Carg24282 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24282
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein of unknown function (DUF 3339)
Location	Carg_Chr15: 476448 .. 479638 (-)
RNA-Seq Expression	Carg24282
Synteny	Carg24282

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATTGGGGTCCGGTCTTTGTGGCGGTGGTGCTCTTCGTTCTCCTAACCCCCGGATTGCTCGTTCAGATGCCTGGGAAGAATCGCTTCATCGAGTTTGGGAACTTCCAGACCAGCGGAGTCTCCATTCTGGTTCATTCCGCTCTCTATTTTGCCTTGATCTGCATCTTCTTGCTGGCTGTTGGTGTTCATGTTTATATGGGCTCCTAATTCTAATTCTGCACCTTTTGTGTAATCCTTTTTCTTTATTTCTTCCTAACTCTGTCATCTGCTTCCATCTATACATCATTTTTTTTTAATCTCTCTGTTTATAATCATCCTCTCAACTTTGTCCTCTGTTCTTGGGGAATTTGATTCCTCAACTCGATGATTCGAGATTCGAGAAAGGGGATCGGATTTACCATAAAACTTTATTCTACGAATAAGTGACTTGCCTCAACTACGTGCATACCTAACTAAACTTTATTTTACTTTATATTCAAAACTAAGAACGTAGCAAAAATATTTTTAGGCGTGGTAATAAACTAGTCCCCCAAAAAGCACATATCGAATCAGTATGAATTTTAGACCTCCAGTTTTGATCAGTAATCAAAATCTGAACACCTAATTTTAAAAAAAAATGGAATTAATTAGAGATCTATCAGATGTTCAAAATAAACTAAATTCTGCTATGACTCAAACAAACAAAAAAAGTAATTAGAGTCTGTGTCTGAGTATAGTACAAGATCATTCAAAAGTTGAGAGAGTGCATCAACAAAATTTCAGGCGAGGAAAGCGAAATGAAAACTGAACTAAAAATCAAAGCATGAAGAAGAGATCTGAACTTGAAATTAAGCGGATGAGAGAACTTTTCATTCGATGAAGAGTAAGCAACATGAAAGTTCTTCAACTACAGATCACGAATCAACGAGAGAAATTAAAAAAAAAATTACATGGATGAAGCAGCAGCGTGATGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGAGGTCTAAATGTAAATATGGAGGTTGAGCATAACAAGTAGCAAAATAAGGAGCAGAAGAAAGACAACGGCATGAACAAAGATGGAAGCAAAACTGGTCTTCAAATTCATGAACTCGAGGGGGCGTTCCGATCCCGGCATCTGAATGATCATCCCTGGCGACAGAAACGCAAACAGAACCGAAGCGATCAATGGAGCTGCCAAATCATTCATTCTTGTGTTGTTCTTGTAAAAATGGGGGACGCACAGAATGCCTGAGTTTTAATGGTTAGAGAGGAATAAGAACTTTTGTAAAAGGTTTTACGGAGCTTCTCCACCATCCCCTTTTTATTCCATTTTCCTTGTAACTAACCCCACCCCATCACACATGGCGGGTGCATTCATAATTATGTCCTCCACTCCAATTTCATTCCCAACCATAGTCCCCGTGTGACTATCTATGACTATAGATTTATAGATTTATAACTAAGAAATACATCTTCGTTGGTATGAAATCTTTTGAAAAAATCAAAAGCAAAACCATGAGTGTCTATGTTTAAAGTGGATAATATCGTACCATTATAAATGTTTATGATTTATAACATGGTATCATGGCCATAGTTTTAACTTAGTCATGTCAATAAAACCCTCAAATGTCAAACAATGAAGTTGGGAGTCTGGAAAGTGTAGTCAAAAGGTTGTATTTTGTTCGATGGCTCCTTATGCCTCAAGGGAGGCTCTATAATGTACTTTGTTCGAGGGGAGAATTGTGGGGAGAAGAGTCCCCATCTTATACATAATAAATACATCTCTATTGTTACGAAGCCTCTTGGGGAAACCAAAAGTAAAATATGACTGCTTATACTCAAAGTGGACAATATTATATCATGGTAGAGGTTCGCGATTCTTAAGATCACTTCTCCTTACTCACCCGTCCAATTCAAGCATAATTCAAGAAACAATGCATGAATTACCATAGTGAAGGTTGAGAGAATTAAAAACGAAAATAATTTATATATACGGGTTTTTTAAAATAAAAAATTATAATGAATATGATATTTTAAAAATTAATAAATATTACCATTGAGATTTGGACCAACTTTTAGCCCTTTTTTTTACCTCCTCATCGTGAACAAGAATCATGCCAAAAGATTTTATCTTCTTTTATGTTCTCATTCCCTAGCTTTTCATTTAAAATAATTAAAATAATATTTTAGTTGTTGAACCTTTTGATTTAATTTATTATTATTTTTATTTTCAATATTATTTTAATATTAGTTTAGAATTAATTTAAACAAAATTGATAAAATGATAACCATTTTTATTGAAGAAAATACACGATGGGTCGATTATTCACATTTCTAAATATTAATAGAAACTATTATTATTTTTCTGAAAAATTAAATTTAATTAAGCAAGAATTTGAAAGTTATAGAGATTAAAATTAAAAGAAAATATATATTAACACTTGAGAGGACGGAAGGTCCACGGCACAAATTTTGATGCAATTAAATGGGAGAAAAAGGCGCAGAAAAGCAAGAGCACATTGCACATAAATCCACGTAATTTCAGGAGCAGGACCATCCCTTTTCCTTCCCGCTTATTCTGCAGTCGACCGCGACCGACCCGCCAATTCTCTGGGCCATCAACCCCCTGGCCCACGGGGGCCCATTTACCACTTCACTCACCAGCTCCAATTGATGACTACAGAAAGTAATTATCTGCTACCGCCCGCGCAGAATAAAATTCATAAATAATTAATTTTAAACAGTACCTATCGCCACCAACCAGTGTCAATCTCGTAGTTAACACCAACTTCTAGGAGATTCCCACGTTGTTCGAATCCAGAAATAAAGTGTGAACTCTGCTGAATTCAATTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCGTTACTGCAAGACCAACTCGCTTCACGTTTTGCTACTTCGGATATTTCTCTCTTTACGTCTAGTGAAGTACGAAATCTGGGAAAGGATGTCGGATTGGGCACCGGTAGTGATCGGAGTTGTACTGTTCGTACTGCTCTCTCCAGGGCTTCTGTTCCAGTTTCCGGGGAATAATCGACAGTTTGAGTTTGGGAGTATGAAGACCAACGGCAAGGCCATCGCCATTCACACGCTCATCTTTTTCATCCTTTACGCCGTCTTCATTCTCGCTCTCCGTATCCACATCTTTACTGGCTGA

