Carg24315 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24315
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ras-related protein RABC1-like
Location	Carg_Chr20: 9982660 .. 9987863 (-)
RNA-Seq Expression	Carg24315
Synteny	Carg24315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACTCACGCAACCTTGCCATTTTTATTTCGTGGTTGCTTTGCTTCCGCTACCAATCGATCGATCACCTGAGTTGACTCAAGGGCGGGATCCATAAAGGATTCGCCATTTTCATTTGCCGTTCCTTTTTCTAATTCTATAGCCTAACCAAGATCACGGAGTTCTTCAATTTCTTTGTTTCGTTTCCCCTTTTCATTGGACGCGCCATCGATTTTACATTGGATTGGAGTATTTGGGTATTGTGTCTGATCTGTTCTTACGGGATGATATCTTCAATTTCATTTATGTTTTTTTTTTCCTAATCTCCCTTGGTAATGCCACATGCTGTTTTGCGTTCTGTGAATCCGCTGAGATTTGGTTTTTCTTTTCTTTGATTAGGTACGTAACCGGGAGGATTCTTATTTTTTAAAATTGTTGATTGATGGATTCGACGTCCGAGTTTGATTACTTGTTCAAATTATTGTTGATTGGGGACTCGGGGGTTGGAAAAAGTAGTCTGCTCTTAAGTTTTACTTCCGACAGCTTCGAGGATCTCTCTCCAACAATCGGTTAGTTCTGTCATACAGATCTATATATATACATATGAGCATAGGAAAATCGTTTGTATTGTTTGCTGCTGTACATTGGTTTATCATTTTAAAGAAAATTGATGTTAGATAATGAAATGCTAGTGCTGAATTTTCACTTTCATTTGCTGCATGGGATTGAGATGAGATAGAGGGCAAAAGATGAAATGAAAGGGAAAATTGAGAGGACCATTGTTGAGAAAATGAGGAATAAGATTATGAGATTCCATTAATCTTTCAACAATATTTCATCAAGAAAAGAAAGAGGCTCTTAGACAATCAGGTCAAGTTTCATTTTAGGACAGTTAAAGGAACTTAGCTACATACATTCATTTCTGAAAAGCTAAAATGAGAAGAATTTCTAATGGAAAATAATATTTCCAAGTAATGTATGGTTCATTTTTATTGCTTTGTACTGTTGTTATTTGCAGGAATTGCATTATAGCATTATGAAAGGCCTTTTTTACTTGCGTTTCTTACTGTGGGAGTTGTTAGTTGAAAAGATTTTCCTTTTACCTTTGTAAACTTGGTTGAATTTTAAAATGCACTACTGAAATTATGTTTTCTATCTCATTCTTAATTGAATTAGCATTAACAAAATTGAGAATTTGAAATGATATTTTGATTATAAATCCTACATTTGCTTGTTTCATTGTGTTGGATTGCTTGATTGAAGTGCAAAACGCTACAAACCTTGCTAACTTCTACTTATTTGGCTTGTGATGGCAGGTAAGCATCAGAGAACTAGAAATCTATTCTAATTGCTTGTCATTTTCATGCGCAGGTGTGGATTTTAAGGTAAAATATGTTACTGCTGGGGGTAAAAGGCTGAAGCTTGCAATTTGGGATACAGGTAATTAAACTTCTCCACATACATGATTTTTGTAGCATTCTTCCATTCTTGCTTCTTCCTCCATTTTACTTTATGAGAGGGCGTCTGTTCTCTTTTTCACACAAGCAAGATACACGTTCTTGCAGAGAAGCACGGTACAGATCAGTAATATGATTACTTTACCTGAAGATATTGCATAGTTAATTGTCAATTGTTTAACTATAACCGTGAAGAATAGGCTGCTGGACAATATACTAAATTATGTTTTGATTAAATCTGAATCTTAACTTAACAGACTAAGGAATCTCAAAGTATCAGTTCTAATTCTCAATTGTTATTTGATGGTTCTAGTGCTGTCAATTATAAAGATGATATGGCTGTCCTTGTTGATTTTCCATGACTTATTTGTTGGTCCTAGGGCATTACTTCTATATTGTAATAGCCTAAGCCCACCGCTAGCAGATATTGTCCTCTTTAAATTTTCCCTTTCGAGCTTTCCCTCAAGGTTTTAAAAACGTGTCTAATAAGGAGAGGTCTCCACAGCCTTATAAACAATGCTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACATATATATTTCTTGTACTGAACCTGCATGAAAGAAATCTGGTTTACTAGATCTCCAAGCAAGGCATTCTATAGAATCTAATCCAATCTTAAATCATACAGCTGGGCAGGAGAGATTCAGAACATTGACTAGTTCATACTACAGAGGCGCTCAAGGGATCATCATGGGTGTGTTCTATCCCCTTTTTATGTGATTGTTTCAAGGAAATAAAAATTCTTGGCTAAGTATAAGTACTAAATATCCTAGATGTGTTTAGTTTAAAAGGTGTTCATTATGTTTCCAAATTCGAAGTTGTTCATTTGTTTGGCTGTCCAATATTATTCTACTGCCTTCTGTGTTGTTGTCTTGATTATGACATCAAAGGTTAACTGTGTCAGTTTATGATGTGACGCGGAGGGAGACCTTTACAAACCTCTCTGAGGTATGGGCGAAGGAAATAGACCTATATTCAACAAATCAAGATTGCATCAAGATGCTTGTGGGGAACAAAGTCGATAAGGTATGCATCTTCAACTTTCATTTGAAATTTTCTATAAGCCTGAAGCTGGTTCCTGTAACATTTGTATAGATGCTGGTTAATTGATCGTGTTCGGTGAACTGAAATTAGTGTTCCGAAGAACTTTCAGGTTAATTACTGATAACCATTTGATAATTTAAGAGCCGATTACGTGAGTTATGAATAGCCATGCTTTTTCCATAAGGGTGTGCTAGGTATCCAAGCGGTTATATACTATTATGAAAAAACTTTGAAGAGTGTCAAGACACCTTAATAATGAAATCTAGACACTAGGCTGACTCATCTCCAAGCACAAAGGCCAAAGCCTTTCCTAAATTACATGTATGTTCTCAAACTCACGTCCCTCCTACAAACTATACCAAACTCGTACTCTTAACTAATTGTCATAAGAGATACATTCTTTGTAACAACTCAAGCTCACTGCTAGCAGATATTGTCTTCTTTGGGCTTTCTCTTTCGGGCTTTCCCTCAAGGTTTTTAAAATGCTTCTACTAGGGAGAGGTTTCCACACCTTATAAGGAATATTTCGTTCTCCTAGGGAGAAGTTTCCACACCTTATAAGGAATATTTCGTTCTCCTCCCCAACCAATGTGGGATCTCACATTCTCCTTGTCCATTTTGCTCTTCCTAGTATAGACATATATTATTGGAGGCCTAACAAAGTTTTTTGGAATGTATGAACTCGAGATTGGAAATTCAATCCCAAGTGAATTCCAAGGTTTGGAACAAAAAATTATATTTCATTGCAAGATTTAGGAAGCCATTCGATATTTCATCTTAGTTTCTTTATATCTTATTGAAAAAAAAAAAAAAAAAAAATCAATTGGTAAAACAGAGACCATGATCCTTCTGATTTCAAATCCAAATCCATTAATAGTATCATTAATTACAAACGTAGTTATAGGTTATTTGTTTTCTTAAATGTCTTTCTAATGAAGTGAGGTTCAGGTATAAATCCAAAATAGTTTATTAAGTGCAATATTGAACATTCTTAATTAATTTTGTTTAAGTTTCTGATGGTGGAGTTCAGTTGATTTTTTAATTACTAAGGAGAAAACAATTCTACGGCTTAACATGTTTAGAGACTCAGTTTGGTGTTTATGTCTTGAAATGAATGGCTTAACCTTCTTTTGTTAGTCTTTCTTGGTATAAAGTTTATGCTCCCTTCAGACCATAGAGTTTATCTTTGTAACTTTGGGTTCTTGGATTTCATCCACTCTTTTTTGTAATTTCATTCCACGATTGAAGTTATTTTTTCTCGTAAAAAGCAAAAAAGAAATCATGGATTCTTATACAATATGAAGTCCTTGTGTTGAAGGTTTCGTTCAAACCATTGTTATGGCTTTAGAAATCAGCTCAATTAAAGCCTAGGGAATGAATTCGCTTGAATCTTTTTTTACTCAAATTAGTTCCAAACCCAGCCTTCATGTTGACTATCCATTCATTTCAATGACTAATTAGGTCATACCCTTTCGACGGAATTATTTTCCCATTTCCCTGTAAGGAAGATTTAGATGAACATTTCAAATTAATACTTCTAAATGTTTTAATTGGCTCATATATATTTTTTTTAACAAGAAACCGAATGTTCGTTGGGAAGAACCTAAGAACAAAATGGCATGTCCAACATACCCTAAATGTGAAGTGAGGTTTAGTGAAATTCTTTTGATCTCTATTCTCTTATGATATTGTTCTTCATATCTGTATCCAGCTTAGTTTTTATCTGTATTTTCTTCTTCAGGAAAGCTTTAGATCTGTATTTTCTTCTTCAGGAAAGCTTTAGGACAGTAACAAAGAAAGAGGGAATTGACATGGCTAGGGAATGTGGTTGTCTTTTTACAGAATGCAGTGCCAAAACTCGAGTTAATGTACAACAGTGCTTTGAAGAACTTGTTTTAAAGGTAATAGTATTAGTTCAGTACTTCTAGTTTATTTTTTGGTCAAAAGATCCATATTGATTGGCGACTGTCAGGAACGAGGTGTTTCCCCTGTTGTAACAACCACATCTTTGATAGTTCTCGAACGAAAATTGCTGTCACGTTCCTGGTAGATTCATAAATAGGTTGAGACATCTATGAGAGTTGCTAGGCAGTGGAAGAATTTTGAAACCTCTCGAAAAGTCGCGTTTTAGCAATGATTATTCCTCTTCTTTATCCTACGAACTTACTGAATGTTGCATGGACGAAAAAACGTGATAATAATGATTCTTATGTGCAGATTCTTGAGACGCCCAGCCTTTTATCTGAAGGCTCTAAAGGAGTGAGAAAGAACATCTTCAAGGAAAAGCCTCCACAGCCTGATTCAGCCGCGAGCAGTTGTTGCTGAAATCGGTTCATTGTCTCTAACTACATTTGCTGATTTTTTTCTAAATTATTGTAAAATTATAGTAGAAAGGTATGGTGTTACAGCTTTTATTGTATCTCACAAATTACGGTACAAATTAAATCTGTTCTTGTCTTCTGGGCTGGCTTTCTTGTACAGGGAAAAATTGGAAATGGAAACATAACATGACATGATATTGGGTTAAGAGCCTGCTTGTTTATAGCTTATTCAATTGTTGTTTATATATATATATTATATAGTAGATAGTTATATATAGTAAACTGAATCAAATATATACCTTGTAGAGAGTGGTGTGAAAATGTACTTTATGCGTTATTCAATGCAGATCTTTAGCCAATATTCCTCTTTACATTTTC

