGCTCTTATCATAAAATACCACCTCGACGGCATCGACATCGACTATGAGAACTTCCCAAAACACGGCTCAAACTTCGCCTTCTGCATCGGCGAGCTCATAACCCTACTTAAGAACCAAAGCGTCATCTCCGTAGCCACAATTGCGCCGTATTACTCGACGGTTACACCTTACTTGGAGCTCTTCCATGGCTATGGGGAGGTGATTGATTATGTCAACTACCAATTTTATACCGACAAAGTGAGAACGGCTAAGGCTTACTTGAAGAGATTTGAGGTTAGAGCTAAGGAGTTTGGAGAAGGGAAGTTGCTACCAAGCTATGAGGTGAATGGGAGAGGGATTCAAGGGGATGCCTTTTTTGAAGCTTTGAATTTGTTGGAATGA

Coding sequence (CDS)

ATGGAGTACATCGGAGCAACAGGCATTCCAATCACCTTCGATAGCGTCCCGATCTTCGATGATATCGATTTCCATTTCATCCTCAGCTTCGCCATCGACGCAGATCCCTCCGGCAATCCTCAAAATGGGAAATTCTCCAACTATTGGGAGCCCTCACTAACCCCAGGATCAGTTGCAGCCATTAAAGCCGAACACCCGAACGTCAAAGCCCTAGCGAGCCTCTCGGGTTGGAGCCTCGGCGACACCGTCCTCCGATGGCAAAACCCTCGAAACCCTAATCTCTGGATCACCAATGCCTTCTCCACTCTCAAAGCTCTTATCATAAAATACCACCTCGACGGCATCGACATCGACTATGAGAACTTCCCAAAACACGGCTCAAACTTCGCCTTCTGCATCGGCGAGCTCATAACCCTACTTAAGAACCAAAGCGTCATCTCCGTAGCCACAATTGCGCCGTATTACTCGACGGTTACACCTTACTTGGAGCTCTTCCATGGCTATGGGGAGGTGATTGATTATGTCAACTACCAATTTTATACCGACAAAGTGAGAACGGCTAAGGCTTACTTGAAGAGATTTGAGGTTAGAGCTAAGGAGTTTGGAGAAGGGAAGTTGCTACCAAGCTATGAGGTGAATGGGAGAGGGATTCAAGGGGATGCCTTTTTTGAAGCTTTGAATTTGTTGGAATGA

Protein sequence

MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAAIKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYENFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFYTDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLLE

Homology

[Close]

BLAST of Carg24319 vs. NCBI nr
Match: KAG7011121.1 (hypothetical protein SDJN02_27919, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 478.0 bits (1229), Expect = 4.5e-131
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA 60
           MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA
Sbjct: 1   MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA 60

Query: 61  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE 120
           IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE
Sbjct: 61  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE 120

Query: 121 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY 180
           NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY
Sbjct: 121 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY 180

Query: 181 TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLLE 231
           TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLLE
Sbjct: 181 TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLLE 230

[Close]

BLAST of Carg24319 vs. NCBI nr
Match: XP_022932031.1 (chitinase 1-like [Cucurbita moschata])

HSP 1 Score: 476.9 bits (1226), Expect = 1.0e-130
Identity = 229/230 (99.57%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA 60
           MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA
Sbjct: 2   MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA 61

Query: 61  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE 120
           IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE
Sbjct: 62  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE 121

Query: 121 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY 180
           NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY
Sbjct: 122 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY 181

Query: 181 TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLLE 231
           TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLL+
Sbjct: 182 TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLLD 231

[Close]

BLAST of Carg24319 vs. NCBI nr
Match: XP_022971630.1 (chitinase 1-like [Cucurbita maxima])

HSP 1 Score: 471.1 bits (1211), Expect = 5.5e-129
Identity = 227/230 (98.70%), Postives = 228/230 (99.13%), Query Frame = 0


Query: 1   MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA 60
           MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTP SVAA
Sbjct: 2   MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPESVAA 61

Query: 61  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE 120
           IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE
Sbjct: 62  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE 121

Query: 121 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY 180
           NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY
Sbjct: 122 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY 181

Query: 181 TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLLE 231
           TDKVRTAKAYLKRFEVRAKEFG GKLLPSYEVNGRGIQGDAFFEALNLL+
Sbjct: 182 TDKVRTAKAYLKRFEVRAKEFGGGKLLPSYEVNGRGIQGDAFFEALNLLD 231

[Close]

BLAST of Carg24319 vs. NCBI nr
Match: XP_023512403.1 (chitinase 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 469.5 bits (1207), Expect = 1.6e-128
Identity = 224/229 (97.82%), Postives = 228/229 (99.56%), Query Frame = 0


Query: 1   MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA 60
           MEYIGATGIP+TFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTP SVAA
Sbjct: 2   MEYIGATGIPVTFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPESVAA 61

Query: 61  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE 120
           IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKAL+IKYHLDGIDIDYE
Sbjct: 62  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALVIKYHLDGIDIDYE 121

Query: 121 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY 180
           NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTV+PYLEL+HGYGEVIDYVNYQFY
Sbjct: 122 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVSPYLELYHGYGEVIDYVNYQFY 181

Query: 181 TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLL 230
           TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLL
Sbjct: 182 TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLL 230

[Close]

BLAST of Carg24319 vs. NCBI nr
Match: KAG6571350.1 (hypothetical protein SDJN03_30265, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 462.6 bits (1189), Expect = 2.0e-126
Identity = 223/229 (97.38%), Postives = 224/229 (97.82%), Query Frame = 0


Query: 1   MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA 60
           MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTP SVAA
Sbjct: 29  MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPESVAA 88

Query: 61  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE 120
           IKAE PNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKAL+IKYHLDGIDIDYE
Sbjct: 89  IKAERPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALVIKYHLDGIDIDYE 148

Query: 121 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY 180
           NFPKH SNFAFCIGELITLLKNQSVISVATIAPYYSTV PYLELFHGYGEVIDYVNYQFY
Sbjct: 149 NFPKHDSNFAFCIGELITLLKNQSVISVATIAPYYSTVAPYLELFHGYGEVIDYVNYQFY 208

Query: 181 TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLL 230
           TDKVRTAKAYLKRFEVRAKEFGEG LLPSYEVNGRGIQGDAFFEALNLL
Sbjct: 209 TDKVRTAKAYLKRFEVRAKEFGEGTLLPSYEVNGRGIQGDAFFEALNLL 257

[Close]

BLAST of Carg24319 vs. ExPASy Swiss-Prot
Match: Q9SLP4 (Chitinase 1 OS=Tulipa saxatilis subsp. bakeri OX=110455 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-43
Identity = 100/237 (42.19%), Postives = 143/237 (60.34%), Query Frame = 0


Query: 2   EYIGATGIPITFDSVPIFDDIDFHFILSFAID--ADPSGNPQNGKFSNYWEP-SLTPGSV 61
           EYIG+    + F  VPI  D+DFHFIL+FAID  +  S  P NG F  +W+  +L+P  V
Sbjct: 31  EYIGSQFNDVKFSDVPINPDVDFHFILAFAIDYTSGSSPTPTNGNFKPFWDTNNLSPSQV 90

Query: 62  AAIKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDID 121
           AA+K  H NVK   SL G S+G   + + +P + + W+ NA S+L  +I +YHLDGIDID
Sbjct: 91  AAVKRTHSNVKVSLSLGGDSVGGKNV-FFSPSSVSSWVENAVSSLTRIIKQYHLDGIDID 150

Query: 122 YENFPKHGSNFAFCIGELITLLKNQSVISVATIAPY--YSTVTPYLELFHGYGEVIDYVN 181
           YE+F    + FA CIG+L+T LK   V+S  +IAP+      + Y  L+  YG  IDYVN
Sbjct: 151 YEHFKGDPNTFAECIGQLVTRLKKNEVVSFVSIAPFDDAQVQSHYQALWEKYGHQIDYVN 210

Query: 182 YQFYTDKVRTA-KAYLKRFEVRAKEFGEGKLLPSYEVNGRG--IQGDAFFEALNLLE 231
           +QFY    RT+ + +LK FE ++  +  GK+L S+  +  G     + FF A ++L+
Sbjct: 211 FQFYAYSARTSVEQFLKYFEEQSSNYHGGKVLVSFSTDSSGGLKPDNGFFRACSILK 266

