Carg24196 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24196
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationCarg_Chr12: 8447373 .. 8449814 (+)
RNA-Seq ExpressionCarg24196
SyntenyCarg24196
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCTTCAAGTCGGCAGTTGCAGAGAATTAGGGCAAGATAGTTTCACCGCTAGCTTAATTCAAACCAACTTCACTGCGAAAGGACATCATTACCTTTTCCTTAATACTCCACTGGCCAGCCGAAGGCTCAGTTTGGGGAATTTGAATTCTCAGAAGCAGATTATTAGAGACCTGAAGGTTTCTCCACGGTTTAAGCTTCAGTGTTTTTCAAAAACGGTGTTTACGCCTTCCAAAAGATTATCGACTAACGGGAAGAAGAAAAGCTACGGCGGCGTATTACCTTCAATCTTACGCTCTTTGAAGTCATCCAGCGATATCGGGAGTATTCTAAATTCCTTGTGCCAAAATCTGAGTCCCAAAGAGCAAACCGTGATACTTAAAGAACAGCGTCAGTGGGAAAGAGTTCTTCAGGTATTCCAGTGGTTCAAATCTCAGAAAGATTACGTTCCCAATGTAATTCATTACAACATTGTGCTTCGAGCACTTGGGCGAGCTCAAAAATGGGATGAATTAAGGCTTTGTTGGAATGAAATGGCTGAAAATGGCATCATTCCATCAAATAATACTTATGGAATGCTTGTTGATGTCTATGGCAAGGCAGGTCTTGTAAAAGAGGCACTTCTCTGGATCAAGCATATGAAAGTAAGGGGCATTTTTCCAGACGAGGTAACCATGAACACTGTAGTTCGTGTCTTAAAAGATGCTGGAGAATTTGATTCTGCTGATAAATTCTACAAGGATTGGTGCAGGGGGGTGGTTGAGCTGAATGATTCGATTTGAATTCAAGGGTTGATGATCTTGGTTTAAATTCTACAACTGAACCAATTACTCTTAAACATTTTTTGTTGACTGAGCTTTTCAGGACAGGCATGAAAATTCCCAATCGACAAGCGTCACCGGAGGTAGATAATTGCGCTCGGAAGCCAAGACTAACGTCTACGTTCAATACGTTGATAGATTTGTATGGCAAGGCAGGGCGTCTCAAGGATGCAGCTAATGTGTTTGCTGAAATGCTTAAATCAGGTATCCCAATGATACCTATTACGTTTAAGCCTATGACTTCGCTTTACCTGTAGGGAGTCATGGGACATTCTTGGCAGAGGCTGAACTTATCGCTGATACAGTAAAAATTGGCAAGAACTGGATGGAGCCCCACAGATACCGAAATTAGACAATATTCTCTTTTTCTAGTAAAGACTGATGAGCGTAAGGAATATTGATTGGTATGGAGACGTCAAGGTGTTCTAATAAGCACTGAGACGAATTTGCGAGAGGACTAAGTTTGTCATTTCCTGTCTGGAGAGATAGAGCTCACTTTGATCAGATATATACTGTTAAGAGCAATATAGTTGAAGTATGTGGAGAGGTGAATATGCTTGCAAATGGGAACACATTACATGTTCTTGTCCATACGATGGACATGTCACTTCCACTTGTGTCAACCACTGAGAGCATGTAACTTACTTACAATTAACTGCGGCTGCTCGGAGACCGAGACGACTACGATCTACTTTTCTGGAGAAAATATGTCGATTGAAGGGCTAATCTGGATTGCACCAGATATGATATTGACTGCCAGATATAGATGCGTGATGCTGAAAAGGGTTTGTGGTCTGAAGCTGAGAATGTTTTCCTATGGAAAAAGGATTTGGTGGGTCAAAATCTGGATGTTATGGAATATAATGTCATGATAAAAGCATATGGTCAAGTGGCTAGTGACCTTGAATGACAATGAGCGTTTCTTCTTCCAAGGGCATGAAAAACACGTGCAACTTATGCGCTGATTGAATGGACGTTACATATTCTCTAGATTCAGATGTGTATGACCATCTCAGGCGGTGATTTAGTGTTGATGAGGCGATAGACGTACCAGTTTTGACCGAAAATGCATCGAATATTGGGTTTAATAACGCGAACTGGTCAACCACATTTCTCTGCTGTCATACTGGCAAGCTATATGACTCGTCTAGACATAAGATGATCAGTACTGCGTGTTCGTCATGTATATGATTTCGGGATCATTGAAGGTAAATGCACAGATCGGAATCACAAAGAAATCTTGTAATGAGCGTCTGATTACATGGATTTAGCTGAAGCTGAAATGGTTCTGTAGTAGAGAGAGCACTTAAATACTTTCACTTGATGAAGGGAGCTGGCATTGCAGAAAACCAAATCGTGCTGACATCCCTGATAAAGGCGTTTAGTAAGGTGGGTAGCGTGGAAGGTGCCAAGGCAATGTACAATAGGATGAAGAACATGGAGAACGGTGTCGATACCATCGCATCAAATACTATGATCAATCTATACACCGATCTCGGGATGGTATCTGAGGCCAAACGAGTTTTCGAAGACTTGCGAGAACGAGGCTGTGCAGATGGCGTATCCTTCGCAACTTTGATATATCTTTTGATAAAACACGGGCGGAAGCATGGCATCTGA

mRNA sequence

ATGATGCTTCAAGTCGGCAGTTGCAGAGAATTAGGGCAAGATAGTTTCACCGCTAGCTTAATTCAAACCAACTTCACTGCGAAAGGACATCATTACCTTTTCCTTAATACTCCACTGGCCAGCCGAAGGCTCAGTTTGGGGAATTTGAATTCTCAGAAGCAGATTATTAGAGACCTGAAGGTTTCTCCACGGTTTAAGCTTCAGTGTTTTTCAAAAACGGTGTTTACGCCTTCCAAAAGATTATCGACTAACGGGAAGAAGAAAAGCTACGGCGGCGTATTACCTTCAATCTTACGCTCTTTGAAGTCATCCAGCGATATCGGGAGTATTCTAAATTCCTTGTGCCAAAATCTGAGTCCCAAAGAGCAAACCGTGATACTTAAAGAACAGCGTCAGTGGGAAAGAGTTCTTCAGGTATTCCAGTGGTTCAAATCTCAGAAAGATTACGTTCCCAATGTAATTCATTACAACATTGTGCTTCGAGCACTTGGGCGAGCTCAAAAATGGGATGAATTAAGGCTTTGTTGGAATGAAATGGCTGAAAATGGCATCATTCCATCAAATAATACTTATGGAATGCTTGTTGATGTCTATGGCAAGGCAGGTCTTGTAAAAGAGGCACTTCTCTGGATCAAGCATATGAAAGTAAGGGGCATTTTTCCAGACGAGGTAACCATGAACACTGTAGTTCGTGTCTTAAAAGATGCTGGAGAATTTGATTCTGCTGATAAATTCTACAAGGATTGGACAGGCATGAAAATTCCCAATCGACAAGCGTCACCGGAGGTAGATAATTGCGCTCGGAAGCCAAGACTAACGTCTACGTTCAATACGTTGATAGATTTGTATGGCAAGGCAGGGCGTCTCAAGGATGCAGCTAATGTGTTTGCTGAAATGCTTAAATCAGAGAGAGCACTTAAATACTTTCACTTGATGAAGGGAGCTGGCATTGCAGAAAACCAAATCGTGCTGACATCCCTGATAAAGGCGTTTAGTAAGGTGGGTAGCGTGGAAGGTGCCAAGGCAATGTACAATAGGATGAAGAACATGGAGAACGGTGTCGATACCATCGCATCAAATACTATGATCAATCTATACACCGATCTCGGGATGGTATCTGAGGCCAAACGAGTTTTCGAAGACTTGCGAGAACGAGGCTGTGCAGATGGCGTATCCTTCGCAACTTTGATATATCTTTTGATAAAACACGGGCGGAAGCATGGCATCTGA