mRNA sequence

ATGGCGGATTGGGGTCCGGTCTTTGTGGCGGTGGTGCTCTTCGTTCTCCTAACCCCCGGATTGCTCGTTCAGATGCCTGGGAAGAATCGCTTCATCGAGTTTGGGAACTTCCAGACCAGCGGAGTCTCCATTCTGGTTCATTCCGCTCTCTATTTTGCCTTGATCTGCATCTTCTTGCTGGCTGTTGGTGTTCATACCAACTCGCTTCACGTTTTGCTACTTCGGATATTTCTCTCTTTACGTCTAGTGAAGTACGAAATCTGGGAAAGGATGTCGGATTGGGCACCGGTAGTGATCGGAGTTGTACTGTTCGTACTGCTCTCTCCAGGGCTTCTGTTCCAGTTTCCGGGGAATAATCGACAGTTTGAGTTTGGGAGTATGAAGACCAACGGCAAGGCCATCGCCATTCACACGCTCATCTTTTTCATCCTTTACGCCGTCTTCATTCTCGCTCTCCGTATCCACATCTTTACTGGCTGA

Coding sequence (CDS)

ATGGCGGATTGGGGTCCGGTCTTTGTGGCGGTGGTGCTCTTCGTTCTCCTAACCCCCGGATTGCTCGTTCAGATGCCTGGGAAGAATCGCTTCATCGAGTTTGGGAACTTCCAGACCAGCGGAGTCTCCATTCTGGTTCATTCCGCTCTCTATTTTGCCTTGATCTGCATCTTCTTGCTGGCTGTTGGTGTTCATACCAACTCGCTTCACGTTTTGCTACTTCGGATATTTCTCTCTTTACGTCTAGTGAAGTACGAAATCTGGGAAAGGATGTCGGATTGGGCACCGGTAGTGATCGGAGTTGTACTGTTCGTACTGCTCTCTCCAGGGCTTCTGTTCCAGTTTCCGGGGAATAATCGACAGTTTGAGTTTGGGAGTATGAAGACCAACGGCAAGGCCATCGCCATTCACACGCTCATCTTTTTCATCCTTTACGCCGTCTTCATTCTCGCTCTCCGTATCCACATCTTTACTGGCTGA

Protein sequence

MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLLAVGVHTNSLHVLLLRIFLSLRLVKYEIWERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFILALRIHIFTG

Homology

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BLAST of Carg24282 vs. NCBI nr
Match: KAG7015947.1 (hypothetical protein SDJN02_21051, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 307.8 bits (787), Expect = 5.6e-80
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
           MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL
Sbjct: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61  AVGVHTNSLHVLLLRIFLSLRLVKYEIWERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNR 120
           AVGVHTNSLHVLLLRIFLSLRLVKYEIWERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNR
Sbjct: 61  AVGVHTNSLHVLLLRIFLSLRLVKYEIWERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNR 120

Query: 121 QFEFGSMKTNGKAIAIHTLIFFILYAVFILALRIHIFTG 160
           QFEFGSMKTNGKAIAIHTLIFFILYAVFILALRIHIFTG
Sbjct: 121 QFEFGSMKTNGKAIAIHTLIFFILYAVFILALRIHIFTG 159

[Close]

BLAST of Carg24282 vs. NCBI nr
Match: XP_022939120.1 (uncharacterized protein LOC111445120 [Cucurbita moschata])

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 158/191 (82.72%), Postives = 159/191 (83.25%), Query Frame = 0


Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
           MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL
Sbjct: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61  AVGVH--------------------------------TNSLHVLLLRIFLSLRLVKYEIW 120
           AVGVH                                TNSLHVLLLRIFLSLRLVKYEIW
Sbjct: 61  AVGVHVYMGSYVNSAEFNFSSSSSSSSSSSSSSRYCKTNSLHVLLLRIFLSLRLVKYEIW 120

Query: 121 ERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVF 160
           ERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVF
Sbjct: 121 ERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVF 180

[Close]

BLAST of Carg24282 vs. NCBI nr
Match: XP_022993368.1 (uncharacterized protein LOC111489412 [Cucurbita maxima])

HSP 1 Score: 285.8 bits (730), Expect = 2.3e-73
Identity = 157/194 (80.93%), Postives = 158/194 (81.44%), Query Frame = 0


Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
           MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL
Sbjct: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61  AVGVH-----------------------------------TNSLHVLLLRIFLSLRLVKY 120
           AVGVH                                   TNSLHVLLL IFLSLRLVKY
Sbjct: 61  AVGVHVYMGSSLVNSAEFNFSSSSSSSSSSSSSSPSRYCKTNSLHVLLLWIFLSLRLVKY 120

Query: 121 EIWERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILY 160
           EIWERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILY
Sbjct: 121 EIWERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILY 180

[Close]

BLAST of Carg24282 vs. NCBI nr
Match: XP_023551540.1 (uncharacterized protein LOC111809330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.3 bits (695), Expect = 2.6e-69
Identity = 156/223 (69.96%), Postives = 157/223 (70.40%), Query Frame = 0


Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
           MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL
Sbjct: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61  AVGVH------------------------------------------------------- 120
           AVGVH                                                       
Sbjct: 61  AVGVHVYMGSFDRDRPANSVGHQPPGPRGPIYHFIYELLNRKVNSAEFNFSSSSSSSSSS 120

Query: 121 ---------TNSLHVLLLRIFLSLRLVKYEIWERMSDWAPVVIGVVLFVLLSPGLLFQFP 160
                    T SLHVLLL IFLSLRLVKYEIWERMSDWAPVVIGVVLFVLLSPGLLFQFP
Sbjct: 121 SSSPSRYCKTKSLHVLLLWIFLSLRLVKYEIWERMSDWAPVVIGVVLFVLLSPGLLFQFP 180

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BLAST of Carg24282 vs. NCBI nr
Match: XP_038884726.1 (uncharacterized protein LOC120075418 [Benincasa hispida])

HSP 1 Score: 248.1 bits (632), Expect = 5.3e-62
Identity = 130/159 (81.76%), Postives = 137/159 (86.16%), Query Frame = 0


Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
           MADWGPVFVAVVLFVLLTPGLLVQMPGKNRF+EFGNFQTSGVSILVHS LYFALICIFLL
Sbjct: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFVEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61  AVGVHTNSLHVLLLRIFLSLRLVKYEIWERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNR 120
           AV VH              +  V Y+I E MSDWAPVVIGVVLFVLLSPGLLFQFPGNNR
Sbjct: 61  AVHVH--------------VCFVNYDICESMSDWAPVVIGVVLFVLLSPGLLFQFPGNNR 120

Query: 121 QFEFGSMKTNGKAIAIHTLIFFILYAVFILALRIHIFTG 160
           QFEFGSMKTNGKA+AIHTLIFFILY+VFILAL +HI+TG
Sbjct: 121 QFEFGSMKTNGKAVAIHTLIFFILYSVFILALHVHIYTG 145

[Close]

BLAST of Carg24282 vs. ExPASy TrEMBL
Match: A0A6J1FLS0 (uncharacterized protein LOC111445120 OS=Cucurbita moschata OX=3662 GN=LOC111445120 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.8e-75
Identity = 158/191 (82.72%), Postives = 159/191 (83.25%), Query Frame = 0


Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
           MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL
Sbjct: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61  AVGVH--------------------------------TNSLHVLLLRIFLSLRLVKYEIW 120
           AVGVH                                TNSLHVLLLRIFLSLRLVKYEIW
Sbjct: 61  AVGVHVYMGSYVNSAEFNFSSSSSSSSSSSSSSRYCKTNSLHVLLLRIFLSLRLVKYEIW 120

Query: 121 ERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVF 160
           ERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVF
Sbjct: 121 ERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVF 180

[Close]

BLAST of Carg24282 vs. ExPASy TrEMBL
Match: A0A6J1K207 (uncharacterized protein LOC111489412 OS=Cucurbita maxima OX=3661 GN=LOC111489412 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 157/194 (80.93%), Postives = 158/194 (81.44%), Query Frame = 0


Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
           MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL
Sbjct: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61  AVGVH-----------------------------------TNSLHVLLLRIFLSLRLVKY 120
           AVGVH                                   TNSLHVLLL IFLSLRLVKY
Sbjct: 61  AVGVHVYMGSSLVNSAEFNFSSSSSSSSSSSSSSPSRYCKTNSLHVLLLWIFLSLRLVKY 120

Query: 121 EIWERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILY 160
           EIWERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILY
Sbjct: 121 EIWERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILY 180

[Close]

BLAST of Carg24282 vs. ExPASy TrEMBL
Match: A0A1S3B371 (uncharacterized protein LOC103485472 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485472 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.4e-59
Identity = 126/159 (79.25%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
           MADWGPVFVAV+LFVLLTPGLLVQMPGK+RF+EFGNFQTSGVSILVHS LYFALICIFLL
Sbjct: 1   MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61  AVGVHTNSLHVLLLRIFLSLRLVKYEIWERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNR 120
           AV  H  +L                   E MSDWAPVVIGVVLFVLLSPGLLFQFPGNNR
Sbjct: 61  AVHEHICNLKN-----------------ENMSDWAPVVIGVVLFVLLSPGLLFQFPGNNR 120

Query: 121 QFEFGSMKTNGKAIAIHTLIFFILYAVFILALRIHIFTG 160
           QFEFGSMKTNGKA+AIHTLIFF+LYAVFILAL IHI+TG
Sbjct: 121 QFEFGSMKTNGKAVAIHTLIFFVLYAVFILALHIHIYTG 142

[Close]

BLAST of Carg24282 vs. ExPASy TrEMBL
Match: A0A6P4B5Q9 (uncharacterized protein LOC107427943 OS=Ziziphus jujuba OX=326968 GN=LOC107427943 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 6.7e-55
Identity = 115/159 (72.33%), Postives = 130/159 (81.76%), Query Frame = 0


Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
           M+DWGPVFVAVVLF+LLTPGLL+Q+PGK+RF+EFGNFQTSGVSILVHS LYFALICIFLL
Sbjct: 1   MSDWGPVFVAVVLFILLTPGLLIQIPGKSRFVEFGNFQTSGVSILVHSVLYFALICIFLL 60

Query: 61  AVGVHTNSLHVLLLRIFLSLRLVKYEIWERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNR 120
           A+GVH          IF             M+DWAPVVIGVVLFVLL PGLLFQFPG+++
Sbjct: 61  AIGVH----------IFSGFS-------SAMADWAPVVIGVVLFVLLQPGLLFQFPGHHK 120

Query: 121 QFEFGSMKTNGKAIAIHTLIFFILYAVFILALRIHIFTG 160
           Q EFGSMKTNGKAIA+HTLIFF LY +FILAL +HI+TG
Sbjct: 121 QLEFGSMKTNGKAIAVHTLIFFALYCIFILALHVHIYTG 142

[Close]

BLAST of Carg24282 vs. ExPASy TrEMBL
Match: A0A6J1BIX5 (uncharacterized protein LOC110427923 OS=Herrania umbratica OX=108875 GN=LOC110427923 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.4e-54
Identity = 113/159 (71.07%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
           M+DWGPVFVAVVLF+LLTPGLL+Q+PGK+RFIEFGNFQTSG+SILVHS +YFALICIFLL
Sbjct: 1   MSDWGPVFVAVVLFILLTPGLLIQVPGKSRFIEFGNFQTSGLSILVHSIIYFALICIFLL 60

Query: 61  AVGVHTNSLHVLLLRIFLSLRLVKYEIWERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNR 120
           AVGVH  S   L+                 M+DWAPV++GVVLFVLLSPGLLF FPGN++
Sbjct: 61  AVGVHMYSGKFLV-----------------MADWAPVLVGVVLFVLLSPGLLFSFPGNSK 120

Query: 121 QFEFGSMKTNGKAIAIHTLIFFILYAVFILALRIHIFTG 160
           Q EFGSMKTNGKAIAIHTL+FF +YAV ILA+ +HI+TG
Sbjct: 121 QLEFGSMKTNGKAIAIHTLLFFAIYAVLILAVHLHIYTG 142

[Close]

BLAST of Carg24282 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 192.6 bits (488), Expect = 2.4e-49
Identity = 94/159 (59.12%), Postives = 118/159 (74.21%), Query Frame = 0


Query: 1   MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
           M DWGPVFVAV LFVLLTPGLL+Q+PG+ R +EFG FQTSG+S++VH+ +YF L+CI LL
Sbjct: 1   MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61  AVGVHTNSLHVLLLRIFLSLRLVKYEIWERMSDWAPVVIGVVLFVLLSPGLLFQFPGNNR 120
           A+ +H  +L                     M+DWAPV++GVVLFV+LSPGLLF  PGNNR
Sbjct: 61  ALQIHICNL-----------------FSTSMADWAPVLVGVVLFVILSPGLLFSLPGNNR 120

Query: 121 QFEFGSMKTNGKAIAIHTLIFFILYAVFILALRIHIFTG 160
             +FG +KTNGKAIA+HTLIFF +Y + ILAL +HI+TG
Sbjct: 121 TVDFGGLKTNGKAIAVHTLIFFAIYTILILALNLHIYTG 142

[Close]

BLAST of Carg24282 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 102.1 bits (253), Expect = 4.3e-22
Identity = 43/65 (66.15%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          M+DWGPV V V+LFV+LTPGLL Q+PG+ +++EFGNFQTS VS++VHS LYF+L+C+FLL
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AVGVH 66
          A+ +H
Sbjct: 61 ALKIH 65

[Close]

BLAST of Carg24282 vs. TAIR 10
Match: AT5G40970.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 100.9 bits (250), Expect = 9.7e-22
Identity = 46/69 (66.67%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 91  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAIAIHTLIFFILYAVFIL 150
           M+DWAPV++GVVLFV+LSPGLLF  PG++   +FG MKTNGKAIA+HTLIFF  Y + IL
Sbjct: 1   MADWAPVLVGVVLFVILSPGLLFSLPGHHHTLQFGGMKTNGKAIAVHTLIFFAAYTILIL 60

Query: 151 ALRIHIFTG 160
           A+ +HI TG
Sbjct: 61  AVNLHITTG 69

[Close]

BLAST of Carg24282 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-18
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          MADWGPV +AV+LFV+L+PGLL Q+P   R +EFGN QTSG SILVH+ ++F LI IF +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AVGVHTNS 69
          A+ VH  S
Sbjct: 61 AINVHIYS 68

[Close]

BLAST of Carg24282 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-18
Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          MADWGPV VAV+LFVLLTPGLL Q+P + R +EFGN QTSG SILVH+ ++F LI IF +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AVGVHT-NSLHVLLLRIFLSLRL 83
          A+ +H       L L  F+ +R+
Sbjct: 61 AIRLHIYTGTRQLALVWFIGIRV 83

The following BLAST results are available for this feature:

BLAST of Carg24282 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015947.1	5.6e-80	100.00	hypothetical protein SDJN02_21051, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022939120.1	1.2e-74	82.72	uncharacterized protein LOC111445120 [Cucurbita moschata]	[more]
XP_022993368.1	2.3e-73	80.93	uncharacterized protein LOC111489412 [Cucurbita maxima]	[more]
XP_023551540.1	2.6e-69	69.96	uncharacterized protein LOC111809330 [Cucurbita pepo subsp. pepo]	[more]
XP_038884726.1	5.3e-62	81.76	uncharacterized protein LOC120075418 [Benincasa hispida]	[more]

BLAST of Carg24282 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24282 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FLS0	5.8e-75	82.72	uncharacterized protein LOC111445120 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A6J1K207	1.1e-73	80.93	uncharacterized protein LOC111489412 OS=Cucurbita maxima OX=3661 GN=LOC111489412...	[more]
A0A1S3B371	3.4e-59	79.25	uncharacterized protein LOC103485472 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6P4B5Q9	6.7e-55	72.33	uncharacterized protein LOC107427943 OS=Ziziphus jujuba OX=326968 GN=LOC10742794...	[more]
A0A6J1BIX5	7.4e-54	71.07	uncharacterized protein LOC110427923 OS=Herrania umbratica OX=108875 GN=LOC11042...	[more]

BLAST of Carg24282 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27030.1	2.4e-49	59.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G08391.1	4.3e-22	66.15	Protein of unknown function (DUF 3339)	[more]
AT5G40970.1	9.7e-22	66.67	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	1.0e-18	61.76	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	1.7e-18	56.63	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 91..156 e-value: 9.0E-32 score: 109.1 coord: 1..66 e-value: 2.2E-33 score: 114.2
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 91..159
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..66
None	No IPR available	PANTHER	PTHR33128:SF71	BNAC07G48990D PROTEIN	coord: 1..66
None	No IPR available	PANTHER	PTHR33128:SF71	BNAC07G48990D PROTEIN	coord: 91..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24282-RA	Carg24282-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane