Carg24183 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24183
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ty3-gypsy retrotransposon protein
Location	Carg_Chr06: 6171408 .. 6173394 (-)
RNA-Seq Expression	Carg24183
Synteny	Carg24183

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTGCGAGGAAAGGTGGGTAACAAAGATGTGATGGTTTTGATCGATTGTGGCACTACCCATAATTTCATCTCACACCGATTGGTTGATGAACGGGAACTTCCAAAGACTGAAACTACGAACTACGACATTGTGACTGGAACAACATTGCTGTGAAGGGCAAGGGCATTTATCAAGATGTCATGGTACACTTACCGGAGTTAACTATCCAAGAGGATTTCTTACCCTTGGACCTAAGGGGAATCGGTGTAATTTTGGGGTTGCAATAGCTGAGAACAAAGAGATTCATGGGAGTGAATTGGACAAACTTGACGATGGCCCTCAAAGTAAGGACCAATAAAGTTACAATTAGAAGGGACCCATCATTAACAAAGGTTGAAGTATTGTTAAAGATGTTAGCGAAATTGTGGTCAAAGCGCGACCAAGGTTTTCTATTTGAGTTGCAAGATCTATCAATGGAAGAACAAGGGCAAAAGAGAAAAGGCAATGATAGTTGCCCAATGAGATACAAAAACTTTTGTAATAATCTACATGTCTTTCAACTGCCAACAAGGTTACCACCTAAAAGGAATGCTGACCATCAAATTGTGAGTGGTAGAAGGGCAACAACCGGTGAATGTCTGACCCTACAAGTATACACGTGCAGAAGTCAGAGATAGAGAGATGTTGATAGTAAAATGTTGGCTTATAGAATCATCAAACATAGCACAAGCCCCTTGTCTGTTGGTCAATAAGAAGGATGGTGGATGGAGGTTCTATGTTGATTACAAAGCTTTAAACCAAGTGACGATTCCCAACAATTTTCCCATTCTAGTCATATAAGAACTCTTTGATGAGCTCTATGGATCCATGGTGTTCTCTAGTCTCGACCTCAAATCAAGGTATCACCAGATATGTATGAACAAGCAAGATATACCAAAAACAATGTTTAGGACTCAAGAAGGCCAGTGTGGGCTAACCAACATTCCCGCTACTTTCCAATTCCTTATGAACCAGGTATTTCGACCCTTTTGGAGATGATCTACATTAGTCTTCTGTAAAGACATCGTATTCTACAGCCCAGAATTTTCCAGTCACCTTACACCTGTGTGCGGTGTTTAACATTTTGAGGGACAATGCGTTTTTCAGCAATGTTAAGAAATACGTCTTTACCCAATACTAAATAAAGTATCTGCCAATGGGGTCAAGGCTGATAAAGGAAAGACTTGAGCCATGATCAACTGGGCAACATCAAGGTCAGAGAAAGAATTGAGGAGTTTTTTGGGGTTGACGGGCTATTACAAATGTTTTGTGTTGAATTATGATATCATGGCAGGTCCTTTACATTAGTTTCTCATAAGAGATTCCTTCATGTGGACTACCAAGGAAACTGTGGCATTCAATGCCTTGAAAGAAGCAAGGGTGATACCTCTGGTACTTACTTAACATGATTAGAGATGTTTATATGACCCAAAAGTCCGAACAACCCAGACTACCAAGTTTGGGTTGGGTTCTTTTCTCTTTTTTTTTTTTTTTTTTGGTTGGGTTGGATTTTTGGAAAACCAAAAATTTAGTTCAGTATGCGGGTTTGAACAGTTTTTGTCGGACTAACTGACCAACCAGAAAGTATGTTTCACAACCCAACCCTACTTTTAAGATTGTTATGAAAAATAAGACCATTTGACATTTCTAATAGGCATTGGTGATGCATCGTAACTTGTGAATATTTGATATTTGACTTCTATCAGATTTTAGTTATTAATGTGATATGTATTGTGGACCAAAAAAATTTCTTAACCCAACCCAACCTATATATACACTTAACCTGATTTTTCTTGCCCTTCTGTGATCAAAACGGATGCATCAAGCACCAGTATTGGTGTCACTCTCTCCCAACAGCAGCATCCTATAGCTTATTTCAATCAGACCTTATCAGGGCGATAGTGCTGCCAATACAGAAATGGTATCATTATCTGCTGGGGCAAAAATTTACCCTGTTGACTAA

mRNA sequence

ATGAAAGTGCGAGGAAAGGTGGGTAACAAAGATGTGATGGTTTTGATCGATTGTGGCACTACCCATAATTTCATCTCACACCGATTGGTTGATGAACGGGAACTTCCAAAGACTGAAACTACGAACTACGACATTGGCAAGGGCATTTATCAAGATGTCATGGTACACTTACCGGAGTTAACTATCCAAGAGGATTTCTTACCCTTGGACCTAAGGGGAATCGGTCTGAGAACAAAGAGATTCATGGGAGTGAATTGGACAAACTTGACGATGGCCCTCAAAGTAAGGACCAATAAAGTTACAATTAGAAGGGACCCATCATTAACAAAGGTTGAAGTATTGTTAAAGATGTTAGCGAAATTGTGGTCAAAGCGCGACCAAGGTTTTCTATTTGAGTTGCAAGATCTATCAATGGAAGAACAAGGGCAAAAGAGAAAAGGCAATGATAGTTGCCCAATGAGATACAAAAACTTTTGTAATAATCTACATGGCGATAGTGCTGCCAATACAGAAATGGTATCATTATCTGCTGGGGCAAAAATTTACCCTGTTGACTAA

Coding sequence (CDS)

ATGAAAGTGCGAGGAAAGGTGGGTAACAAAGATGTGATGGTTTTGATCGATTGTGGCACTACCCATAATTTCATCTCACACCGATTGGTTGATGAACGGGAACTTCCAAAGACTGAAACTACGAACTACGACATTGGCAAGGGCATTTATCAAGATGTCATGGTACACTTACCGGAGTTAACTATCCAAGAGGATTTCTTACCCTTGGACCTAAGGGGAATCGGTCTGAGAACAAAGAGATTCATGGGAGTGAATTGGACAAACTTGACGATGGCCCTCAAAGTAAGGACCAATAAAGTTACAATTAGAAGGGACCCATCATTAACAAAGGTTGAAGTATTGTTAAAGATGTTAGCGAAATTGTGGTCAAAGCGCGACCAAGGTTTTCTATTTGAGTTGCAAGATCTATCAATGGAAGAACAAGGGCAAAAGAGAAAAGGCAATGATAGTTGCCCAATGAGATACAAAAACTTTTGTAATAATCTACATGGCGATAGTGCTGCCAATACAGAAATGGTATCATTATCTGCTGGGGCAAAAATTTACCCTGTTGACTAA

Protein sequence

MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDIGKGIYQDVMVHLPELTIQEDFLPLDLRGIGLRTKRFMGVNWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQKRKGNDSCPMRYKNFCNNLHGDSAANTEMVSLSAGAKIYPVD

Homology

[Close]

BLAST of Carg24183 vs. NCBI nr
Match: KAG7028493.1 (hypothetical protein SDJN02_09674, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 377.1 bits (967), Expect = 8.7e-101
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDIGKGIYQDVMVHLPEL 60
           MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDIGKGIYQDVMVHLPEL
Sbjct: 1   MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDIGKGIYQDVMVHLPEL 60

Query: 61  TIQEDFLPLDLRGIGLRTKRFMGVNWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAK 120
           TIQEDFLPLDLRGIGLRTKRFMGVNWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAK
Sbjct: 61  TIQEDFLPLDLRGIGLRTKRFMGVNWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAK 120

Query: 121 LWSKRDQGFLFELQDLSMEEQGQKRKGNDSCPMRYKNFCNNLHGDSAANTEMVSLSAGAK 180
           LWSKRDQGFLFELQDLSMEEQGQKRKGNDSCPMRYKNFCNNLHGDSAANTEMVSLSAGAK
Sbjct: 121 LWSKRDQGFLFELQDLSMEEQGQKRKGNDSCPMRYKNFCNNLHGDSAANTEMVSLSAGAK 180

Query: 181 IYPVD 186
           IYPVD
Sbjct: 181 IYPVD 185

[Close]

BLAST of Carg24183 vs. NCBI nr
Match: XP_022154744.1 (uncharacterized protein LOC111021922 [Momordica charantia])

HSP 1 Score: 138.3 bits (347), Expect = 6.8e-29
Identity = 71/160 (44.38%), Postives = 106/160 (66.25%), Query Frame = 0


Query: 1   MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQ 60
           MK+RG + +K+V++LIDCG THNFIS +LVD   LP  ET+NY +         GKGI +
Sbjct: 368 MKLRGLIEDKEVVILIDCGATHNFISQKLVDAFNLPLHETSNYGVIMGTGVVVRGKGICK 427

Query: 61  DVMVHLPELTIQEDFLPLDLRGIG-------LRTKRFMGVNWTNLTMALKVRTNKVTIRR 120
            ++++LPELTI+E+FLPL+L  +        L T+  M V+W  LTM+ +  +N++ ++ 
Sbjct: 428 GIILYLPELTIRENFLPLELGNLDVVLGMQWLSTQGTMEVDWQALTMSFRNGSNRIILKG 487

Query: 121 DPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK 145
           DP+L ++EV LK LA+ W   DQGFL EL+  S + +GQ+
Sbjct: 488 DPTLMRMEVTLKKLARTWETHDQGFLVELRAFSAQPEGQE 527

[Close]

BLAST of Carg24183 vs. NCBI nr
Match: KAA0062882.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 4.6e-25
Identity = 62/160 (38.75%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 1   MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQ 60
           MKV+GK+  K+V++LIDCG THNFIS +LV+  +LP  ET +YD+         GKGI +
Sbjct: 112 MKVKGKIQEKEVIILIDCGATHNFISEKLVESLQLPVKETAHYDVILGSGRAVQGKGICE 171

Query: 61  DVMVHLPELTIQEDFLPLDLRGI----GLRTKRFMG---VNWTNLTMALKVRTNKVTIRR 120
           +V + L    ++E+FLPL+L G+    G++    +G   V+W NLT+       +++I+ 
Sbjct: 172 NVEIQLTNWKVKEEFLPLELGGVDVVLGMQWLHSLGITVVDWKNLTLTFYSEGKQISIKG 231

Query: 121 DPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK 145
           DPSLTK+ + LK + K W ++D+GFL E + + + ++ ++
Sbjct: 232 DPSLTKLRISLKSMIKTWVEQDEGFLIECRAVQVHKENER 271

[Close]

BLAST of Carg24183 vs. NCBI nr
Match: TYK22515.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 4.6e-25
Identity = 62/160 (38.75%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 1   MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQ 60
           MKV+GK+  K+V++LIDCG THNFIS +LV+  +LP  ET +YD+         GKGI +
Sbjct: 112 MKVKGKIQEKEVIILIDCGATHNFISEKLVESLQLPVKETAHYDVILGSGRAVQGKGICE 171

Query: 61  DVMVHLPELTIQEDFLPLDLRGI----GLRTKRFMG---VNWTNLTMALKVRTNKVTIRR 120
           +V + L    ++E+FLPL+L G+    G++    +G   V+W NLT+       +++I+ 
Sbjct: 172 NVEIQLTNWKVKEEFLPLELGGVDVVLGMQWLHSLGITVVDWKNLTLTFYSEGKQISIKG 231

Query: 121 DPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK 145
           DPSLTK+ + LK + K W ++D+GFL E + + + ++ ++
Sbjct: 232 DPSLTKLRISLKSMIKTWVEQDEGFLIECRAVQVHKENER 271

[Close]

BLAST of Carg24183 vs. NCBI nr
Match: ADN34016.1 (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-24
Identity = 72/157 (45.86%), Postives = 96/157 (61.15%), Query Frame = 0


Query: 2   KVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQD 61
           K++GKV +++V+V+IDCG THNFIS RLV+E ++  TETT Y +         GKG+   
Sbjct: 371 KIKGKVEDREVVVMIDCGATHNFISLRLVEEMQIATTETTQYGVIMGSGKAVQGKGMCTG 430

Query: 62  VMVHLPELTIQEDFLPLDLRGIG-------LRTKRFMGVNWTNLTMALKVRTNKVTIRRD 121
           V+V LP LT+ EDFLPL+L  +        L  +  M V+W NL M   VR  KV +R D
Sbjct: 431 VVVGLPGLTVVEDFLPLELGHLDMVLGMQWLPKQGAMTVDWRNLAMTFAVRDVKVMLRGD 490

Query: 122 PSLTKVEVLLKMLAKLWSKRDQGFLFELQ--DLSMEE 141
            SLT++ + LKML K W   D+GFL  LQ  D S +E
Sbjct: 491 LSLTRMAISLKMLMKQWQPEDRGFLSLLQSSDTSQKE 527

[Close]

BLAST of Carg24183 vs. ExPASy TrEMBL
Match: A0A6J1DN22 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111021922 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.3e-29
Identity = 71/160 (44.38%), Postives = 106/160 (66.25%), Query Frame = 0


Query: 1   MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQ 60
           MK+RG + +K+V++LIDCG THNFIS +LVD   LP  ET+NY +         GKGI +
Sbjct: 368 MKLRGLIEDKEVVILIDCGATHNFISQKLVDAFNLPLHETSNYGVIMGTGVVVRGKGICK 427

Query: 61  DVMVHLPELTIQEDFLPLDLRGIG-------LRTKRFMGVNWTNLTMALKVRTNKVTIRR 120
            ++++LPELTI+E+FLPL+L  +        L T+  M V+W  LTM+ +  +N++ ++ 
Sbjct: 428 GIILYLPELTIRENFLPLELGNLDVVLGMQWLSTQGTMEVDWQALTMSFRNGSNRIILKG 487

Query: 121 DPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK 145
           DP+L ++EV LK LA+ W   DQGFL EL+  S + +GQ+
Sbjct: 488 DPTLMRMEVTLKKLARTWETHDQGFLVELRAFSAQPEGQE 527

[Close]

BLAST of Carg24183 vs. ExPASy TrEMBL
Match: A0A5A7V3R8 (Eukaryotic translation initiation factor 3 30 kDa subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4427G00120 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.2e-25
Identity = 62/160 (38.75%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 1   MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQ 60
           MKV+GK+  K+V++LIDCG THNFIS +LV+  +LP  ET +YD+         GKGI +
Sbjct: 112 MKVKGKIQEKEVIILIDCGATHNFISEKLVESLQLPVKETAHYDVILGSGRAVQGKGICE 171

Query: 61  DVMVHLPELTIQEDFLPLDLRGI----GLRTKRFMG---VNWTNLTMALKVRTNKVTIRR 120
           +V + L    ++E+FLPL+L G+    G++    +G   V+W NLT+       +++I+ 
Sbjct: 172 NVEIQLTNWKVKEEFLPLELGGVDVVLGMQWLHSLGITVVDWKNLTLTFYSEGKQISIKG 231

Query: 121 DPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK 145
           DPSLTK+ + LK + K W ++D+GFL E + + + ++ ++
Sbjct: 232 DPSLTKLRISLKSMIKTWVEQDEGFLIECRAVQVHKENER 271

[Close]

BLAST of Carg24183 vs. ExPASy TrEMBL
Match: A0A5D3DG34 (Eukaryotic translation initiation factor 3 30 kDa subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00130 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.2e-25
Identity = 62/160 (38.75%), Postives = 102/160 (63.75%), Query Frame = 0


Query: 1   MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQ 60
           MKV+GK+  K+V++LIDCG THNFIS +LV+  +LP  ET +YD+         GKGI +
Sbjct: 112 MKVKGKIQEKEVIILIDCGATHNFISEKLVESLQLPVKETAHYDVILGSGRAVQGKGICE 171

Query: 61  DVMVHLPELTIQEDFLPLDLRGI----GLRTKRFMG---VNWTNLTMALKVRTNKVTIRR 120
           +V + L    ++E+FLPL+L G+    G++    +G   V+W NLT+       +++I+ 
Sbjct: 172 NVEIQLTNWKVKEEFLPLELGGVDVVLGMQWLHSLGITVVDWKNLTLTFYSEGKQISIKG 231

Query: 121 DPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK 145
           DPSLTK+ + LK + K W ++D+GFL E + + + ++ ++
Sbjct: 232 DPSLTKLRISLKSMIKTWVEQDEGFLIECRAVQVHKENER 271

[Close]

BLAST of Carg24183 vs. ExPASy TrEMBL
Match: E5GC18 (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 72/157 (45.86%), Postives = 96/157 (61.15%), Query Frame = 0


Query: 2   KVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQD 61
           K++GKV +++V+V+IDCG THNFIS RLV+E ++  TETT Y +         GKG+   
Sbjct: 371 KIKGKVEDREVVVMIDCGATHNFISLRLVEEMQIATTETTQYGVIMGSGKAVQGKGMCTG 430

Query: 62  VMVHLPELTIQEDFLPLDLRGIG-------LRTKRFMGVNWTNLTMALKVRTNKVTIRRD 121
           V+V LP LT+ EDFLPL+L  +        L  +  M V+W NL M   VR  KV +R D
Sbjct: 431 VVVGLPGLTVVEDFLPLELGHLDMVLGMQWLPKQGAMTVDWRNLAMTFAVRDVKVMLRGD 490

Query: 122 PSLTKVEVLLKMLAKLWSKRDQGFLFELQ--DLSMEE 141
            SLT++ + LKML K W   D+GFL  LQ  D S +E
Sbjct: 491 LSLTRMAISLKMLMKQWQPEDRGFLSLLQSSDTSQKE 527

[Close]

BLAST of Carg24183 vs. ExPASy TrEMBL
Match: A0A5D3D5G0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00880 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.5e-24
Identity = 65/155 (41.94%), Postives = 94/155 (60.65%), Query Frame = 0


Query: 1   MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQ 60
           MKVRG + +K+V++LIDCG THNF+S +LV   +LP  ET +Y +         GKGI +
Sbjct: 304 MKVRGTLQDKEVVILIDCGATHNFVSEKLVTTLQLPIKETAHYGVILGSGTEIQGKGICE 363

Query: 61  DVMVHLPELTIQEDFLPLDLRGI----GLRTKRFMGV---NWTNLTMALKVRTNKVTIRR 120
            V V + + T++EDFLPL+L G+    G++    +GV   +W NLT+       K+ I+ 
Sbjct: 364 SVEVQMKDWTVKEDFLPLELGGVDVILGMQWLYSLGVTVCDWKNLTLTFYDDKKKICIKG 423

Query: 121 DPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSME 140
           DPSLTK  V LK L K W + D G+L E + + +E
Sbjct: 424 DPSLTKARVSLKNLVKTWEEHDHGYLIECRSMGIE 458

The following BLAST results are available for this feature:

BLAST of Carg24183 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028493.1	8.7e-101	100.00	hypothetical protein SDJN02_09674, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022154744.1	6.8e-29	44.38	uncharacterized protein LOC111021922 [Momordica charantia]	[more]
KAA0062882.1	4.6e-25	38.75	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]	[more]
TYK22515.1	4.6e-25	38.75	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]	[more]
ADN34016.1	2.3e-24	45.86	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]

BLAST of Carg24183 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24183 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DN22	3.3e-29	44.38	Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111021922 PE=4 SV=1	[more]
A0A5A7V3R8	2.2e-25	38.75	Eukaryotic translation initiation factor 3 30 kDa subunit OS=Cucumis melo var. m...	[more]
A0A5D3DG34	2.2e-25	38.75	Eukaryotic translation initiation factor 3 30 kDa subunit OS=Cucumis melo var. m...	[more]
E5GC18	1.1e-24	45.86	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=...	[more]
A0A5D3D5G0	2.5e-24	41.94	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Carg24183 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 1..114 e-value: 4.1E-8 score: 34.9
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 3..71 e-value: 3.04564E-8 score: 47.3312

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24183-RA	Carg24183-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process