Coding sequence (CDS)

ATGATGCTTCAAGTCGGCAGTTGCAGAGAATTAGGGCAAGATAGTTTCACCGCTAGCTTAATTCAAACCAACTTCACTGCGAAAGGACATCATTACCTTTTCCTTAATACTCCACTGGCCAGCCGAAGGCTCAGTTTGGGGAATTTGAATTCTCAGAAGCAGATTATTAGAGACCTGAAGGTTTCTCCACGGTTTAAGCTTCAGTGTTTTTCAAAAACGGTGTTTACGCCTTCCAAAAGATTATCGACTAACGGGAAGAAGAAAAGCTACGGCGGCGTATTACCTTCAATCTTACGCTCTTTGAAGTCATCCAGCGATATCGGGAGTATTCTAAATTCCTTGTGCCAAAATCTGAGTCCCAAAGAGCAAACCGTGATACTTAAAGAACAGCGTCAGTGGGAAAGAGTTCTTCAGGTATTCCAGTGGTTCAAATCTCAGAAAGATTACGTTCCCAATGTAATTCATTACAACATTGTGCTTCGAGCACTTGGGCGAGCTCAAAAATGGGATGAATTAAGGCTTTGTTGGAATGAAATGGCTGAAAATGGCATCATTCCATCAAATAATACTTATGGAATGCTTGTTGATGTCTATGGCAAGGCAGGTCTTGTAAAAGAGGCACTTCTCTGGATCAAGCATATGAAAGTAAGGGGCATTTTTCCAGACGAGGTAACCATGAACACTGTAGTTCGTGTCTTAAAAGATGCTGGAGAATTTGATTCTGCTGATAAATTCTACAAGGATTGGACAGGCATGAAAATTCCCAATCGACAAGCGTCACCGGAGGTAGATAATTGCGCTCGGAAGCCAAGACTAACGTCTACGTTCAATACGTTGATAGATTTGTATGGCAAGGCAGGGCGTCTCAAGGATGCAGCTAATGTGTTTGCTGAAATGCTTAAATCAGAGAGAGCACTTAAATACTTTCACTTGATGAAGGGAGCTGGCATTGCAGAAAACCAAATCGTGCTGACATCCCTGATAAAGGCGTTTAGTAAGGTGGGTAGCGTGGAAGGTGCCAAGGCAATGTACAATAGGATGAAGAACATGGAGAACGGTGTCGATACCATCGCATCAAATACTATGATCAATCTATACACCGATCTCGGGATGGTATCTGAGGCCAAACGAGTTTTCGAAGACTTGCGAGAACGAGGCTGTGCAGATGGCGTATCCTTCGCAACTTTGATATATCTTTTGATAAAACACGGGCGGAAGCATGGCATCTGA

Protein sequence

MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQKQIIRDLKVSPRFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSPKEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMAENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFDSADKFYKDWTGMKIPNRQASPEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKSERALKYFHLMKGAGIAENQIVLTSLIKAFSKVGSVEGAKAMYNRMKNMENGVDTIASNTMINLYTDLGMVSEAKRVFEDLRERGCADGVSFATLIYLLIKHGRKHGI
Homology
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BLAST of Carg24196 vs. NCBI nr
Match: KAG7020930.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 818.5 bits (2113), Expect = 2.5e-233
Identity = 409/409 (100.00%), Postives = 409/409 (100.00%), Query Frame = 0 

Query: 1   MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQKQIIRDLK 60
           MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQKQIIRDLK
Sbjct: 1   MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQKQIIRDLK 60

Query: 61  VSPRFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSP 120
           VSPRFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSP
Sbjct: 61  VSPRFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSP 120

Query: 121 KEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMA 180
           KEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMA
Sbjct: 121 KEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMA 180

Query: 181 ENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFD 240
           ENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFD
Sbjct: 181 ENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFD 240

Query: 241 SADKFYKDWTGMKIPNRQASPEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEML 300
           SADKFYKDWTGMKIPNRQASPEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEML
Sbjct: 241 SADKFYKDWTGMKIPNRQASPEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEML 300

Query: 301 KSERALKYFHLMKGAGIAENQIVLTSLIKAFSKVGSVEGAKAMYNRMKNMENGVDTIASN 360
           KSERALKYFHLMKGAGIAENQIVLTSLIKAFSKVGSVEGAKAMYNRMKNMENGVDTIASN
Sbjct: 301 KSERALKYFHLMKGAGIAENQIVLTSLIKAFSKVGSVEGAKAMYNRMKNMENGVDTIASN 360

Query: 361 TMINLYTDLGMVSEAKRVFEDLRERGCADGVSFATLIYLLIKHGRKHGI 410
           TMINLYTDLGMVSEAKRVFEDLRERGCADGVSFATLIYLLIKHGRKHGI
Sbjct: 361 TMINLYTDLGMVSEAKRVFEDLRERGCADGVSFATLIYLLIKHGRKHGI 409

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BLAST of Carg24196 vs. NCBI nr
Match: KAG6586106.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 651.4 bits (1679), Expect = 5.3e-183
Identity = 396/741 (53.44%), Postives = 397/741 (53.58%), Query Frame = 0 

Query: 1   MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQKQIIRDLK 60
           MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQKQIIRDLK
Sbjct: 1   MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQKQIIRDLK 60

Query: 61  VSPRFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSP 120
           VSPRFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSP
Sbjct: 61  VSPRFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSP 120

Query: 121 KEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMA 180
           KEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMA
Sbjct: 121 KEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMA 180

Query: 181 ENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFD 240
           ENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFD
Sbjct: 181 ENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFD 240

Query: 241 SADKFYKDW----------------------------------------TGMKIPNRQAS 300
           SADKFYKDW                                        TGMKIPN+Q S
Sbjct: 241 SADKFYKDWCKGVVELNDFDLNSRVDDLGLNSTTEPITLKHFLLTELFRTGMKIPNQQVS 300

Query: 301 PEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKS------------------ 360
           PEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKS                  
Sbjct: 301 PEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKSGIPMDTITFNTMIFTCGS 360

Query: 361 ------------------------------------------------------------ 400
                                                                       
Sbjct: 361 HGHLAEAETLLSKMEERGLSPDTKTYNIFLSLYADEGNIDGALKCYRRIREVGLFPDVVT 420

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BLAST of Carg24196 vs. NCBI nr
Match: XP_022937788.1 (pentatricopeptide repeat-containing protein At1g73710 [Cucurbita moschata])

HSP 1 Score: 643.3 bits (1658), Expect = 1.4e-180
Identity = 392/741 (52.90%), Postives = 395/741 (53.31%), Query Frame = 0 

Query: 1   MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQKQIIRDLK 60
           MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQKQIIRDLK
Sbjct: 1   MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQKQIIRDLK 60

Query: 61  VSPRFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSP 120
           VS  FKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSP
Sbjct: 61  VSSGFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSP 120

Query: 121 KEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMA 180
           KEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMA
Sbjct: 121 KEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMA 180

Query: 181 ENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFD 240
           ENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFD
Sbjct: 181 ENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFD 240

Query: 241 SADKFYKDW----------------------------------------TGMKIPNRQAS 300
           SADKFYKDW                                        TGMKIPNR+ S
Sbjct: 241 SADKFYKDWCRGVVELNDFDLNSRVDDLGLNSTTEPITLKHFLLTELFRTGMKIPNRKTS 300

Query: 301 PEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKS------------------ 360
           PEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKS                  
Sbjct: 301 PEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKSGIPMDTITFNTMIFTCGS 360

Query: 361 ------------------------------------------------------------ 400
                                                                       
Sbjct: 361 HGHLAEAETLLSKMEERGLSPDTKTYNIFLSLYADEGNIDGALKCYRRIREVGLFPDVVT 420

[Close]
BLAST of Carg24196 vs. NCBI nr
Match: XP_023538127.1 (pentatricopeptide repeat-containing protein At1g73710 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 637.1 bits (1642), Expect = 1.0e-178
Identity = 389/741 (52.50%), Postives = 393/741 (53.04%), Query Frame = 0 

Query: 1   MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQKQIIRDLK 60
           MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQK IIRDLK
Sbjct: 1   MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQKPIIRDLK 60

Query: 61  VSPRFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSP 120
           VS  FKLQC SKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSP
Sbjct: 61  VSSGFKLQCLSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSP 120

Query: 121 KEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMA 180
           KEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMA
Sbjct: 121 KEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMA 180

Query: 181 ENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFD 240
           ENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFD
Sbjct: 181 ENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFD 240

Query: 241 SADKFYKDW----------------------------------------TGMKIPNRQAS 300
           SADKFYKDW                                        TGMKIPNR+AS
Sbjct: 241 SADKFYKDWCRGMVELNDFDLNSRVDDLGLNSTTEPITLKHFLLTELFRTGMKIPNRKAS 300

Query: 301 PEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKS------------------ 360
           PEVDNC RKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKS                  
Sbjct: 301 PEVDNCTRKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKSGIPMDTITFNTMIFTCGS 360

Query: 361 ------------------------------------------------------------ 400
                                                                       
Sbjct: 361 HGHLAEAETLLSKMEERGLSPDTKTYNIFLSLYADEGNIDGALKCYRRIREVGLFPDVVT 420

[Close]
BLAST of Carg24196 vs. NCBI nr
Match: XP_022965505.1 (pentatricopeptide repeat-containing protein At1g73710 [Cucurbita maxima])

HSP 1 Score: 624.0 bits (1608), Expect = 9.1e-175
Identity = 385/745 (51.68%), Postives = 393/745 (52.75%), Query Frame = 0 

Query: 1   MMLQVGSCRELGQDSFTASLIQTNF----TAKGHHYLFLNTPLASRRLSLGNLNSQKQII 60
           MMLQVGSCRELGQDSFTASLIQTNF    TAKGH YLFLNTPLASR+LSLGNLNSQK  I
Sbjct: 1   MMLQVGSCRELGQDSFTASLIQTNFFSCSTAKGHCYLFLNTPLASRKLSLGNLNSQKPNI 60

Query: 61  RDLKVSPRFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQ 120
           RDLKVSP FKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQ
Sbjct: 61  RDLKVSPGFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQ 120

Query: 121 NLSPKEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCW 180
           NLSPKEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCW
Sbjct: 121 NLSPKEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCW 180

Query: 181 NEMAENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDA 240
           NEMAENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVR IFPDEVTMNTVVRVLKDA
Sbjct: 181 NEMAENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRAIFPDEVTMNTVVRVLKDA 240

Query: 241 GEFDSADKFYKDW----------------------------------------TGMKIPN 300
           GEFDSADKFYKDW                                        TGMKIPN
Sbjct: 241 GEFDSADKFYKDWCRGLVELNDFDLNSGVDDLGLNSTTEPITLKHFLLTELFRTGMKIPN 300

Query: 301 RQASPEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKS-------------- 360
           R+ASP+VDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKS              
Sbjct: 301 RKASPDVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKSGIPMDTITFNTMIF 360

Query: 361 ------------------------------------------------------------ 400
                                                                       
Sbjct: 361 TCGSHGHLAEAETLLSKMEERGLSPDTKTYNIFLSLYADEGNTDGALKCYQRIREVGLFP 420

[Close]
BLAST of Carg24196 vs. ExPASy Swiss-Prot
Match: Q9C9U0 (Pentatricopeptide repeat-containing protein At1g73710 OS=Arabidopsis thaliana OX=3702 GN=At1g73710 PE=2 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 1.6e-89
Identity = 195/417 (46.76%), Postives = 253/417 (60.67%), Query Frame = 0 

Query: 30  HHYLFLNTPLASRRLSLG-NLNSQKQIIRDLKVSPRFKLQC---FSKTVFTP-SKRLSTN 89
           HH+L L++      LSL  N +S        +VS + +L C    S +V  P   + + +
Sbjct: 25  HHHLALSSKARVFPLSLPCNFSS--------RVSFKLQLHCAASSSSSVSPPRCSKPNPS 84

Query: 90  GKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSPKEQTVILKEQRQWERVLQVFQWFK 149
            +K+ YGGV+PSILRSL SS+DI + L SLC NLSPKEQTV+LKEQ +WERVL+VF++F+
Sbjct: 85  SRKRKYGGVIPSILRSLDSSTDIETTLASLCLNLSPKEQTVLLKEQTRWERVLRVFRFFQ 144

Query: 150 SQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMAENGIIPSNNTYGMLVDVYGKAGLV 209
           S + YVPNVIHYNIVLRALGRA KWDELRLCW EMA NG++P+NNTYGMLVDVYGKAGLV
Sbjct: 145 SHQSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGLV 204

Query: 210 KEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFDSADKFYKDWTGMKI---------- 269
           KEALLWIKHM  R  FPDEVTM TVVRV K++GEFD AD+F+K W   K+          
Sbjct: 205 KEALLWIKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFFKGWCAGKVDLDLDSIDDF 264

Query: 270 -PNRQASPEV-----------------------------DNCARKPRLTSTFNTLIDLYG 329
             N  A   V                             D+  RKPRLTSTFNTLIDLYG
Sbjct: 265 PKNGSAQSPVNLKQFLSMELFKVGARNPIEKSLHFASGSDSSPRKPRLTSTFNTLIDLYG 324

Query: 330 KAGRLKDAANVFAEMLKSERALKYFHLMKGAGIAENQIVLTSLIKAFSKVGSVEGAKAMY 389
           KAGRL DAAN+F+EMLKS             G+  + +   ++I      G +  A+++ 
Sbjct: 325 KAGRLNDAANLFSEMLKS-------------GVPIDTVTFNTMIHTCGTHGHLSEAESLL 384

Query: 390 NRMKNMENGVDTIASNTMINLYTDLGMVSEAKRVFEDLRERGC-ADGVSFATLIYLL 401
            +M+      DT   N +++L+ D G +  A   +  +R+ G   D V+   ++++L
Sbjct: 385 KKMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHIL 420

[Close]
BLAST of Carg24196 vs. ExPASy Swiss-Prot
Match: Q9LS88 (Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana OX=3702 GN=At3g23020 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-54
Identity = 121/320 (37.81%), Postives = 181/320 (56.56%), Query Frame = 0 

Query: 86  KKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSPKEQTVILKEQRQWERVLQVFQWFKS 145
           K+ SYGG +P+IL +L S  D+   L+   + LS KE+T+ILKEQ  WER +++F+WFKS
Sbjct: 120 KRLSYGGCIPAILEALDSIEDVEDALSPWAERLSNKERTIILKEQIHWERAVEIFEWFKS 179

Query: 146 QKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMAENGIIPSNNTYGMLVDVYGKAGLVK 205
           +  Y  NVIHYNI+LR LG+A KW  ++  W+EM   GI P N+TYG L+DVY K GL  
Sbjct: 180 KGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLIDVYSKGGLKV 239

Query: 206 EALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFDSADKFYKDWTGMKIPNRQASPEVDN 265
            AL W+  M   G+ PDEVT   V+++ K A EF  A++F+K W+       +A   V  
Sbjct: 240 HALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWS---CDENKADSHV-- 299

Query: 266 CARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKSERALKYFHLMKGAGIAENQIVLT 325
           C      + T+NT+ID YGK+G++K+A+  F  ML+              GI    +   
Sbjct: 300 CLS----SYTYNTMIDTYGKSGQIKEASETFKRMLEE-------------GIVPTTVTFN 359

Query: 326 SLIKAFSKVGSVEGAKAMYNRMKNMENGVDTIASNTMINLYTDLGMVSEAKRVFEDLRER 385
           ++I  +   G +    ++   MK +    DT   N +I+L+T    +  A   F+++++ 
Sbjct: 360 TMIHIYGNNGQLGEVTSLMKTMK-LHCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDD 416

Query: 386 GC-ADGVSFATLIYLL-IKH 404
           G   D VS+ TL+Y   I+H
Sbjct: 420 GLKPDPVSYRTLLYAFSIRH 416

[Close]
BLAST of Carg24196 vs. ExPASy Swiss-Prot
Match: Q9LS25 (Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g46580 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-24
Identity = 74/305 (24.26%), Postives = 142/305 (46.56%), Query Frame = 0 

Query: 105 SDIGSILNSLCQNLSPKEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALG 164
           S+  S+L+ +    +     ++L   R+W++    F W KS+  +    I YN+ +++L 
Sbjct: 138 SEFLSLLDEIPHPPNRDNALLVLNSLREWQKTHTFFNWVKSKSLFPMETIFYNVTMKSLR 197

Query: 165 RAQKWDELRLCWNEMAENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEV 224
             +++  +     EM ++G+   N TY  ++    +  L  +A+ W + M   G+ PDEV
Sbjct: 198 FGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEV 257

Query: 225 TMNTVVRVLKDAGEFDSADKFYK-------------------------DWTGMKIPNRQA 284
           T + ++ V   +G+ +     Y+                         D+ G+    R  
Sbjct: 258 TYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGI----RYV 317

Query: 285 SPEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKSERALKYFHLMKGAGIAE 344
             E+ +   KP +   +NTL++  G+AG+   A ++F EML+             AG+  
Sbjct: 318 LQEMKSMDVKPNVV-VYNTLLEAMGRAGKPGLARSLFNEMLE-------------AGLTP 377

Query: 345 NQIVLTSLIKAFSKVGSVEGAKAMYNRMKNMENGVDTIASNTMINLYTDLGMVSEAKRVF 385
           N+  LT+L+K + K      A  ++  MK  +  +D I  NT++N+  D+G+  EA+R+F
Sbjct: 378 NEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLF 424

[Close]
BLAST of Carg24196 vs. ExPASy Swiss-Prot
Match: Q9FLD8 (Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g39980 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 9.9e-23
Identity = 68/283 (24.03%), Postives = 132/283 (46.64%), Query Frame = 0 

Query: 116 QNLSPKEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLC 175
           + LS +    +L  +  W+R L +  W   +  Y P+V  YN+VLR + RA+++D     
Sbjct: 118 RQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGL 177

Query: 176 WNEMAENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKD 235
           ++EM +  + P   TY  L+  +GK G+   AL W++ M+   +  D V  + ++ + + 
Sbjct: 178 FDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRR 237

Query: 236 AGEFDSADKFYKDWTGMKIPNRQASPEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANV 295
             ++  A   +      ++     +P++            +N++I++YGKA   ++A  +
Sbjct: 238 LCDYSKAISIFS-----RLKRSGITPDL----------VAYNSMINVYGKAKLFREARLL 297

Query: 296 FAEMLKSERALKYFHLMKGAGIAENQIVLTSLIKAFSKVGSVEGAKAMYNRMKNMENGVD 355
             E             M  AG+  N +  ++L+  + +      A +++  MK +   +D
Sbjct: 298 IKE-------------MNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALD 357

Query: 356 TIASNTMINLYTDLGMVSEAKRVFEDLRERGCADG-VSFATLI 398
               N MI++Y  L MV EA R+F  LR+       VS+ T++
Sbjct: 358 LTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTIL 372

[Close]
BLAST of Carg24196 vs. ExPASy Swiss-Prot
Match: O82178 (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX=3702 GN=At2g35130 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.2e-21
Identity = 89/406 (21.92%), Postives = 182/406 (44.83%), Query Frame = 0 

Query: 33  LFLNTPLASRRLSLGNLNSQKQIIRDLK-----VSPRFKLQCFSKTVFTPSKRLSTNGKK 92
           LF+++    R L  G  N     ++  K     +  R KL+ F++   +  +  S  G+ 
Sbjct: 11  LFIDSSGFQRYLGFGVTNLNGATVKSYKQEGFVIDERGKLKRFNRKKLSRKRCGSLRGRG 70

Query: 93  KSYG-----GVLP-------SILRSLKSSSD---IGSILNSLCQNLSPKEQ----TVILK 152
             YG     G+ P        IL  ++  +D   +  +L +L    +  +     +V L+
Sbjct: 71  WKYGSGFVDGIFPVLSPIAQKILSFIQKETDPDKVADVLGALPSTHASWDDLINVSVQLR 130

Query: 153 EQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMAENGIIPSN 212
             ++W+ ++ V +W   +  + P+VI +N+++ A G+  ++ E    + ++ E+  +P+ 
Sbjct: 131 LNKKWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTE 190

Query: 213 NTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNT----VVRVLKDAGEFDSADK 272
           +TY +L+  Y  AGL++ A + +  M+   + P  + +      +  ++K  G  + A  
Sbjct: 191 DTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAID 250

Query: 273 FYKDWTGMKIPNRQASPEVDNCARKPRLTSTFNTLIDLYGKAGR---------------- 332
            ++              + D C  KP  T T+N +I+LYGKA +                
Sbjct: 251 VFQ------------RMKRDRC--KP-TTETYNLMINLYGKASKSYMSWKLYCEMRSHQC 310

Query: 333 ------LKDAANVFAEMLKSERALKYFHLMKGAGIAENQIVLTSLIKAFSKVGSVEGAKA 389
                      N FA     E+A + F  ++  G+  +  V  +L++++S+ G   GA  
Sbjct: 311 KPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAE 370

[Close]
BLAST of Carg24196 vs. ExPASy TrEMBL
Match: A0A6J1FGZ9 (pentatricopeptide repeat-containing protein At1g73710 OS=Cucurbita moschata OX=3662 GN=LOC111444079 PE=3 SV=1)

HSP 1 Score: 643.3 bits (1658), Expect = 7.0e-181
Identity = 392/741 (52.90%), Postives = 395/741 (53.31%), Query Frame = 0 

Query: 1   MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQKQIIRDLK 60
           MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQKQIIRDLK
Sbjct: 1   MMLQVGSCRELGQDSFTASLIQTNFTAKGHHYLFLNTPLASRRLSLGNLNSQKQIIRDLK 60

Query: 61  VSPRFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSP 120
           VS  FKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSP
Sbjct: 61  VSSGFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSP 120

Query: 121 KEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMA 180
           KEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMA
Sbjct: 121 KEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMA 180

Query: 181 ENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFD 240
           ENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFD
Sbjct: 181 ENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFD 240

Query: 241 SADKFYKDW----------------------------------------TGMKIPNRQAS 300
           SADKFYKDW                                        TGMKIPNR+ S
Sbjct: 241 SADKFYKDWCRGVVELNDFDLNSRVDDLGLNSTTEPITLKHFLLTELFRTGMKIPNRKTS 300

Query: 301 PEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKS------------------ 360
           PEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKS                  
Sbjct: 301 PEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKSGIPMDTITFNTMIFTCGS 360

Query: 361 ------------------------------------------------------------ 400
                                                                       
Sbjct: 361 HGHLAEAETLLSKMEERGLSPDTKTYNIFLSLYADEGNIDGALKCYRRIREVGLFPDVVT 420

[Close]
BLAST of Carg24196 vs. ExPASy TrEMBL
Match: A0A6J1HNW8 (pentatricopeptide repeat-containing protein At1g73710 OS=Cucurbita maxima OX=3661 GN=LOC111465390 PE=3 SV=1)

HSP 1 Score: 624.0 bits (1608), Expect = 4.4e-175
Identity = 385/745 (51.68%), Postives = 393/745 (52.75%), Query Frame = 0 

Query: 1   MMLQVGSCRELGQDSFTASLIQTNF----TAKGHHYLFLNTPLASRRLSLGNLNSQKQII 60
           MMLQVGSCRELGQDSFTASLIQTNF    TAKGH YLFLNTPLASR+LSLGNLNSQK  I
Sbjct: 1   MMLQVGSCRELGQDSFTASLIQTNFFSCSTAKGHCYLFLNTPLASRKLSLGNLNSQKPNI 60

Query: 61  RDLKVSPRFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQ 120
           RDLKVSP FKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQ
Sbjct: 61  RDLKVSPGFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILNSLCQ 120

Query: 121 NLSPKEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCW 180
           NLSPKEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCW
Sbjct: 121 NLSPKEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCW 180

Query: 181 NEMAENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKDA 240
           NEMAENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVR IFPDEVTMNTVVRVLKDA
Sbjct: 181 NEMAENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRAIFPDEVTMNTVVRVLKDA 240

Query: 241 GEFDSADKFYKDW----------------------------------------TGMKIPN 300
           GEFDSADKFYKDW                                        TGMKIPN
Sbjct: 241 GEFDSADKFYKDWCRGLVELNDFDLNSGVDDLGLNSTTEPITLKHFLLTELFRTGMKIPN 300

Query: 301 RQASPEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKS-------------- 360
           R+ASP+VDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKS              
Sbjct: 301 RKASPDVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKSGIPMDTITFNTMIF 360

Query: 361 ------------------------------------------------------------ 400
                                                                       
Sbjct: 361 TCGSHGHLAEAETLLSKMEERGLSPDTKTYNIFLSLYADEGNTDGALKCYQRIREVGLFP 420

[Close]
BLAST of Carg24196 vs. ExPASy TrEMBL
Match: A0A5D3BQP5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00310 PE=3 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 1.2e-145
Identity = 330/749 (44.06%), Postives = 361/749 (48.20%), Query Frame = 0 

Query: 1   MMLQVGSCRELGQDSFTASLIQTN--------FTAKGHHYLFLNTPLASRRLSLGNLNSQ 60
           MML VG+CRE+GQD+FTA LIQT           AKG H LFL T L SR L+  NLNSQ
Sbjct: 1   MMLHVGNCREIGQDNFTARLIQTKTSSSFMECVNAKGQHCLFLYTSLTSRELNFVNLNSQ 60

Query: 61  KQIIRDLKVSPRFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILN 120
           K + RDLKVS  FKLQC S+T+  PS+RLSTNGKKKSYGG+LPSILRSLKSS+DIGSIL+
Sbjct: 61  KHVNRDLKVSLGFKLQCHSRTLSMPSQRLSTNGKKKSYGGILPSILRSLKSSNDIGSILS 120

Query: 121 SLCQNLSPKEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDEL 180
           S CQNLSPKEQTVILKEQ QWERV+QVFQWFKSQKDY PNVIHYNIVLR LGRAQKWDEL
Sbjct: 121 SSCQNLSPKEQTVILKEQSQWERVIQVFQWFKSQKDYAPNVIHYNIVLRTLGRAQKWDEL 180

Query: 181 RLCWNEMAENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRV 240
           RLCWNEMAENG++P+NNTYG+L+DVYGK GLVKEALLWIKHM+VRGIFPDEVTMNTVVRV
Sbjct: 181 RLCWNEMAENGVVPTNNTYGVLIDVYGKVGLVKEALLWIKHMRVRGIFPDEVTMNTVVRV 240

Query: 241 LKDAGEFDSADKFYKDW----------------------------------------TGM 300
           LKDAGEFDSADKFYKDW                                         G 
Sbjct: 241 LKDAGEFDSADKFYKDWCRGLVELNDFDLNSGVEDFGVNSAIEPITLKHFLLTELFRIGT 300

Query: 301 KIPNRQASPEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEML------------ 360
           +IPNR+ SPEVDNC RKPRLTST+NTLIDLYGKAGRLKDAANVFAEML            
Sbjct: 301 RIPNRKVSPEVDNCVRKPRLTSTYNTLIDLYGKAGRLKDAANVFAEMLTTGISMDTITFN 360

Query: 361 ------------------------------------------------------------ 400
                                                                       
Sbjct: 361 TMIYTCGSHGHLAEAETLLLKMEERGLSPDTKTYNIFLSLYANDGNIDGALKCYRRIREV 420

[Close]
BLAST of Carg24196 vs. ExPASy TrEMBL
Match: A0A1S3CAP2 (pentatricopeptide repeat-containing protein At1g73710 OS=Cucumis melo OX=3656 GN=LOC103498707 PE=3 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 1.2e-145
Identity = 330/749 (44.06%), Postives = 361/749 (48.20%), Query Frame = 0 

Query: 1   MMLQVGSCRELGQDSFTASLIQTN--------FTAKGHHYLFLNTPLASRRLSLGNLNSQ 60
           MML VG+CRE+GQD+FTA LIQT           AKG H LFL T L SR L+  NLNSQ
Sbjct: 1   MMLHVGNCREIGQDNFTARLIQTKTSSSFMECVNAKGQHCLFLYTSLTSRELNFVNLNSQ 60

Query: 61  KQIIRDLKVSPRFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDIGSILN 120
           K + RDLKVS  FKLQC S+T+  PS+RLSTNGKKKSYGG+LPSILRSLKSS+DIGSIL+
Sbjct: 61  KHVNRDLKVSLGFKLQCHSRTLSMPSQRLSTNGKKKSYGGILPSILRSLKSSNDIGSILS 120

Query: 121 SLCQNLSPKEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDEL 180
           S CQNLSPKEQTVILKEQ QWERV+QVFQWFKSQKDY PNVIHYNIVLR LGRAQKWDEL
Sbjct: 121 SSCQNLSPKEQTVILKEQSQWERVIQVFQWFKSQKDYAPNVIHYNIVLRTLGRAQKWDEL 180

Query: 181 RLCWNEMAENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRV 240
           RLCWNEMAENG++P+NNTYG+L+DVYGK GLVKEALLWIKHM+VRGIFPDEVTMNTVVRV
Sbjct: 181 RLCWNEMAENGVVPTNNTYGVLIDVYGKVGLVKEALLWIKHMRVRGIFPDEVTMNTVVRV 240

Query: 241 LKDAGEFDSADKFYKDW----------------------------------------TGM 300
           LKDAGEFDSADKFYKDW                                         G 
Sbjct: 241 LKDAGEFDSADKFYKDWCRGLVELNDFDLNSGVEDFGVNSAIEPITLKHFLLTELFRIGT 300

Query: 301 KIPNRQASPEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEML------------ 360
           +IPNR+ SPEVDNC RKPRLTST+NTLIDLYGKAGRLKDAANVFAEML            
Sbjct: 301 RIPNRKVSPEVDNCVRKPRLTSTYNTLIDLYGKAGRLKDAANVFAEMLTTGISMDTITFN 360

Query: 361 ------------------------------------------------------------ 400
                                                                       
Sbjct: 361 TMIYTCGSHGHLAEAETLLLKMEERGLSPDTKTYNIFLSLYANDGNIDGALKCYRRIREV 420

[Close]
BLAST of Carg24196 vs. ExPASy TrEMBL
Match: A0A6J1D965 (pentatricopeptide repeat-containing protein At1g73710 OS=Momordica charantia OX=3673 GN=LOC111018065 PE=3 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 3.0e-139
Identity = 272/454 (59.91%), Postives = 316/454 (69.60%), Query Frame = 0 

Query: 1   MMLQVGSCRELGQDSFTASLIQTNFT-------------AKGHHYLFLNTPLASRRLSLG 60
           MMLQVGSCRELGQD FTASLIQ++F+             AKG H LFL   LASR L+  
Sbjct: 1   MMLQVGSCRELGQDCFTASLIQSSFSAPVMEFNLRNCSAAKGQHCLFLYPSLASRELTFA 60

Query: 61  NLNSQKQIIRDLKVSPRFKLQCFSKTVFTPSKRLSTNGKKKSYGGVLPSILRSLKSSSDI 120
           + NSQKQI R  KVSP FKLQC S+T+ TPSK LS NGKKKSYGG+LP ILRSL+SSSD+
Sbjct: 61  DFNSQKQINRGPKVSPGFKLQCRSRTLSTPSKGLSANGKKKSYGGILPPILRSLRSSSDV 120

Query: 121 GSILNSLCQNLSPKEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQ 180
           G+IL+SLCQNLSPKEQTVILKEQ QWERV+QVF+WFKSQKDYVPNVIHYNIVLRALGRA+
Sbjct: 121 GNILSSLCQNLSPKEQTVILKEQGQWERVVQVFKWFKSQKDYVPNVIHYNIVLRALGRAK 180

Query: 181 KWDELRLCWNEMAENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMN 240
           KWDELRLCWNEMA+NG++P+NNTYGMLVDVYGKAGLVKEALLWIKHM+VRGIFPDEVTMN
Sbjct: 181 KWDELRLCWNEMAQNGVVPTNNTYGMLVDVYGKAGLVKEALLWIKHMRVRGIFPDEVTMN 240

Query: 241 TVVRVLKDAGEFDSADKFYKDW-------------------------------------- 300
           TVVRVLKDAGEFD+ADKFYKDW                                      
Sbjct: 241 TVVRVLKDAGEFDAADKFYKDWCRGLVGLNDFDLNSVVDDFGLNSATESITLKHFLLTEL 300

Query: 301 --TGMKIPNRQASPEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKSERALK 360
             TGM+IP+R+ S EV NC RKPRLTST+NTLIDLYGKAGRLKDAANVFAEML +     
Sbjct: 301 FRTGMRIPSRKESSEVHNCIRKPRLTSTYNTLIDLYGKAGRLKDAANVFAEMLTT----- 360

Query: 361 YFHLMKGAGIAENQIVLTSLIKAFSKVGSVEGAKAMYNRMKNMENGVDTIASNTMINLYT 401
                   GI  + I   ++I      G +  A+ +  +M+      DT   N  ++LY 
Sbjct: 361 --------GIPMDTITFNTMIFTCGSHGHLTEAETLLAKMEERGLSPDTKTYNIFLSLYA 420

[Close]
BLAST of Carg24196 vs. TAIR 10
Match: AT1G73710.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 331.3 bits (848), Expect = 1.1e-90
Identity = 195/417 (46.76%), Postives = 253/417 (60.67%), Query Frame = 0 

Query: 30  HHYLFLNTPLASRRLSLG-NLNSQKQIIRDLKVSPRFKLQC---FSKTVFTP-SKRLSTN 89
           HH+L L++      LSL  N +S        +VS + +L C    S +V  P   + + +
Sbjct: 25  HHHLALSSKARVFPLSLPCNFSS--------RVSFKLQLHCAASSSSSVSPPRCSKPNPS 84

Query: 90  GKKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSPKEQTVILKEQRQWERVLQVFQWFK 149
            +K+ YGGV+PSILRSL SS+DI + L SLC NLSPKEQTV+LKEQ +WERVL+VF++F+
Sbjct: 85  SRKRKYGGVIPSILRSLDSSTDIETTLASLCLNLSPKEQTVLLKEQTRWERVLRVFRFFQ 144

Query: 150 SQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMAENGIIPSNNTYGMLVDVYGKAGLV 209
           S + YVPNVIHYNIVLRALGRA KWDELRLCW EMA NG++P+NNTYGMLVDVYGKAGLV
Sbjct: 145 SHQSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGLV 204

Query: 210 KEALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFDSADKFYKDWTGMKI---------- 269
           KEALLWIKHM  R  FPDEVTM TVVRV K++GEFD AD+F+K W   K+          
Sbjct: 205 KEALLWIKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFFKGWCAGKVDLDLDSIDDF 264

Query: 270 -PNRQASPEV-----------------------------DNCARKPRLTSTFNTLIDLYG 329
             N  A   V                             D+  RKPRLTSTFNTLIDLYG
Sbjct: 265 PKNGSAQSPVNLKQFLSMELFKVGARNPIEKSLHFASGSDSSPRKPRLTSTFNTLIDLYG 324

Query: 330 KAGRLKDAANVFAEMLKSERALKYFHLMKGAGIAENQIVLTSLIKAFSKVGSVEGAKAMY 389
           KAGRL DAAN+F+EMLKS             G+  + +   ++I      G +  A+++ 
Sbjct: 325 KAGRLNDAANLFSEMLKS-------------GVPIDTVTFNTMIHTCGTHGHLSEAESLL 384

Query: 390 NRMKNMENGVDTIASNTMINLYTDLGMVSEAKRVFEDLRERGC-ADGVSFATLIYLL 401
            +M+      DT   N +++L+ D G +  A   +  +R+ G   D V+   ++++L
Sbjct: 385 KKMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHIL 420

[Close]
BLAST of Carg24196 vs. TAIR 10
Match: AT3G23020.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 214.5 bits (545), Expect = 1.5e-55
Identity = 121/320 (37.81%), Postives = 181/320 (56.56%), Query Frame = 0 

Query: 86  KKKSYGGVLPSILRSLKSSSDIGSILNSLCQNLSPKEQTVILKEQRQWERVLQVFQWFKS 145
           K+ SYGG +P+IL +L S  D+   L+   + LS KE+T+ILKEQ  WER +++F+WFKS
Sbjct: 120 KRLSYGGCIPAILEALDSIEDVEDALSPWAERLSNKERTIILKEQIHWERAVEIFEWFKS 179

Query: 146 QKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMAENGIIPSNNTYGMLVDVYGKAGLVK 205
           +  Y  NVIHYNI+LR LG+A KW  ++  W+EM   GI P N+TYG L+DVY K GL  
Sbjct: 180 KGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLIDVYSKGGLKV 239

Query: 206 EALLWIKHMKVRGIFPDEVTMNTVVRVLKDAGEFDSADKFYKDWTGMKIPNRQASPEVDN 265
            AL W+  M   G+ PDEVT   V+++ K A EF  A++F+K W+       +A   V  
Sbjct: 240 HALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWS---CDENKADSHV-- 299

Query: 266 CARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKSERALKYFHLMKGAGIAENQIVLT 325
           C      + T+NT+ID YGK+G++K+A+  F  ML+              GI    +   
Sbjct: 300 CLS----SYTYNTMIDTYGKSGQIKEASETFKRMLEE-------------GIVPTTVTFN 359

Query: 326 SLIKAFSKVGSVEGAKAMYNRMKNMENGVDTIASNTMINLYTDLGMVSEAKRVFEDLRER 385
           ++I  +   G +    ++   MK +    DT   N +I+L+T    +  A   F+++++ 
Sbjct: 360 TMIHIYGNNGQLGEVTSLMKTMK-LHCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDD 416

Query: 386 GC-ADGVSFATLIYLL-IKH 404
           G   D VS+ TL+Y   I+H
Sbjct: 420 GLKPDPVSYRTLLYAFSIRH 416

[Close]
BLAST of Carg24196 vs. TAIR 10
Match: AT5G46580.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 115.9 bits (289), Expect = 7.5e-26
Identity = 74/305 (24.26%), Postives = 142/305 (46.56%), Query Frame = 0 

Query: 105 SDIGSILNSLCQNLSPKEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALG 164
           S+  S+L+ +    +     ++L   R+W++    F W KS+  +    I YN+ +++L 
Sbjct: 138 SEFLSLLDEIPHPPNRDNALLVLNSLREWQKTHTFFNWVKSKSLFPMETIFYNVTMKSLR 197

Query: 165 RAQKWDELRLCWNEMAENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEV 224
             +++  +     EM ++G+   N TY  ++    +  L  +A+ W + M   G+ PDEV
Sbjct: 198 FGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEV 257

Query: 225 TMNTVVRVLKDAGEFDSADKFYK-------------------------DWTGMKIPNRQA 284
           T + ++ V   +G+ +     Y+                         D+ G+    R  
Sbjct: 258 TYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGI----RYV 317

Query: 285 SPEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANVFAEMLKSERALKYFHLMKGAGIAE 344
             E+ +   KP +   +NTL++  G+AG+   A ++F EML+             AG+  
Sbjct: 318 LQEMKSMDVKPNVV-VYNTLLEAMGRAGKPGLARSLFNEMLE-------------AGLTP 377

Query: 345 NQIVLTSLIKAFSKVGSVEGAKAMYNRMKNMENGVDTIASNTMINLYTDLGMVSEAKRVF 385
           N+  LT+L+K + K      A  ++  MK  +  +D I  NT++N+  D+G+  EA+R+F
Sbjct: 378 NEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLF 424

[Close]
BLAST of Carg24196 vs. TAIR 10
Match: AT5G39980.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 109.4 bits (272), Expect = 7.0e-24
Identity = 68/283 (24.03%), Postives = 132/283 (46.64%), Query Frame = 0 

Query: 116 QNLSPKEQTVILKEQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLC 175
           + LS +    +L  +  W+R L +  W   +  Y P+V  YN+VLR + RA+++D     
Sbjct: 118 RQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGL 177

Query: 176 WNEMAENGIIPSNNTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNTVVRVLKD 235
           ++EM +  + P   TY  L+  +GK G+   AL W++ M+   +  D V  + ++ + + 
Sbjct: 178 FDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRR 237

Query: 236 AGEFDSADKFYKDWTGMKIPNRQASPEVDNCARKPRLTSTFNTLIDLYGKAGRLKDAANV 295
             ++  A   +      ++     +P++            +N++I++YGKA   ++A  +
Sbjct: 238 LCDYSKAISIFS-----RLKRSGITPDL----------VAYNSMINVYGKAKLFREARLL 297

Query: 296 FAEMLKSERALKYFHLMKGAGIAENQIVLTSLIKAFSKVGSVEGAKAMYNRMKNMENGVD 355
             E             M  AG+  N +  ++L+  + +      A +++  MK +   +D
Sbjct: 298 IKE-------------MNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALD 357

Query: 356 TIASNTMINLYTDLGMVSEAKRVFEDLRERGCADG-VSFATLI 398
               N MI++Y  L MV EA R+F  LR+       VS+ T++
Sbjct: 358 LTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTIL 372

[Close]
BLAST of Carg24196 vs. TAIR 10
Match: AT2G35130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 6.6e-22
Identity = 89/406 (21.92%), Postives = 182/406 (44.83%), Query Frame = 0 

Query: 33  LFLNTPLASRRLSLGNLNSQKQIIRDLK-----VSPRFKLQCFSKTVFTPSKRLSTNGKK 92
           LF+++    R L  G  N     ++  K     +  R KL+ F++   +  +  S  G+ 
Sbjct: 11  LFIDSSGFQRYLGFGVTNLNGATVKSYKQEGFVIDERGKLKRFNRKKLSRKRCGSLRGRG 70

Query: 93  KSYG-----GVLP-------SILRSLKSSSD---IGSILNSLCQNLSPKEQ----TVILK 152
             YG     G+ P        IL  ++  +D   +  +L +L    +  +     +V L+
Sbjct: 71  WKYGSGFVDGIFPVLSPIAQKILSFIQKETDPDKVADVLGALPSTHASWDDLINVSVQLR 130

Query: 153 EQRQWERVLQVFQWFKSQKDYVPNVIHYNIVLRALGRAQKWDELRLCWNEMAENGIIPSN 212
             ++W+ ++ V +W   +  + P+VI +N+++ A G+  ++ E    + ++ E+  +P+ 
Sbjct: 131 LNKKWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTE 190

Query: 213 NTYGMLVDVYGKAGLVKEALLWIKHMKVRGIFPDEVTMNT----VVRVLKDAGEFDSADK 272
           +TY +L+  Y  AGL++ A + +  M+   + P  + +      +  ++K  G  + A  
Sbjct: 191 DTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAID 250

Query: 273 FYKDWTGMKIPNRQASPEVDNCARKPRLTSTFNTLIDLYGKAGR---------------- 332
            ++              + D C  KP  T T+N +I+LYGKA +                
Sbjct: 251 VFQ------------RMKRDRC--KP-TTETYNLMINLYGKASKSYMSWKLYCEMRSHQC 310

Query: 333 ------LKDAANVFAEMLKSERALKYFHLMKGAGIAENQIVLTSLIKAFSKVGSVEGAKA 389
                      N FA     E+A + F  ++  G+  +  V  +L++++S+ G   GA  
Sbjct: 311 KPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAE 370

The following BLAST results are available for this feature:
BLAST of Carg24196 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020930.12.5e-233100.00Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG6586106.15.3e-18353.44Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022937788.11.4e-18052.90pentatricopeptide repeat-containing protein At1g73710 [Cucurbita moschata][more]
XP_023538127.11.0e-17852.50pentatricopeptide repeat-containing protein At1g73710 [Cucurbita pepo subsp. pep... [more]
XP_022965505.19.1e-17551.68pentatricopeptide repeat-containing protein At1g73710 [Cucurbita maxima][more]
BLAST of Carg24196 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9C9U01.6e-8946.76Pentatricopeptide repeat-containing protein At1g73710 OS=Arabidopsis thaliana OX... [more]
Q9LS882.2e-5437.81Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana OX... [more]
Q9LS251.1e-2424.26Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidop... [more]
Q9FLD89.9e-2324.03Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidop... [more]
O821789.2e-2121.92Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg24196 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FGZ97.0e-18152.90pentatricopeptide repeat-containing protein At1g73710 OS=Cucurbita moschata OX=3... [more]
A0A6J1HNW84.4e-17551.68pentatricopeptide repeat-containing protein At1g73710 OS=Cucurbita maxima OX=366... [more]
A0A5D3BQP51.2e-14544.06Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CAP21.2e-14544.06pentatricopeptide repeat-containing protein At1g73710 OS=Cucumis melo OX=3656 GN... [more]
A0A6J1D9653.0e-13959.91pentatricopeptide repeat-containing protein At1g73710 OS=Momordica charantia OX=... [more]
BLAST of Carg24196 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G73710.11.1e-9046.76Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G23020.11.5e-5537.81Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G46580.17.5e-2624.26pentatricopeptide (PPR) repeat-containing protein [more]
AT5G39980.17.0e-2424.03Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G35130.16.6e-2221.92Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 275..408
e-value: 1.2E-23
score: 86.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 96..257
e-value: 1.6E-31
score: 111.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 324..349
e-value: 2.3E-4
score: 19.1
coord: 190..223
e-value: 8.9E-7
score: 26.7
coord: 156..187
e-value: 1.1E-6
score: 26.4
coord: 275..302
e-value: 1.0E-6
score: 26.5
coord: 360..387
e-value: 1.9E-5
score: 22.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 151..198
e-value: 1.1E-7
score: 31.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 360..387
e-value: 2.0E-5
score: 24.6
coord: 324..349
e-value: 8.8E-4
score: 19.4
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 274..299
e-value: 1.2E-6
score: 28.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 187..221
score: 10.128299
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 355..389
score: 10.325603
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 272..306
score: 9.920034
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 152..186
score: 10.807899
NoneNo IPR availablePANTHERPTHR45613PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 303..399
coord: 101..256
coord: 265..302
NoneNo IPR availablePANTHERPTHR45613:SF70CRP1-LIKE PROTEINcoord: 265..302
NoneNo IPR availablePANTHERPTHR45613:SF70CRP1-LIKE PROTEINcoord: 101..256
coord: 303..399

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24196-RACarg24196-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding