Carg24205 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24205
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cytochrome c oxidase subunit 3
Location	Carg_Chr12: 8358278 .. 8358532 (-)
RNA-Seq Expression	Carg24205
Synteny	Carg24205

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATATTATCAAGCACCCTTCACTATTTCGGATAGTATTTATGGTTCTACCTTTTTCTTAGCAACTAGCTTTCATGGTTTTCATGTGATTATAGGTACTCTTTTCTTGATCATATGTGGTATTCGCCAATATCTTGGTCATCTGACCAAGGAGCATCACGTTGGCTTTGAAGCAGCTGCATGGTACTGGCATTTTGTAGACGTGGTTCGGTTATTCCTATTTGTCTCTATCTATTGGTGGGGAGGTATATGA

mRNA sequence

ATGGAATATTATCAAGCACCCTTCACTATTTCGGATAGTACTCTTTTCTTGATCATATGTGGTATTCGCCAATATCTTGGTCATCTGACCAAGGAGCATCACGTTGGCTTTGAAGCAGCTGCATGGTACTGGCATTTTGTAGACGTGGTTCGGTTATTCCTATTTGTCTCTATCTATTGGTGGGGAGGTATATGA

Coding sequence (CDS)

ATGGAATATTATCAAGCACCCTTCACTATTTCGGATAGTACTCTTTTCTTGATCATATGTGGTATTCGCCAATATCTTGGTCATCTGACCAAGGAGCATCACGTTGGCTTTGAAGCAGCTGCATGGTACTGGCATTTTGTAGACGTGGTTCGGTTATTCCTATTTGTCTCTATCTATTGGTGGGGAGGTATATGA

Protein sequence

MEYYQAPFTISDSTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVRLFLFVSIYWWGGI

Homology

[Close]

BLAST of Carg24205 vs. NCBI nr
Match: KAG7020921.1 (Cytochrome c oxidase subunit 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.7 bits (356), Expect = 2.1e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MEYYQAPFTISDSTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVRLFLFVSIYW 60
          MEYYQAPFTISDSTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVRLFLFVSIYW
Sbjct: 1  MEYYQAPFTISDSTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVRLFLFVSIYW 60

Query: 61 WGGI 65
          WGGI
Sbjct: 61 WGGI 64

[Close]

BLAST of Carg24205 vs. NCBI nr
Match: AHX81461.1 (cytochrome c oxidase subunit 3 [Licania sprucei] >AHX81480.1 cytochrome c oxidase subunit 3 [Hirtella physophora] >AHX81483.1 cytochrome c oxidase subunit 3 [Chrysobalanus icaco] >AHX81512.1 cytochrome c oxidase subunit 3 [Licania alba] >AHX81524.1 cytochrome c oxidase subunit 3 [Licania heteromorpha] >AHX81536.1 cytochrome c oxidase subunit 3 [Hirtella racemosa] >AHX81539.1 cytochrome c oxidase subunit 3 [Parinari campestris] >AHX81546.1 cytochrome c oxidase subunit 3 [Couepia guianensis])

HSP 1 Score: 129.8 bits (325), Expect = 8.4e-27
Identity = 64/84 (76.19%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAPFTISDS                    TLFLIICGIRQYLGHLTKEHHVGFEAA
Sbjct: 182 MEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAA 241

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVVRLFLFVSIYWWGGI
Sbjct: 242 AWYWHFVDVVRLFLFVSIYWWGGI 265

[Close]

BLAST of Carg24205 vs. NCBI nr
Match: XP_023520730.1 (uncharacterized protein LOC111784179 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.8 bits (325), Expect = 8.4e-27
Identity = 64/84 (76.19%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAPFTISDS                    TLFLIICGIRQYLGHLTKEHHVGFEAA
Sbjct: 361 MEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAA 420

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVVRLFLFVSIYWWGGI
Sbjct: 421 AWYWHFVDVVRLFLFVSIYWWGGI 444

[Close]

BLAST of Carg24205 vs. NCBI nr
Match: XP_022975233.1 (uncharacterized protein LOC111474342 [Cucurbita maxima])

HSP 1 Score: 129.8 bits (325), Expect = 8.4e-27
Identity = 64/84 (76.19%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAPFTISDS                    TLFLIICGIRQYLGHLTKEHHVGFEAA
Sbjct: 360 MEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAA 419

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVVRLFLFVSIYWWGGI
Sbjct: 420 AWYWHFVDVVRLFLFVSIYWWGGI 443

[Close]

BLAST of Carg24205 vs. NCBI nr
Match: QXE45619.1 (cytochrome c oxidase subunit 3 [Pachyrhizus erosus])

HSP 1 Score: 129.8 bits (325), Expect = 8.4e-27
Identity = 64/84 (76.19%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAPFTISDS                    TLFLIICGIRQYLGHLTKEHHVGFEAA
Sbjct: 182 MEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAA 241

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVVRLFLFVSIYWWGGI
Sbjct: 242 AWYWHFVDVVRLFLFVSIYWWGGI 265

[Close]

BLAST of Carg24205 vs. ExPASy Swiss-Prot
Match: P92514 (Cytochrome c oxidase subunit 3 OS=Arabidopsis thaliana OX=3702 GN=COX3 PE=2 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 9.3e-29
Identity = 63/84 (75.00%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAPFTISDS                    TLFLIICGIRQYLGHLTKEHHVGFEAA
Sbjct: 182 MEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAA 241

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVV LFLFVSIYWWGGI
Sbjct: 242 AWYWHFVDVVWLFLFVSIYWWGGI 265

[Close]

BLAST of Carg24205 vs. ExPASy Swiss-Prot
Match: P14853 (Cytochrome c oxidase subunit 3 OS=Glycine max OX=3847 GN=COX3 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 9.3e-29
Identity = 63/84 (75.00%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAPFTISDS                    TLFLIICGIRQYLGHLTKEHHVGFEAA
Sbjct: 182 MEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAA 241

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVV LFLFVSIYWWGGI
Sbjct: 242 AWYWHFVDVVWLFLFVSIYWWGGI 265

[Close]

BLAST of Carg24205 vs. ExPASy Swiss-Prot
Match: P08745 (Cytochrome c oxidase subunit 3 OS=Oenothera berteroana OX=3950 GN=COX3 PE=3 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 7.9e-28
Identity = 62/84 (73.81%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAP TISDS                    TLF IICGIRQYLGHLTKEHHVGFEAA
Sbjct: 182 MEYYQAPPTISDSIYGSTFYLATGFHGFHVIIGTLFSIICGIRQYLGHLTKEHHVGFEAA 241

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVVRLFLFVSIYWWGGI
Sbjct: 242 AWYWHFVDVVRLFLFVSIYWWGGI 265

[Close]

BLAST of Carg24205 vs. ExPASy Swiss-Prot
Match: Q03227 (Cytochrome c oxidase subunit 3 OS=Vicia faba OX=3906 GN=COX3 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.0e-27
Identity = 61/84 (72.62%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAPFTISDS                    TLFLIICGIRQYLG +TKEHHVGFEAA
Sbjct: 182 MEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGQMTKEHHVGFEAA 241

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVVRLF FVSIYWWGGI
Sbjct: 242 AWYWHFVDVVRLFPFVSIYWWGGI 265

[Close]

BLAST of Carg24205 vs. ExPASy Swiss-Prot
Match: P14852 (Cytochrome c oxidase subunit 3 OS=Oryza sativa subsp. indica OX=39946 GN=COX3 PE=3 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-27
Identity = 60/84 (71.43%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAP TISDS                    TLFLI+CGIRQYLGHLTK+HHVGFEAA
Sbjct: 182 MEYYQAPSTISDSIYGSTFFLATGFHGFHVIIGTLFLIVCGIRQYLGHLTKKHHVGFEAA 241

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVVRLF FVSIYWWGGI
Sbjct: 242 AWYWHFVDVVRLFPFVSIYWWGGI 265

[Close]

BLAST of Carg24205 vs. ExPASy TrEMBL
Match: E9KZN7 (Cytochrome c oxidase subunit 3 OS=Vigna radiata var. radiata OX=3916 GN=cox3 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.1e-27
Identity = 64/84 (76.19%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAPFTISDS                    TLFLIICGIRQYLGHLTKEHHVGFEAA
Sbjct: 182 MEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAA 241

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVVRLFLFVSIYWWGGI
Sbjct: 242 AWYWHFVDVVRLFLFVSIYWWGGI 265

[Close]

BLAST of Carg24205 vs. ExPASy TrEMBL
Match: A0A0R0H600 (Cytochrome c oxidase subunit 3 OS=Glycine max OX=3847 GN=100780641 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.1e-27
Identity = 64/84 (76.19%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAPFTISDS                    TLFLIICGIRQYLGHLTKEHHVGFEAA
Sbjct: 182 MEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAA 241

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVVRLFLFVSIYWWGGI
Sbjct: 242 AWYWHFVDVVRLFLFVSIYWWGGI 265

[Close]

BLAST of Carg24205 vs. ExPASy TrEMBL
Match: E9P2B2 (Cytochrome c oxidase subunit 3 OS=Ricinus communis OX=3988 GN=cox3 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.1e-27
Identity = 64/84 (76.19%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAPFTISDS                    TLFLIICGIRQYLGHLTKEHHVGFEAA
Sbjct: 182 MEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAA 241

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVVRLFLFVSIYWWGGI
Sbjct: 242 AWYWHFVDVVRLFLFVSIYWWGGI 265

[Close]

BLAST of Carg24205 vs. ExPASy TrEMBL
Match: A0A023T2P2 (Cytochrome c oxidase subunit 3 OS=Hirtella racemosa OX=1125932 GN=cox3 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.1e-27
Identity = 64/84 (76.19%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAPFTISDS                    TLFLIICGIRQYLGHLTKEHHVGFEAA
Sbjct: 182 MEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAA 241

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVVRLFLFVSIYWWGGI
Sbjct: 242 AWYWHFVDVVRLFLFVSIYWWGGI 265

[Close]

BLAST of Carg24205 vs. ExPASy TrEMBL
Match: A0A6J1IIM7 (Cytochrome c oxidase subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111474342 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.1e-27
Identity = 64/84 (76.19%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAPFTISDS                    TLFLIICGIRQYLGHLTKEHHVGFEAA
Sbjct: 360 MEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAA 419

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVVRLFLFVSIYWWGGI
Sbjct: 420 AWYWHFVDVVRLFLFVSIYWWGGI 443

[Close]

BLAST of Carg24205 vs. TAIR 10
Match: AT2G07687.1 (Cytochrome c oxidase, subunit III )

HSP 1 Score: 126.7 bits (317), Expect = 6.6e-30
Identity = 63/84 (75.00%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAPFTISDS                    TLFLIICGIRQYLGHLTKEHHVGFEAA
Sbjct: 182 MEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAA 241

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVV LFLFVSIYWWGGI
Sbjct: 242 AWYWHFVDVVWLFLFVSIYWWGGI 265

[Close]

BLAST of Carg24205 vs. TAIR 10
Match: ATMG00730.1 (cytochrome c oxidase subunit 3 )

HSP 1 Score: 126.7 bits (317), Expect = 6.6e-30
Identity = 63/84 (75.00%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1   MEYYQAPFTISDS--------------------TLFLIICGIRQYLGHLTKEHHVGFEAA 60
           MEYYQAPFTISDS                    TLFLIICGIRQYLGHLTKEHHVGFEAA
Sbjct: 182 MEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAA 241

Query: 61  AWYWHFVDVVRLFLFVSIYWWGGI 65
           AWYWHFVDVV LFLFVSIYWWGGI
Sbjct: 242 AWYWHFVDVVWLFLFVSIYWWGGI 265

The following BLAST results are available for this feature:

BLAST of Carg24205 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020921.1	2.1e-30	100.00	Cytochrome c oxidase subunit 3, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
AHX81461.1	8.4e-27	76.19	cytochrome c oxidase subunit 3 [Licania sprucei] >AHX81480.1 cytochrome c oxidas...	[more]
XP_023520730.1	8.4e-27	76.19	uncharacterized protein LOC111784179 [Cucurbita pepo subsp. pepo]	[more]
XP_022975233.1	8.4e-27	76.19	uncharacterized protein LOC111474342 [Cucurbita maxima]	[more]
QXE45619.1	8.4e-27	76.19	cytochrome c oxidase subunit 3 [Pachyrhizus erosus]	[more]

BLAST of Carg24205 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92514	9.3e-29	75.00	Cytochrome c oxidase subunit 3 OS=Arabidopsis thaliana OX=3702 GN=COX3 PE=2 SV=2	[more]
P14853	9.3e-29	75.00	Cytochrome c oxidase subunit 3 OS=Glycine max OX=3847 GN=COX3 PE=2 SV=1	[more]
P08745	7.9e-28	73.81	Cytochrome c oxidase subunit 3 OS=Oenothera berteroana OX=3950 GN=COX3 PE=3 SV=2	[more]
Q03227	1.0e-27	72.62	Cytochrome c oxidase subunit 3 OS=Vicia faba OX=3906 GN=COX3 PE=3 SV=1	[more]
P14852	2.3e-27	71.43	Cytochrome c oxidase subunit 3 OS=Oryza sativa subsp. indica OX=39946 GN=COX3 PE...	[more]

BLAST of Carg24205 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E9KZN7	4.1e-27	76.19	Cytochrome c oxidase subunit 3 OS=Vigna radiata var. radiata OX=3916 GN=cox3 PE=...	[more]
A0A0R0H600	4.1e-27	76.19	Cytochrome c oxidase subunit 3 OS=Glycine max OX=3847 GN=100780641 PE=3 SV=1	[more]
E9P2B2	4.1e-27	76.19	Cytochrome c oxidase subunit 3 OS=Ricinus communis OX=3988 GN=cox3 PE=3 SV=1	[more]
A0A023T2P2	4.1e-27	76.19	Cytochrome c oxidase subunit 3 OS=Hirtella racemosa OX=1125932 GN=cox3 PE=3 SV=1	[more]
A0A6J1IIM7	4.1e-27	76.19	Cytochrome c oxidase subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111474342 PE=3 ...	[more]

BLAST of Carg24205 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07687.1	6.6e-30	75.00	Cytochrome c oxidase, subunit III	[more]
ATMG00730.1	6.6e-30	75.00	cytochrome c oxidase subunit 3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013833	Cytochrome c oxidase, subunit III, 4-helical bundle	GENE3D	1.20.120.80		coord: 12..63 e-value: 2.1E-15 score: 58.8
IPR000298	Cytochrome c oxidase subunit III-like	PFAM	PF00510	COX3	coord: 14..62 e-value: 1.8E-18 score: 67.3
IPR000298	Cytochrome c oxidase subunit III-like	PROSITE	PS50253	COX3	coord: 14..63 score: 12.172323
None	No IPR available	PANTHER	PTHR11403:SF7	CYTOCHROME C OXIDASE SUBUNIT 3	coord: 14..62
IPR024791	Cytochrome c oxidase subunit III	PANTHER	PTHR11403	CYTOCHROME C OXIDASE SUBUNIT III	coord: 14..62
IPR035973	Cytochrome c oxidase subunit III-like superfamily	SUPERFAMILY	81452	Cytochrome c oxidase subunit III-like	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24205-RA	Carg24205-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0019646	aerobic electron transport chain
biological_process	GO:0022904	respiratory electron transport chain
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0004129	cytochrome-c oxidase activity
molecular_function	GO:0009055	electron transfer activity