mRNA sequence

AAACTCACGCAACCTTGCCATTTTTATTTCGTGGTTGCTTTGCTTCCGCTACCAATCGATCGATCACCTGAGTTGACTCAAGGGCGGGATCCATAAAGGATTCGCCATTTTCATTTGCCGTTCCTTTTTCTAATTCTATAGCCTAACCAAGATCACGGAGTTCTTCAATTTCTTTGTTTCGTTTCCCCTTTTCATTGGACGCGCCATCGATTTTACATTGGATTGGAGTATTTGGGTACGTAACCGGGAGGATTCTTATTTTTTAAAATTGTTGATTGATGGATTCGACGTCCGAGTTTGATTACTTGTTCAAATTATTGTTGATTGGGGACTCGGGGGTTGGAAAAAGTAGTCTGCTCTTAAGTTTTACTTCCGACAGCTTCGAGGATCTCTCTCCAACAATCGGTGTGGATTTTAAGGTAAAATATGTTACTGCTGGGGGTAAAAGGCTGAAGCTTGCAATTTGGGATACAGCTGGGCAGGAGAGATTCAGAACATTGACTAGTTCATACTACAGAGGCGCTCAAGGGATCATCATGGTTTATGATGTGACGCGGAGGGAGACCTTTACAAACCTCTCTGAGGTATGGGCGAAGGAAATAGACCTATATTCAACAAATCAAGATTGCATCAAGATGCTTGTGGGGAACAAAGTCGATAAGGAAAGCTTTAGGACAGTAACAAAGAAAGAGGGAATTGACATGGCTAGGGAATGTGGTTGTCTTTTTACAGAATGCAGTGCCAAAACTCGAGTTAATGTACAACAGTGCTTTGAAGAACTTGTTTTAAAGATTCTTGAGACGCCCAGCCTTTTATCTGAAGGCTCTAAAGGAGTGAGAAAGAACATCTTCAAGGAAAAGCCTCCACAGCCTGATTCAGCCGCGAGCAGTTGTTGCTGAAATCGGTTCATTGTCTCTAACTACATTTGCTGATTTTTTTCTAAATTATTGTAAAATTATAGTAGAAAGGTATGGTGTTACAGCTTTTATTGTATCTCACAAATTACGGTACAAATTAAATCTGTTCTTGTCTTCTGGGCTGGCTTTCTTGTACAGGGAAAAATTGGAAATGGAAACATAACATGACATGATATTGGGTTAAGAGCCTGCTTGTTTATAGCTTATTCAATTGTTGTTTATATATATATATTATATAGTAGATAGTTATATATAGTAAACTGAATCAAATATATACCTTGTAGAGAGTGGTGTGAAAATGTACTTTATGCGTTATTCAATGCAGATCTTTAGCCAATATTCCTCTTTACATTTTC

Coding sequence (CDS)

ATGGATTCGACGTCCGAGTTTGATTACTTGTTCAAATTATTGTTGATTGGGGACTCGGGGGTTGGAAAAAGTAGTCTGCTCTTAAGTTTTACTTCCGACAGCTTCGAGGATCTCTCTCCAACAATCGGTGTGGATTTTAAGGTAAAATATGTTACTGCTGGGGGTAAAAGGCTGAAGCTTGCAATTTGGGATACAGCTGGGCAGGAGAGATTCAGAACATTGACTAGTTCATACTACAGAGGCGCTCAAGGGATCATCATGGTTTATGATGTGACGCGGAGGGAGACCTTTACAAACCTCTCTGAGGTATGGGCGAAGGAAATAGACCTATATTCAACAAATCAAGATTGCATCAAGATGCTTGTGGGGAACAAAGTCGATAAGGAAAGCTTTAGGACAGTAACAAAGAAAGAGGGAATTGACATGGCTAGGGAATGTGGTTGTCTTTTTACAGAATGCAGTGCCAAAACTCGAGTTAATGTACAACAGTGCTTTGAAGAACTTGTTTTAAAGATTCTTGAGACGCCCAGCCTTTTATCTGAAGGCTCTAAAGGAGTGAGAAAGAACATCTTCAAGGAAAAGCCTCCACAGCCTGATTCAGCCGCGAGCAGTTGTTGCTGA

Protein sequence

MDSTSEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKMLVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLSEGSKGVRKNIFKEKPPQPDSAASSCC

Homology

[Close]

BLAST of Carg24315 vs. NCBI nr
Match: XP_022932011.1 (ras-related protein RABC1-like [Cucurbita moschata] >KAG7011117.1 Ras-related protein RABC1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 414.1 bits (1063), Expect = 7.2e-112
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MDSTSEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKL 60
           MDSTSEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKL
Sbjct: 1   MDSTSEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKL 60

Query: 61  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKM 120
           AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKM
Sbjct: 61  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKM 120

Query: 121 LVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLS 180
           LVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLS
Sbjct: 121 LVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLS 180

Query: 181 EGSKGVRKNIFKEKPPQPDSAASSCC 207
           EGSKGVRKNIFKEKPPQPDSAASSCC
Sbjct: 181 EGSKGVRKNIFKEKPPQPDSAASSCC 206

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BLAST of Carg24315 vs. NCBI nr
Match: XP_023512396.1 (ras-related protein RABC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 410.2 bits (1053), Expect = 1.0e-110
Identity = 203/206 (98.54%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MDSTSEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKL 60
           MDSTSEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVT GGKRLKL
Sbjct: 1   MDSTSEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTVGGKRLKL 60

Query: 61  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKM 120
           AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKM
Sbjct: 61  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKM 120

Query: 121 LVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLS 180
           LVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLS
Sbjct: 121 LVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLS 180

Query: 181 EGSKGVRKNIFKEKPPQPDSAASSCC 207
           EGSKGVRKNIFKEKPPQPD++ASSCC
Sbjct: 181 EGSKGVRKNIFKEKPPQPDASASSCC 206

[Close]

BLAST of Carg24315 vs. NCBI nr
Match: XP_022971628.1 (ras-related protein RABC1-like [Cucurbita maxima])

HSP 1 Score: 405.6 bits (1041), Expect = 2.6e-109
Identity = 203/209 (97.13%), Postives = 206/209 (98.56%), Query Frame = 0


Query: 1   MDSTS---EFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKR 60
           MDSTS   EFDYLFKLL+IGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKR
Sbjct: 1   MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKR 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPS 180
           IKMLVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPS
Sbjct: 121 IKMLVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPDSAASSCC 207
           LLSEGSKGVRKNIFKEKPPQPD++ASSCC
Sbjct: 181 LLSEGSKGVRKNIFKEKPPQPDASASSCC 209

[Close]

BLAST of Carg24315 vs. NCBI nr
Match: XP_038901438.1 (ras-related protein RABC1-like [Benincasa hispida])

HSP 1 Score: 391.7 bits (1005), Expect = 3.8e-105
Identity = 195/209 (93.30%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MDSTS---EFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKR 60
           MDSTS   EFDYLFKLL+IGDSGVGKSSLLLSFT+DSFEDLSPTIGVDFKVKYVTAGGK+
Sbjct: 1   MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTTDSFEDLSPTIGVDFKVKYVTAGGKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWA+EIDLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPS 180
           IKMLVGNKVDKESFRTVTKKEGIDMARE GCLF ECSAKTRVNVQQCFEELVLKIL+TPS
Sbjct: 121 IKMLVGNKVDKESFRTVTKKEGIDMAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPDSAASSCC 207
           LLSEGSKGVR+NIFKEKPPQPD++ SSCC
Sbjct: 181 LLSEGSKGVRRNIFKEKPPQPDASTSSCC 209

[Close]

BLAST of Carg24315 vs. NCBI nr
Match: XP_022156664.1 (ras-related protein RABC1-like [Momordica charantia])

HSP 1 Score: 391.3 bits (1004), Expect = 5.0e-105
Identity = 195/209 (93.30%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MDST---SEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKR 60
           MDS+   SEFDYLFKLL+IGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGK+
Sbjct: 1   MDSSSNQSEFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPS 180
           IKMLVGNKVDKES+RTVTKKEGIDMARE GCLF ECSAKTRVNVQQCFEELVLKIL+TPS
Sbjct: 121 IKMLVGNKVDKESYRTVTKKEGIDMAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPDSAASSCC 207
           LLSEGSKGVR+NIFKEKPPQPD++ SSCC
Sbjct: 181 LLSEGSKGVRRNIFKEKPPQPDASTSSCC 209

[Close]

BLAST of Carg24315 vs. ExPASy Swiss-Prot
Match: O23657 (Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 7.0e-94
Identity = 170/201 (84.58%), Postives = 185/201 (92.04%), Query Frame = 0


Query: 6   EFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKLAIWDT 65
           EFDYLFK+LLIGDSGVGKSSLLLSFTS++F+DLSPTIGVDFKVKY+T G K+LKLAIWDT
Sbjct: 9   EFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKKLKLAIWDT 68

Query: 66  AGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKMLVGNK 125
           AGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLS++WAKEIDLYSTNQDCIKMLVGNK
Sbjct: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNK 128

Query: 126 VDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLSEGSKG 185
           VDKES R V+KKEGID ARE GCLF ECSAKTRVNV+QCFEELVLKILETPSL +EGS G
Sbjct: 129 VDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLTAEGSSG 188

Query: 186 VRKNIFKEKPPQPDSAASSCC 207
            +KNIFK+ P Q  S +SS C
Sbjct: 189 GKKNIFKQNPAQTTSTSSSYC 209

[Close]

BLAST of Carg24315 vs. ExPASy Swiss-Prot
Match: O49841 (Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.1e-81
Identity = 145/202 (71.78%), Postives = 171/202 (84.65%), Query Frame = 0


Query: 5   SEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKLAIWD 64
           S +D  FK+LLIGDSGVGKSSLL+SF S S EDL+PTIGVDFK+K +T GGKRLKL IWD
Sbjct: 8   SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWD 67

Query: 65  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKMLVGN 124
           TAGQERFRTLTSSYYRGAQGII+VYDVTRRETFTNL +VW KEI+LYSTNQ+C++MLVGN
Sbjct: 68  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQECVRMLVGN 127

Query: 125 KVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLSEGSK 184
           KVD+ES R V+++EGI +A+E  C+F ECSA+TR NV+QCFEEL LKI+E PSLL EGS 
Sbjct: 128 KVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPSLLEEGSS 187

Query: 185 GVRKNIFKEKPPQPDSAASSCC 207
            V++NI K+KP    +  S CC
Sbjct: 188 AVKRNILKQKPEHQTNTQSGCC 209

[Close]

BLAST of Carg24315 vs. ExPASy Swiss-Prot
Match: Q9SF92 (Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.5e-72
Identity = 131/184 (71.20%), Postives = 157/184 (85.33%), Query Frame = 0


Query: 5   SEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKLAIWD 64
           S +D  FK+LLIGDSGVGKSSLLLSF S S EDL+PTIGVDFK+K +   GKRLKL IWD
Sbjct: 8   SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGKRLKLTIWD 67

Query: 65  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKMLVGN 124
           TAGQE+FRTLTSSY+RG+QGII+VYDVT+RETF NL+++WAKEI+LYSTN DCIKMLVGN
Sbjct: 68  TAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDCIKMLVGN 127

Query: 125 KVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLSEGSK 184
           KVD+ES R V+++EG+ +A++  CLF ECSA+TR NV  CFEEL LKI+E PSLL EGS 
Sbjct: 128 KVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPSLLEEGSS 187

Query: 185 GVRK 189
            V++
Sbjct: 188 SVKR 191

[Close]

BLAST of Carg24315 vs. ExPASy Swiss-Prot
Match: P36862 (GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 8.1e-58
Identity = 115/179 (64.25%), Postives = 135/179 (75.42%), Query Frame = 0


Query: 8   DYLFKLLLIGDSGVGKSSLLLSFTSDSFED-LSPTIGVDFKVKYVTAGGKRLKLAIWDTA 67
           DY FK+LL+GDSGVGKS +L  FTS  FE+  + TIGVDFKVKY+TA GKR KL IWDTA
Sbjct: 7   DYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWDTA 66

Query: 68  GQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKMLVGNKV 127
           GQERFRTLTSSYYRGAQGII VYDVTRR+TF +L   W +E D+YST +  IKM+V NKV
Sbjct: 67  GQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKV 126

Query: 128 DKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLSEGSKG 186
           D  + R V+ +EG D AR  GCLF E SA+  + V Q FEEL+LKIL+TP LL   + G
Sbjct: 127 DLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLLETTAVG 185

[Close]

BLAST of Carg24315 vs. ExPASy Swiss-Prot
Match: Q6DHC1 (Ras-related protein Rab-18-B OS=Danio rerio OX=7955 GN=rab18b PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.0e-53
Identity = 114/198 (57.58%), Postives = 139/198 (70.20%), Query Frame = 0


Query: 12  KLLLIGDSGVGKSSLLLSFTSDSFE-DLSPTIGVDFKVKYVTAGGKRLKLAIWDTAGQER 71
           K+L+IG+SGVGKSSLLL FT D+F+ +L+ TIGVDFKVK +   G R KLAIWDTAGQER
Sbjct: 10  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQER 69

Query: 72  FRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKMLVGNKVDKES 131
           FRTLT SYYRGAQG+I+VYDVT+R+TFT L E W  E++ Y T  D +KMLVGNK+DK++
Sbjct: 70  FRTLTPSYYRGAQGVILVYDVTKRDTFTKL-ENWLNELETYCTRNDLVKMLVGNKIDKDN 129

Query: 132 FRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLSEG--SKGVRK 191
            R V + EG+  AR+   LF E SAKTR  VQ  FEELV KIL+TP L      + GV+ 
Sbjct: 130 -REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWESSIQNHGVQ- 189

Query: 192 NIFKEKPPQPDSAASSCC 207
               +  PQ   A    C
Sbjct: 190 --LSDNEPQRQGACGGYC 202

[Close]

BLAST of Carg24315 vs. ExPASy TrEMBL
Match: A0A6J1EV62 (ras-related protein RABC1-like OS=Cucurbita moschata OX=3662 GN=LOC111438341 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 3.5e-112
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MDSTSEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKL 60
           MDSTSEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKL
Sbjct: 1   MDSTSEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKL 60

Query: 61  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKM 120
           AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKM
Sbjct: 61  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKM 120

Query: 121 LVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLS 180
           LVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLS
Sbjct: 121 LVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLS 180

Query: 181 EGSKGVRKNIFKEKPPQPDSAASSCC 207
           EGSKGVRKNIFKEKPPQPDSAASSCC
Sbjct: 181 EGSKGVRKNIFKEKPPQPDSAASSCC 206

[Close]

BLAST of Carg24315 vs. ExPASy TrEMBL
Match: A0A6J1I7F2 (ras-related protein RABC1-like OS=Cucurbita maxima OX=3661 GN=LOC111470311 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.2e-109
Identity = 203/209 (97.13%), Postives = 206/209 (98.56%), Query Frame = 0


Query: 1   MDSTS---EFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKR 60
           MDSTS   EFDYLFKLL+IGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKR
Sbjct: 1   MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKR 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPS 180
           IKMLVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPS
Sbjct: 121 IKMLVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPDSAASSCC 207
           LLSEGSKGVRKNIFKEKPPQPD++ASSCC
Sbjct: 181 LLSEGSKGVRKNIFKEKPPQPDASASSCC 209

[Close]

BLAST of Carg24315 vs. ExPASy TrEMBL
Match: A0A6J1DU73 (ras-related protein RABC1-like OS=Momordica charantia OX=3673 GN=LOC111023514 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.4e-105
Identity = 195/209 (93.30%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MDST---SEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKR 60
           MDS+   SEFDYLFKLL+IGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGK+
Sbjct: 1   MDSSSNQSEFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPS 180
           IKMLVGNKVDKES+RTVTKKEGIDMARE GCLF ECSAKTRVNVQQCFEELVLKIL+TPS
Sbjct: 121 IKMLVGNKVDKESYRTVTKKEGIDMAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPDSAASSCC 207
           LLSEGSKGVR+NIFKEKPPQPD++ SSCC
Sbjct: 181 LLSEGSKGVRRNIFKEKPPQPDASTSSCC 209

[Close]

BLAST of Carg24315 vs. ExPASy TrEMBL
Match: A0A0A0LQC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G334520 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 7.0e-105
Identity = 194/209 (92.82%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MDSTS---EFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKR 60
           MDSTS   EFDYLFKLL+IGDSGVGKSSLLLSFTSD+FEDLSPTIGVDFKVKYVTAGGK+
Sbjct: 1   MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEDLSPTIGVDFKVKYVTAGGKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLSEVWAKEIDLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEVWAKEIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPS 180
           IKMLVGNKVDKES+RTVTKKEGIDMARE GCLFTECSAKTRVNVQQCFEELVLKIL+TPS
Sbjct: 121 IKMLVGNKVDKESYRTVTKKEGIDMAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPDSAASSCC 207
           LLSEGSKGVR+NIFKEKPPQ D++ SSCC
Sbjct: 181 LLSEGSKGVRRNIFKEKPPQSDASTSSCC 209

[Close]

BLAST of Carg24315 vs. ExPASy TrEMBL
Match: A0A5D3BQN6 (Ras-related protein RABC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00560 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 5.9e-104
Identity = 193/209 (92.34%), Postives = 202/209 (96.65%), Query Frame = 0


Query: 1   MDSTS---EFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKR 60
           MDSTS   EFDYLFKLL+IGDSGVGKSSLLLSFTSD+FEDLSPTIGVDFKVKYVTAGGK+
Sbjct: 1   MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEDLSPTIGVDFKVKYVTAGGKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLSEVWAKEIDLYSTN DC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEVWAKEIDLYSTNPDC 120

Query: 121 IKMLVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPS 180
           IKMLVGNKVDKES+RTVTKKEGIDMARE GCLF ECSAKTRVNVQQCFEELVLKIL+TPS
Sbjct: 121 IKMLVGNKVDKESYRTVTKKEGIDMAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPDSAASSCC 207
           LLSEGSKGVR+NIFKEKPPQ D++ASSCC
Sbjct: 181 LLSEGSKGVRRNIFKEKPPQSDASASSCC 209

[Close]

BLAST of Carg24315 vs. TAIR 10
Match: AT1G43890.1 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 344.7 bits (883), Expect = 5.0e-95
Identity = 170/201 (84.58%), Postives = 185/201 (92.04%), Query Frame = 0


Query: 6   EFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKLAIWDT 65
           EFDYLFK+LLIGDSGVGKSSLLLSFTS++F+DLSPTIGVDFKVKY+T G K+LKLAIWDT
Sbjct: 9   EFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKKLKLAIWDT 68

Query: 66  AGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKMLVGNK 125
           AGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLS++WAKEIDLYSTNQDCIKMLVGNK
Sbjct: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNK 128

Query: 126 VDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLSEGSKG 185
           VDKES R V+KKEGID ARE GCLF ECSAKTRVNV+QCFEELVLKILETPSL +EGS G
Sbjct: 129 VDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLTAEGSSG 188

Query: 186 VRKNIFKEKPPQPDSAASSCC 207
            +KNIFK+ P Q  S +SS C
Sbjct: 189 GKKNIFKQNPAQTTSTSSSYC 209

[Close]

BLAST of Carg24315 vs. TAIR 10
Match: AT1G43890.2 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 344.7 bits (883), Expect = 5.0e-95
Identity = 170/201 (84.58%), Postives = 185/201 (92.04%), Query Frame = 0


Query: 6   EFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKLAIWDT 65
           EFDYLFK+LLIGDSGVGKSSLLLSFTS++F+DLSPTIGVDFKVKY+T G K+LKLAIWDT
Sbjct: 9   EFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKKLKLAIWDT 68

Query: 66  AGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKMLVGNK 125
           AGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLS++WAKEIDLYSTNQDCIKMLVGNK
Sbjct: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNK 128

Query: 126 VDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLSEGSKG 185
           VDKES R V+KKEGID ARE GCLF ECSAKTRVNV+QCFEELVLKILETPSL +EGS G
Sbjct: 129 VDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLTAEGSSG 188

Query: 186 VRKNIFKEKPPQPDSAASSCC 207
            +KNIFK+ P Q  S +SS C
Sbjct: 189 GKKNIFKQNPAQTTSTSSSYC 209

[Close]

BLAST of Carg24315 vs. TAIR 10
Match: AT1G43890.3 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 344.7 bits (883), Expect = 5.0e-95
Identity = 170/201 (84.58%), Postives = 185/201 (92.04%), Query Frame = 0


Query: 6   EFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKLAIWDT 65
           EFDYLFK+LLIGDSGVGKSSLLLSFTS++F+DLSPTIGVDFKVKY+T G K+LKLAIWDT
Sbjct: 9   EFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKKLKLAIWDT 68

Query: 66  AGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKMLVGNK 125
           AGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLS++WAKEIDLYSTNQDCIKMLVGNK
Sbjct: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNK 128

Query: 126 VDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLSEGSKG 185
           VDKES R V+KKEGID ARE GCLF ECSAKTRVNV+QCFEELVLKILETPSL +EGS G
Sbjct: 129 VDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLTAEGSSG 188

Query: 186 VRKNIFKEKPPQPDSAASSCC 207
            +KNIFK+ P Q  S +SS C
Sbjct: 189 GKKNIFKQNPAQTTSTSSSYC 209

[Close]

BLAST of Carg24315 vs. TAIR 10
Match: AT5G03530.1 (RAB GTPase homolog C2A )

HSP 1 Score: 304.3 bits (778), Expect = 7.5e-83
Identity = 145/202 (71.78%), Postives = 171/202 (84.65%), Query Frame = 0


Query: 5   SEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKLAIWD 64
           S +D  FK+LLIGDSGVGKSSLL+SF S S EDL+PTIGVDFK+K +T GGKRLKL IWD
Sbjct: 8   SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWD 67

Query: 65  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKMLVGN 124
           TAGQERFRTLTSSYYRGAQGII+VYDVTRRETFTNL +VW KEI+LYSTNQ+C++MLVGN
Sbjct: 68  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQECVRMLVGN 127

Query: 125 KVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLSEGSK 184
           KVD+ES R V+++EGI +A+E  C+F ECSA+TR NV+QCFEEL LKI+E PSLL EGS 
Sbjct: 128 KVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPSLLEEGSS 187

Query: 185 GVRKNIFKEKPPQPDSAASSCC 207
            V++NI K+KP    +  S CC
Sbjct: 188 AVKRNILKQKPEHQTNTQSGCC 209

[Close]

BLAST of Carg24315 vs. TAIR 10
Match: AT3G09910.1 (RAB GTPase homolog C2B )

HSP 1 Score: 273.9 bits (699), Expect = 1.1e-73
Identity = 131/184 (71.20%), Postives = 157/184 (85.33%), Query Frame = 0


Query: 5   SEFDYLFKLLLIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKRLKLAIWD 64
           S +D  FK+LLIGDSGVGKSSLLLSF S S EDL+PTIGVDFK+K +   GKRLKL IWD
Sbjct: 8   SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGKRLKLTIWD 67

Query: 65  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDCIKMLVGN 124
           TAGQE+FRTLTSSY+RG+QGII+VYDVT+RETF NL+++WAKEI+LYSTN DCIKMLVGN
Sbjct: 68  TAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDCIKMLVGN 127

Query: 125 KVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPSLLSEGSK 184
           KVD+ES R V+++EG+ +A++  CLF ECSA+TR NV  CFEEL LKI+E PSLL EGS 
Sbjct: 128 KVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPSLLEEGSS 187

Query: 185 GVRK 189
            V++
Sbjct: 188 SVKR 191

The following BLAST results are available for this feature:

BLAST of Carg24315 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932011.1	7.2e-112	100.00	ras-related protein RABC1-like [Cucurbita moschata] >KAG7011117.1 Ras-related pr...	[more]
XP_023512396.1	1.0e-110	98.54	ras-related protein RABC1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022971628.1	2.6e-109	97.13	ras-related protein RABC1-like [Cucurbita maxima]	[more]
XP_038901438.1	3.8e-105	93.30	ras-related protein RABC1-like [Benincasa hispida]	[more]
XP_022156664.1	5.0e-105	93.30	ras-related protein RABC1-like [Momordica charantia]	[more]

BLAST of Carg24315 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23657	7.0e-94	84.58	Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1	[more]
O49841	1.1e-81	71.78	Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1	[more]
Q9SF92	1.5e-72	71.20	Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1	[more]
P36862	8.1e-58	64.25	GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1	[more]
Q6DHC1	6.0e-53	57.58	Ras-related protein Rab-18-B OS=Danio rerio OX=7955 GN=rab18b PE=2 SV=1	[more]

BLAST of Carg24315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EV62	3.5e-112	100.00	ras-related protein RABC1-like OS=Cucurbita moschata OX=3662 GN=LOC111438341 PE=...	[more]
A0A6J1I7F2	1.2e-109	97.13	ras-related protein RABC1-like OS=Cucurbita maxima OX=3661 GN=LOC111470311 PE=4 ...	[more]
A0A6J1DU73	2.4e-105	93.30	ras-related protein RABC1-like OS=Momordica charantia OX=3673 GN=LOC111023514 PE...	[more]
A0A0A0LQC6	7.0e-105	92.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G334520 PE=4 SV=1	[more]
A0A5D3BQN6	5.9e-104	92.34	Ras-related protein RABC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Carg24315 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43890.1	5.0e-95	84.58	RAB GTPASE HOMOLOG B18	[more]
AT1G43890.2	5.0e-95	84.58	RAB GTPASE HOMOLOG B18	[more]
AT1G43890.3	5.0e-95	84.58	RAB GTPASE HOMOLOG B18	[more]
AT5G03530.1	7.5e-83	71.78	RAB GTPase homolog C2A	[more]
AT3G09910.1	1.1e-73	71.20	RAB GTPase homolog C2B	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 150..172 score: 40.38 coord: 11..32 score: 54.27 coord: 51..73 score: 51.22 coord: 33..49 score: 29.28 coord: 115..128 score: 42.87
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 16..202 e-value: 1.1E-4 score: 17.7
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 8..175 e-value: 3.2E-28 score: 109.7
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..176 e-value: 0.0052 score: -0.8
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 11..175 e-value: 2.9E-96 score: 335.8
None	No IPR available	PANTHER	PTHR47977	LD21953P-RELATED	coord: 3..206
None	No IPR available	PANTHER	PTHR47977:SF46	BNAA05G18680D PROTEIN	coord: 3..206
None	No IPR available	PROSITE	PS51419	RAB	coord: 6..206 score: 32.106613
None	No IPR available	PROSITE	PS51420	RHO	coord: 4..173 score: 10.057789
None	No IPR available	CDD	cd01863	Rab18	coord: 11..172 e-value: 1.1194E-103 score: 293.833
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 13..175 e-value: 2.0E-18 score: 77.2
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 12..173 e-value: 6.7E-55 score: 185.1
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 3..206 score: 17.169867
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 4..206 e-value: 4.4E-63 score: 214.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 7..192
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 9..167 e-value: 8.3E-29 score: 98.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24315-RA	Carg24315-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0005794	Golgi apparatus
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding