Carg24293 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24293
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr15: 433923 .. 435082 (+)
RNA-Seq ExpressionCarg24293
SyntenyCarg24293
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTTGTAGCATGGAAGTCAAGCGCTCTCTTGGTAACCTTCTTATATCATGCAAACTTTCCAATCCCTATCATTCCTTATAAGGTGGCTATCAATGTGCAGTCATTGACTCAACTCAGGAGGAGATCTGCTCAGTATCAGGATGAGCTCCATTGTGATTGCACAGATGGTTTCTAGAACTCTGCACTGTGTCAGATTCCCATCGTGTGATCGCTCCTCAATGTGTGGGTAGTGTGCCTTCCTCTGGCTACAGTAAGAAATATATCACAAATCTTAGCTCTGTGTCGCCCCTGTTCGCTTACTCATCCTGGTTTAGCACTCATTTCTTCTTTTCTCACTTTAAGCATTCACTGACAAAGCAAGACTGCAAAATGGATATGTTTCATTGCCTATCACACGCAGGAGAGCTTCCAAGCCGTGCTTTCAGCTTTAATAGCAATGGGCCTGGGTAAACTTTTCATACCTCCTACTATTAGTATGTTCCATTCAAAACAATTATAAAAAATCTGAGCTCTTTCATCTTTCCGATATGGGGGTCTTCAATCAATCCCGTCATCATCATTGATCGGATAGGAATTTAAAGGAGCATGCGTAATCTTACAAATTAAACAATTGCACTGTAAGTGCGTTGACAAGAATTCAAGCCTTACGTGAACATGATCTATTCTATAAGTTGTTGTGAGATCCACATCGGTTGGGGGAGAACGAAACATTCTTTAAAGGGTGTGAAACCCTCCCTAAACAGATGCGTCCTAAAACCTTTTAAGGGGAAAGCCTGAAAGGAAAAAGCCCCAGAGGACAATATTTGCTATCAGTGAGCTTGGCTATTACAGTTTTACAACTGTGTCCTTGATTATAAGCTCCGACAATCTTTTCCAATCTTAGGATTTACATGAACGCAGTACGTCCAATGAATGATGGAGATTGATCTAGGCAAACGGAACGAAACTTCTCTCTCGGTGACCTCTTGAATACCAGCTTTGAAGAGCAATAGCTGTAAGACCCACATGGACATATATAGAATGTCCAGGCTAATAACCTTAGCATGTTCAACATCACACATGGTGGTTGATGTGGTTATCCAGAGAATCAGGTCAGCAAGAGAATCCCTGAGCGGCCACAATATAATTGATGATGTTCAGACAAGAAAGAAATAG

mRNA sequence

ATGGGGCTTGTAGCATGGAAGTCAAGCGCTCTCTTGGTAACCTTCTTATATCATGCAAACTTTCCAATCCCTATCATTCCTTATAAGGTGGCTATCAATGTGCAGTCATTGACTCAACTCAGGAGGAGATCTGCTCAGTATCAGGATGAGCTCCATTGTGATTGCACAGATGCTTTGAAGAGCAATAGCTGTAAGACCCACATGGACATATATAGAATGTCCAGGCTAATAACCTTAGCATGTTCAACATCACACATGGTGGTTGATGTGGTTATCCAGAGAATCAGGTCAGCAAGAGAATCCCTGAGCGGCCACAATATAATTGATGATGTTCAGACAAGAAAGAAATAG

Coding sequence (CDS)

ATGGGGCTTGTAGCATGGAAGTCAAGCGCTCTCTTGGTAACCTTCTTATATCATGCAAACTTTCCAATCCCTATCATTCCTTATAAGGTGGCTATCAATGTGCAGTCATTGACTCAACTCAGGAGGAGATCTGCTCAGTATCAGGATGAGCTCCATTGTGATTGCACAGATGCTTTGAAGAGCAATAGCTGTAAGACCCACATGGACATATATAGAATGTCCAGGCTAATAACCTTAGCATGTTCAACATCACACATGGTGGTTGATGTGGTTATCCAGAGAATCAGGTCAGCAAGAGAATCCCTGAGCGGCCACAATATAATTGATGATGTTCAGACAAGAAAGAAATAG

Protein sequence

MGLVAWKSSALLVTFLYHANFPIPIIPYKVAINVQSLTQLRRRSAQYQDELHCDCTDALKSNSCKTHMDIYRMSRLITLACSTSHMVVDVVIQRIRSARESLSGHNIIDDVQTRKK
Homology
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BLAST of Carg24293 vs. NCBI nr
Match: KAG7015937.1 (hypothetical protein SDJN02_21041, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 230.7 bits (587), Expect = 6.3e-57
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MGLVAWKSSALLVTFLYHANFPIPIIPYKVAINVQSLTQLRRRSAQYQDELHCDCTDALK 60
           MGLVAWKSSALLVTFLYHANFPIPIIPYKVAINVQSLTQLRRRSAQYQDELHCDCTDALK
Sbjct: 1   MGLVAWKSSALLVTFLYHANFPIPIIPYKVAINVQSLTQLRRRSAQYQDELHCDCTDALK 60

Query: 61  SNSCKTHMDIYRMSRLITLACSTSHMVVDVVIQRIRSARESLSGHNIIDDVQTRKK 117
           SNSCKTHMDIYRMSRLITLACSTSHMVVDVVIQRIRSARESLSGHNIIDDVQTRKK
Sbjct: 61  SNSCKTHMDIYRMSRLITLACSTSHMVVDVVIQRIRSARESLSGHNIIDDVQTRKK 116

The following BLAST results are available for this feature:
BLAST of Carg24293 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015937.16.3e-57100.00hypothetical protein SDJN02_21041, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg24293 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24293 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24293 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24293-RACarg24293-RAmRNA