[Close]

BLAST of Carg24319 vs. ExPASy Swiss-Prot
Match: Q7M443 (Chitinase 2 OS=Tulipa saxatilis subsp. bakeri OX=110455 PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.2e-43
Identity = 100/237 (42.19%), Postives = 144/237 (60.76%), Query Frame = 0


Query: 2   EYIGATGIPITFDSVPIFDDIDFHFILSFAID--ADPSGNPQNGKFSNYWEP-SLTPGSV 61
           EYIGA    + F  VPI  ++DFHFIL+FAID  +  S  P NG F+ +W+  +L+P  V
Sbjct: 5   EYIGAQFNDVKFSDVPINPNVDFHFILAFAIDYTSGSSPTPTNGNFNPFWDTNNLSPSQV 64

Query: 62  AAIKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDID 121
           AAIK  + NVK   SL G S+G   + + NP + + W+ NA S+L  +I +YHLDGIDID
Sbjct: 65  AAIKRTYNNVKVSVSLGGNSVGGERV-FFNPSSVSSWVDNAVSSLTKIIKQYHLDGIDID 124

Query: 122 YENFPKHGSNFAFCIGELITLLKNQSVISVATIAPY--YSTVTPYLELFHGYGEVIDYVN 181
           YE+F    + FA CIG+L+T LK   V+S  +IAP+      + Y  L+  YG  IDYVN
Sbjct: 125 YEHFKGDPNTFAECIGQLVTRLKKNGVVSFVSIAPFDDAQVQSHYQALWEKYGHQIDYVN 184

Query: 182 YQFYTDKVR-TAKAYLKRFEVRAKEFGEGKLLPSYEVNGRG--IQGDAFFEALNLLE 231
           +QFY    R + + +LK FE++   +  GK+L S+  +  G     + FF+A ++L+
Sbjct: 185 FQFYVYSSRMSVEQFLKYFEMQRSNYPGGKVLVSFSTDNSGGLKPRNGFFDACSILK 240

[Close]

BLAST of Carg24319 vs. ExPASy Swiss-Prot
Match: P39657 (RuBisCO-associated protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-11
Identity = 44/135 (32.59%), Postives = 69/135 (51.11%), Query Frame = 0


Query: 23  DFHFILSFAIDADPSGNPQNGKFSNYWE-PSLTPGSVAAIKAEHP----NVKALASLSGW 82
           +F   LS A D D   N  NGKF  YW+   +TP  +   K ++      VK L S+ G 
Sbjct: 28  EFQVTLSLARDYD-GNNSTNGKFIPYWDTEKVTPEVIKKFKKKYEPTALRVKVLVSI-GN 87

Query: 83  SLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYENFPKHGSNFAFCIGELI 142
                     +  N   W++ A ++LK++I  Y+LDGID+ YE+   + ++F   +G L+
Sbjct: 88  KNKQFPFTIGSDSNSEAWVSEATASLKSIIKTYNLDGIDVSYEDIAANEADFVNSVGGLV 147

Query: 143 TLLKNQSVISVATIA 153
             LK   +I+VA+ A
Sbjct: 148 RNLKQNKLITVASFA 160

[Close]

BLAST of Carg24319 vs. ExPASy TrEMBL
Match: A0A6J1EV84 (chitinase 1-like OS=Cucurbita moschata OX=3662 GN=LOC111438357 PE=3 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 4.9e-131
Identity = 229/230 (99.57%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA 60
           MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA
Sbjct: 2   MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA 61

Query: 61  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE 120
           IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE
Sbjct: 62  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE 121

Query: 121 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY 180
           NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY
Sbjct: 122 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY 181

Query: 181 TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLLE 231
           TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLL+
Sbjct: 182 TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLLD 231

[Close]

BLAST of Carg24319 vs. ExPASy TrEMBL
Match: A0A6J1I699 (chitinase 1-like OS=Cucurbita maxima OX=3661 GN=LOC111470313 PE=3 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 2.7e-129
Identity = 227/230 (98.70%), Postives = 228/230 (99.13%), Query Frame = 0


Query: 1   MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA 60
           MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTP SVAA
Sbjct: 2   MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPESVAA 61

Query: 61  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE 120
           IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE
Sbjct: 62  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE 121

Query: 121 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY 180
           NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY
Sbjct: 122 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY 181

Query: 181 TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLLE 231
           TDKVRTAKAYLKRFEVRAKEFG GKLLPSYEVNGRGIQGDAFFEALNLL+
Sbjct: 182 TDKVRTAKAYLKRFEVRAKEFGGGKLLPSYEVNGRGIQGDAFFEALNLLD 231

[Close]

BLAST of Carg24319 vs. ExPASy TrEMBL
Match: A0A142BTQ6 (Chitinase 1 OS=Cucumis melo OX=3656 GN=cht1 PE=2 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.2e-115
Identity = 200/230 (86.96%), Postives = 217/230 (94.35%), Query Frame = 0


Query: 1   MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA 60
           MEYIGATGIP+TFD+VPIFDDIDFHFILSFAIDADPS NPQNGKFS YWEPSLTP SVAA
Sbjct: 1   MEYIGATGIPVTFDNVPIFDDIDFHFILSFAIDADPSANPQNGKFSPYWEPSLTPESVAA 60

Query: 61  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE 120
           IKA+HPNVKALASLSGWSL + VLRW+NP +PNLWI+NAFSTL+ L+ KYHLDGID+DYE
Sbjct: 61  IKAQHPNVKALASLSGWSLDNIVLRWRNPPDPNLWISNAFSTLQDLVNKYHLDGIDVDYE 120

Query: 121 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY 180
           NFP+HGSNFAFCIGELITLLKNQSVISVATIAPYYSTV PYLELFHGYG+VID+VNYQFY
Sbjct: 121 NFPRHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVLPYLELFHGYGKVIDFVNYQFY 180

Query: 181 TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLLE 231
           TDKV T +AYLKRFE+RAKEFG  KLLPSYEVNGRGIQGDAFFEAL+LL+
Sbjct: 181 TDKVTTPEAYLKRFEIRAKEFGSAKLLPSYEVNGRGIQGDAFFEALSLLD 230

[Close]

BLAST of Carg24319 vs. ExPASy TrEMBL
Match: A0A5D3BSJ5 (Chitinase 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00670 PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.2e-115
Identity = 200/230 (86.96%), Postives = 217/230 (94.35%), Query Frame = 0


Query: 1   MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA 60
           MEYIGATGIP+TFD+VPIFDDIDFHFILSFAIDADPS NPQNGKFS YWEPSLTP SVAA
Sbjct: 1   MEYIGATGIPVTFDNVPIFDDIDFHFILSFAIDADPSANPQNGKFSPYWEPSLTPESVAA 60

Query: 61  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE 120
           IKA+HPNVKALASLSGWSL + VLRW+NP +PNLWI+NAFSTL+ L+ KYHLDGID+DYE
Sbjct: 61  IKAQHPNVKALASLSGWSLDNIVLRWRNPPDPNLWISNAFSTLQDLVNKYHLDGIDVDYE 120

Query: 121 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY 180
           NFP+HGSNFAFCIGELITLLKNQSVISVATIAPYYSTV PYLELFHGYG+VID+VNYQFY
Sbjct: 121 NFPRHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVLPYLELFHGYGKVIDFVNYQFY 180

Query: 181 TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLLE 231
           TDKV T +AYLKRFE+RAKEFG  KLLPSYEVNGRGIQGDAFFEAL+LL+
Sbjct: 181 TDKVTTPEAYLKRFEIRAKEFGSAKLLPSYEVNGRGIQGDAFFEALSLLD 230

[Close]

BLAST of Carg24319 vs. ExPASy TrEMBL
Match: A0A1S3CD03 (chitinase 2-like OS=Cucumis melo OX=3656 GN=LOC103499637 PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.2e-115
Identity = 200/230 (86.96%), Postives = 217/230 (94.35%), Query Frame = 0


Query: 1   MEYIGATGIPITFDSVPIFDDIDFHFILSFAIDADPSGNPQNGKFSNYWEPSLTPGSVAA 60
           MEYIGATGIP+TFD+VPIFDDIDFHFILSFAIDADPS NPQNGKFS YWEPSLTP SVAA
Sbjct: 36  MEYIGATGIPVTFDNVPIFDDIDFHFILSFAIDADPSANPQNGKFSPYWEPSLTPESVAA 95

Query: 61  IKAEHPNVKALASLSGWSLGDTVLRWQNPRNPNLWITNAFSTLKALIIKYHLDGIDIDYE 120
           IKA+HPNVKALASLSGWSL + VLRW+NP +PNLWI+NAFSTL+ L+ KYHLDGID+DYE
Sbjct: 96  IKAQHPNVKALASLSGWSLDNIVLRWRNPPDPNLWISNAFSTLQDLVNKYHLDGIDVDYE 155

Query: 121 NFPKHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVTPYLELFHGYGEVIDYVNYQFY 180
           NFP+HGSNFAFCIGELITLLKNQSVISVATIAPYYSTV PYLELFHGYG+VID+VNYQFY
Sbjct: 156 NFPRHGSNFAFCIGELITLLKNQSVISVATIAPYYSTVLPYLELFHGYGKVIDFVNYQFY 215

Query: 181 TDKVRTAKAYLKRFEVRAKEFGEGKLLPSYEVNGRGIQGDAFFEALNLLE 231
           TDKV T +AYLKRFE+RAKEFG  KLLPSYEVNGRGIQGDAFFEAL+LL+
Sbjct: 216 TDKVTTPEAYLKRFEIRAKEFGSAKLLPSYEVNGRGIQGDAFFEALSLLD 265

The following BLAST results are available for this feature:

BLAST of Carg24319 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011121.1	4.5e-131	100.00	hypothetical protein SDJN02_27919, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022932031.1	1.0e-130	99.57	chitinase 1-like [Cucurbita moschata]	[more]
XP_022971630.1	5.5e-129	98.70	chitinase 1-like [Cucurbita maxima]	[more]
XP_023512403.1	1.6e-128	97.82	chitinase 1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6571350.1	2.0e-126	97.38	hypothetical protein SDJN03_30265, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg24319 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SLP4	1.7e-43	42.19	Chitinase 1 OS=Tulipa saxatilis subsp. bakeri OX=110455 PE=1 SV=1	[more]
Q7M443	8.2e-43	42.19	Chitinase 2 OS=Tulipa saxatilis subsp. bakeri OX=110455 PE=1 SV=1	[more]
P39657	2.9e-11	32.59	RuBisCO-associated protein OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of Carg24319 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EV84	4.9e-131	99.57	chitinase 1-like OS=Cucurbita moschata OX=3662 GN=LOC111438357 PE=3 SV=1	[more]
A0A6J1I699	2.7e-129	98.70	chitinase 1-like OS=Cucurbita maxima OX=3661 GN=LOC111470313 PE=3 SV=1	[more]
A0A142BTQ6	2.2e-115	86.96	Chitinase 1 OS=Cucumis melo OX=3656 GN=cht1 PE=2 SV=1	[more]
A0A5D3BSJ5	2.2e-115	86.96	Chitinase 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G006...	[more]
A0A1S3CD03	2.2e-115	86.96	chitinase 2-like OS=Cucumis melo OX=3656 GN=LOC103499637 PE=3 SV=1	[more]

BLAST of Carg24319 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000677	Chitinase-like	PRINTS	PR00551	2SGLOBULIN	coord: 58..76 score: 40.79 coord: 16..35 score: 37.5
None	No IPR available	GENE3D	3.20.20.80	Glycosidases	coord: 1..230 e-value: 2.4E-53 score: 183.4
None	No IPR available	PANTHER	PTHR46476	CHITINASE 2-LIKE	coord: 1..230
None	No IPR available	PANTHER	PTHR46476:SF9	CHITINASE 2-LIKE	coord: 1..230
IPR001223	Glycoside hydrolase family 18, catalytic domain	PFAM	PF00704	Glyco_hydro_18	coord: 26..180 e-value: 1.2E-13 score: 51.5
IPR001223	Glycoside hydrolase family 18, catalytic domain	PROSITE	PS51910	GH18_2	coord: 1..230 score: 18.217346
IPR001579	Glycosyl hydrolases family 18 (GH18) active site	PROSITE	PS01095	GH18_1	coord: 112..120
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 16..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24319-RA	Carg24319-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004568	chitinase activity
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds