Carg24300 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24300
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr20: 9829384 .. 9830110 (+)
RNA-Seq Expression	Carg24300
Synteny	Carg24300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCCTCCCTCCCTCCCATTACCAGTCGCTGCACCCCCACCCCCACCCCGGACGCCGTCTCAGCGGCCGCCGCCGCACGCTGCAATCCCTCTCCCATTCTCTGGCCTCTCCCAGCAATCGGAGTTACTTATCTCTGTTTTATTTTCTCAGAAACACGGTGGTTCAGCCCCTAATCCGCGCCATTCGTAGGATCCTACCGCTGCCGCTCATTTTCGGATCCCCTAGGTCTTATTTTTTATTTGTTTTGTTCGTTTGTTATGTTGGTTTATTCTCTTTCACCCATGGAGAAGAACTTCAAGAGTATGCTATTTTTCCTGTTGAGTTCTTCAAGAATTGTTCAACTTATGTAAATGAAAACATAAAACTAGAAATGTATCCATCTCTTGTTAGAAAAATGAAGAACAGATTGAGTCGATAAATAAGAACAAAAAATGTATCATTCTTATCGGAATCCAATAAATAAAGAAGAAATAATTGTTTTAAAAGATGAACAGAGGTTGTAGGCTGGCAATGAACAACTTGTTGGCCTTGTTATCGATCTTTTCTTAAAAAAGAACAGCATAATTAATTGGCATACAAAGAATACAAGATTTCGAACTGCAAACTGATTCGTAATTTCTTGTTTTTCTTTTCTCATAAAAAATTCAGGGAGGCACATATAACTTTCTTTTACTCTGCAGGGGTTGCAAGGGATTTTGAATTTATCGTCGAGGAAGGTAGTTGTTAA

mRNA sequence

AGCCCTCCCTCCCTCCCATTACCAGTCGCTGCACCCCCACCCCCACCCCGGACGCCGTCTCAGCGGCCGCCGCCGCACGCTGCAATCCCTCTCCCATTCTCTGGCCTCTCCCAGCAATCGGAGTTACTTATCTCTGTTTTATTTTCTCAGAAACACGGTGGTTCAGCCCCTAATCCGCGCCATTCGGAGGCACATATAACTTTCTTTTACTCTGCAGGGGTTGCAAGGGATTTTGAATTTATCGTCGAGGAAGGTAGTTGTTAA

Coding sequence (CDS)

AGCCCTCCCTCCCTCCCATTACCAGTCGCTGCACCCCCACCCCCACCCCGGACGCCGTCTCAGCGGCCGCCGCCGCACGCTGCAATCCCTCTCCCATTCTCTGGCCTCTCCCAGCAATCGGAGTTACTTATCTCTGTTTTATTTTCTCAGAAACACGGTGGTTCAGCCCCTAATCCGCGCCATTCGGAGGCACATATAACTTTCTTTTACTCTGCAGGGGTTGCAAGGGATTTTGAATTTATCGTCGAGGAAGGTAGTTGTTAA

Protein sequence

SPPSLPLPVAAPPPPPRTPSQRPPPHAAIPLPFSGLSQQSELLISVLFSQKHGGSAPNPRHSEAHITFFYSAGVARDFEFIVEEGSC

Homology

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BLAST of Carg24300 vs. NCBI nr
Match: KAG7011103.1 (hypothetical protein SDJN02_27901, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 1.7e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  SPPSLPLPVAAPPPPPRTPSQRPPPHAAIPLPFSGLSQQSELLISVLFSQKHGGSAPNPR 60
          SPPSLPLPVAAPPPPPRTPSQRPPPHAAIPLPFSGLSQQSELLISVLFSQKHGGSAPNPR
Sbjct: 1  SPPSLPLPVAAPPPPPRTPSQRPPPHAAIPLPFSGLSQQSELLISVLFSQKHGGSAPNPR 60

Query: 61 HSEAHITFFYSAGVARDFEFIVEEGSC 88
          HSEAHITFFYSAGVARDFEFIVEEGSC
Sbjct: 61 HSEAHITFFYSAGVARDFEFIVEEGSC 87

The following BLAST results are available for this feature:

BLAST of Carg24300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011103.1	1.7e-38	100.00	hypothetical protein SDJN02_27901, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg24300 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24300 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24300 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24300-RA	Carg24300-RA	mRNA