Carg24181 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24181
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
LocationCarg_Chr06: 6197676 .. 6198585 (+)
RNA-Seq ExpressionCarg24181
SyntenyCarg24181
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAGCTATGTGGCGCCAAAGATGTAAAATCTAAGTGGTTACCAGAGGGTGATGCCAACACTGCTTTTTCCCACCTTGTTGTACAGCTAATAGATGAAGGAACCATTGTGGAAATTCTTTCAGCTAATCTAGTGAATGGCAATGGGATAGAGAGGGAGCTCATAGGCTTTTATAGAAAGCTTTTCACCAAAAAGGATGGTAGGAGAACAGTGCTCGATAATAGGGATATAAGCCCTATTACAGCCGAACAGAGAGACTTCTTAGAGACTCCTTTCACAGAAGTGGAAATTTACAAAGTATTTATAGATTTGGGATCTAATAAGACACCTGGGCCTGATGGATCTACCAATGAATTCCTTAGAAAATCATGGAACATCCAGGAAGACATAATAGGAGTGTTCGATGATATTTTTAGGAATACGATCATTAATGCTATCTTTAGCAAAACATATATTTGTCTCATCCCAAAAAGGAACATCAGTAAACTAGTGAGTGATGATTGGCTGATTTGCCTCACTACTTGTCTTTAGAATGTTATAGCCAGAGTACTCTCAGACAGGATGTAACCTCTAATGAATAAGAAGGGGAATCCCCTTTCCTCTTTCTTATTCATCCTTGTGTATGATTGCTTAAGTAGGATGCCTTTATTGGCCGCCTACTTTTTTGGGTCTCCCTCTGAATATCAATCCTCGTCATCAATCTTTGTTTCACGCATAGATAAAGGTGGGAGACACTCATACAAGCTACCTCACTAATTTTCCCATATGTTACTTCTCATTATTTCTTGTTCCTGCTGAAGTCACAATGATTATTGAGAAGTTGTACATGAATTTTCTTTGGAAGGGAGGCCAAAATAGAAAGGGCAGCCACCTTCTTAGATGGTCTATCTATCCAAGCACCTATTGA

mRNA sequence

ATGAAGCAGCTATGTGGCGCCAAAGATGTAAAATCTAAGTGGTTACCAGAGGGTGATGCCAACACTGCTTTTTCCCACCTTGTTGTACAGCTAATAGATGAAGGAACCATTGTGGAAATTCTTTCAGCTAATCTAGTGAATGGCAATGGGATAGAGAGGGAGCTCATAGGCTTTTATAGAAAGCTTTTCACCAAAAAGGATGGTAGGAGAACAGTGCTCGATAATAGGGATATAAGCCCTATTACAGCCGAACAGAGAGACTTCTTAGAGACTCCTTTCACAGAAGTGGAAATTTACAAAGTATTTATAGATTTGGGATCTAATAAGACACCTGGGCCTGATGGATCTACCAATGAATTCCTTAGAAAATCATGGAACATCCAGGAAGACATAATAGGAGTGTTCGATGATATTTTTAGGAATACGATCATTAATGCTATCTTTAGCAAAACATATATTTGTCTCATCCCAAAAAGGAACATCAGTAAACTAATAAAGGTGGGAGACACTCATACAAGCTACCTCACTAATTTTCCCATATGTTACTTCTCATTATTTCTTGTTCCTGCTGAAGTCACAATGATTATTGAGAAGTTGTACATGAATTTTCTTTGGAAGGGAGGCCAAAATAGAAAGGGCAGCCACCTTCTTAGATGGTCTATCTATCCAAGCACCTATTGA

Coding sequence (CDS)

ATGAAGCAGCTATGTGGCGCCAAAGATGTAAAATCTAAGTGGTTACCAGAGGGTGATGCCAACACTGCTTTTTCCCACCTTGTTGTACAGCTAATAGATGAAGGAACCATTGTGGAAATTCTTTCAGCTAATCTAGTGAATGGCAATGGGATAGAGAGGGAGCTCATAGGCTTTTATAGAAAGCTTTTCACCAAAAAGGATGGTAGGAGAACAGTGCTCGATAATAGGGATATAAGCCCTATTACAGCCGAACAGAGAGACTTCTTAGAGACTCCTTTCACAGAAGTGGAAATTTACAAAGTATTTATAGATTTGGGATCTAATAAGACACCTGGGCCTGATGGATCTACCAATGAATTCCTTAGAAAATCATGGAACATCCAGGAAGACATAATAGGAGTGTTCGATGATATTTTTAGGAATACGATCATTAATGCTATCTTTAGCAAAACATATATTTGTCTCATCCCAAAAAGGAACATCAGTAAACTAATAAAGGTGGGAGACACTCATACAAGCTACCTCACTAATTTTCCCATATGTTACTTCTCATTATTTCTTGTTCCTGCTGAAGTCACAATGATTATTGAGAAGTTGTACATGAATTTTCTTTGGAAGGGAGGCCAAAATAGAAAGGGCAGCCACCTTCTTAGATGGTCTATCTATCCAAGCACCTATTGA

Protein sequence

MKQLCGAKDVKSKWLPEGDANTAFSHLVVQLIDEGTIVEILSANLVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEFLRKSWNIQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGDTHTSYLTNFPICYFSLFLVPAEVTMIIEKLYMNFLWKGGQNRKGSHLLRWSIYPSTY
Homology
[Close]
BLAST of Carg24181 vs. NCBI nr
Match: KAG7028494.1 (LINE-1 retrotransposable element ORF2 protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 466.1 bits (1198), Expect = 1.7e-127
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0 

Query: 1   MKQLCGAKDVKSKWLPEGDANTAFSHLVVQLIDEGTIVEILSANLVNGNGIERELIGFYR 60
           MKQLCGAKDVKSKWLPEGDANTAFSHLVVQLIDEGTIVEILSANLVNGNGIERELIGFYR
Sbjct: 1   MKQLCGAKDVKSKWLPEGDANTAFSHLVVQLIDEGTIVEILSANLVNGNGIERELIGFYR 60

Query: 61  KLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEF 120
           KLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEF
Sbjct: 61  KLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEF 120

Query: 121 LRKSWNIQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGDTHTSYLTNFPI 180
           LRKSWNIQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGDTHTSYLTNFPI
Sbjct: 121 LRKSWNIQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGDTHTSYLTNFPI 180

Query: 181 CYFSLFLVPAEVTMIIEKLYMNFLWKGGQNRKGSHLLRWSIYPSTY 227
           CYFSLFLVPAEVTMIIEKLYMNFLWKGGQNRKGSHLLRWSIYPSTY
Sbjct: 181 CYFSLFLVPAEVTMIIEKLYMNFLWKGGQNRKGSHLLRWSIYPSTY 226

[Close]
BLAST of Carg24181 vs. NCBI nr
Match: RVW78846.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 109.0 bits (271), Expect = 5.4e-20
Identity = 56/158 (35.44%), Postives = 89/158 (56.33%), Query Frame = 0 

Query: 13  KWLPEGDANTAFSHLVVQLIDEGTIVEILSAN----LVNGNGIERELIGFYRKLFTKKDG 72
           KW+ EGD N+ F H V         +++L       L N + I+ E++ ++ KL+    G
Sbjct: 107 KWVKEGDCNSKFFHKVANGRRNRKFIKVLENERGLVLDNSDSIKEEILRYFEKLYASPSG 166

Query: 73  RRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEFLRKSWN-I 132
               ++  D SPI+ E    LE+PFTE EIYK    +  +K PGPDG T    +  W+ I
Sbjct: 167 ESWRVEGLDWSPISRESASRLESPFTEEEIYKAIFQMDRDKAPGPDGFTIAVFQDCWDVI 226

Query: 133 QEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLI 166
           +ED++ VFD+  R+ IIN   + ++I L+PK++++K I
Sbjct: 227 KEDLVRVFDEFHRSGIINQSTNASFIVLLPKKSMAKKI 264

[Close]
BLAST of Carg24181 vs. NCBI nr
Match: VVA31869.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 107.5 bits (267), Expect = 1.6e-19
Identity = 60/165 (36.36%), Postives = 91/165 (55.15%), Query Frame = 0 

Query: 11  KSKWLPEGDANTAFSHLVVQLIDEGTI-----VEILSANLVNGNGIERELIGFYRKLFTK 70
           K KW  EGD NT F H V   + +        VE L    V  N IERE+I F++ LF+ 
Sbjct: 2   KVKWAREGDGNTKFFHKVANGVRKRNYIDKLEVEDLGVIEVEAN-IEREVIRFFKGLFSS 61

Query: 71  KDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEFLRKSW 130
            +     +D  +  PI+  + D+LE PF   E+ K   D G +K+PGPDG +  F +  W
Sbjct: 62  NENAGWGVDGLNWCPISQTEADWLERPFELEEVQKAVFDCGKDKSPGPDGFSMSFFQSCW 121

Query: 131 N-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGD 170
             ++ D++ V  D F++ I+N + ++T+ICLIPK+  +  +KV D
Sbjct: 122 EVVKGDLMKVMQDFFQSGIVNGVTNETFICLIPKK--ANSVKVTD 163

[Close]
BLAST of Carg24181 vs. NCBI nr
Match: CAN79190.1 (hypothetical protein VITISV_000232 [Vitis vinifera])

HSP 1 Score: 105.9 bits (263), Expect = 4.6e-19
Identity = 54/156 (34.62%), Postives = 88/156 (56.41%), Query Frame = 0 

Query: 13   KWLPEGDANTAFSHLVVQLIDEGTIVEILSAN----LVNGNGIERELIGFYRKLFTKKDG 72
            KW+ EGD N+ F H V         +++L       L N + I+ E++ ++ KL+    G
Sbjct: 1079 KWVKEGDCNSKFFHKVANGRRNRKFIKVLENERGLVLDNSDSIKEEILRYFEKLYASPSG 1138

Query: 73   RRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEFLRKSWN-I 132
                ++  D SPI++E    LE+PFTE EI K    +  +K PGPDG T    +  W+ I
Sbjct: 1139 ESWRVEGLDWSPISSESASRLESPFTEEEISKAIFQMDRDKAPGPDGFTIAVFQDCWDVI 1198

Query: 133  QEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISK 164
            +ED++ VFD+  R+ IIN   + ++I L+PK++++K
Sbjct: 1199 KEDLVRVFDEFHRSGIINQSTNASFIVLLPKKSMAK 1234

[Close]
BLAST of Carg24181 vs. NCBI nr
Match: BBN69274.1 (TatD related DNase [Prunus dulcis])

HSP 1 Score: 105.9 bits (263), Expect = 4.6e-19
Identity = 60/165 (36.36%), Postives = 91/165 (55.15%), Query Frame = 0 

Query: 11  KSKWLPEGDANTAFSHLVVQLIDEGTI-----VEILSANLVNGNGIERELIGFYRKLFTK 70
           K KW  EGD NT F H V   + +        VE L    V  N IERE+I F++ LF+ 
Sbjct: 105 KVKWAREGDGNTKFFHKVANGVRKRNYIDKLEVEDLGVIEVEAN-IEREVIRFFKGLFSS 164

Query: 71  KDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEFLRKSW 130
            +     +D  +  PI+  + D+LE PF   E+ K   D G +K+PGPDG +  F +  W
Sbjct: 165 NEIAGWGVDGLNWCPISQTEADWLERPFELEEVQKAVFDCGKDKSPGPDGFSMSFFQSCW 224

Query: 131 N-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGD 170
             ++ D++ V  D F++ I+N + ++T+ICLIPK+  +  +KV D
Sbjct: 225 EVVKGDLMKVMQDFFQSGIVNGVTNETFICLIPKK--ANSVKVTD 266

[Close]
BLAST of Carg24181 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-06
Identity = 36/117 (30.77%), Postives = 58/117 (49.57%), Query Frame = 0 

Query: 51  IERELIGFYRKLFTKK----DGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLG 110
           I+  +  FY++L++ K    D     LD   +  +  +Q D L +P +  EI  V   L 
Sbjct: 414 IQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLP 473

Query: 111 SNKTPGPDGSTNEFLRKSWNIQEDIIGVFDDIF-----RNTIINAIFSKTYICLIPK 159
           + K+PGPDG + EF +     +ED+I +   +F       T+ N+ +  T I LIPK
Sbjct: 474 TKKSPGPDGFSAEFYQ---TFKEDLIPILHKLFHKIEVEGTLPNSFYEAT-ITLIPK 526

[Close]
BLAST of Carg24181 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 8.7e-05
Identity = 33/113 (29.20%), Postives = 53/113 (46.90%), Query Frame = 0 

Query: 51  IERELIGFYRKLFTKK----DGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLG 110
           I+  +  +Y+ L+  K    +   T LD   +  +  E+ + L  P T  EI  +   L 
Sbjct: 407 IQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLP 466

Query: 111 SNKTPGPDGSTNEFL-RKSWNIQEDIIGVFDDIFRNTIINAIFSKTYICLIPK 159
           + K+PGPDG T EF  R    +   ++ +F  I +  I+   F +  I LIPK
Sbjct: 467 TKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPK 519

[Close]
BLAST of Carg24181 vs. ExPASy TrEMBL
Match: A0A438H2J5 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_222 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.6e-20
Identity = 56/158 (35.44%), Postives = 89/158 (56.33%), Query Frame = 0 

Query: 13  KWLPEGDANTAFSHLVVQLIDEGTIVEILSAN----LVNGNGIERELIGFYRKLFTKKDG 72
           KW+ EGD N+ F H V         +++L       L N + I+ E++ ++ KL+    G
Sbjct: 107 KWVKEGDCNSKFFHKVANGRRNRKFIKVLENERGLVLDNSDSIKEEILRYFEKLYASPSG 166

Query: 73  RRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEFLRKSWN-I 132
               ++  D SPI+ E    LE+PFTE EIYK    +  +K PGPDG T    +  W+ I
Sbjct: 167 ESWRVEGLDWSPISRESASRLESPFTEEEIYKAIFQMDRDKAPGPDGFTIAVFQDCWDVI 226

Query: 133 QEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLI 166
           +ED++ VFD+  R+ IIN   + ++I L+PK++++K I
Sbjct: 227 KEDLVRVFDEFHRSGIINQSTNASFIVLLPKKSMAKKI 264

[Close]
BLAST of Carg24181 vs. ExPASy TrEMBL
Match: A0A5E4FWN6 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035884 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.6e-20
Identity = 60/165 (36.36%), Postives = 91/165 (55.15%), Query Frame = 0 

Query: 11  KSKWLPEGDANTAFSHLVVQLIDEGTI-----VEILSANLVNGNGIERELIGFYRKLFTK 70
           K KW  EGD NT F H V   + +        VE L    V  N IERE+I F++ LF+ 
Sbjct: 2   KVKWAREGDGNTKFFHKVANGVRKRNYIDKLEVEDLGVIEVEAN-IEREVIRFFKGLFSS 61

Query: 71  KDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEFLRKSW 130
            +     +D  +  PI+  + D+LE PF   E+ K   D G +K+PGPDG +  F +  W
Sbjct: 62  NENAGWGVDGLNWCPISQTEADWLERPFELEEVQKAVFDCGKDKSPGPDGFSMSFFQSCW 121

Query: 131 N-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGD 170
             ++ D++ V  D F++ I+N + ++T+ICLIPK+  +  +KV D
Sbjct: 122 EVVKGDLMKVMQDFFQSGIVNGVTNETFICLIPKK--ANSVKVTD 163

[Close]
BLAST of Carg24181 vs. ExPASy TrEMBL
Match: A5BQD9 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_000232 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-19
Identity = 54/156 (34.62%), Postives = 88/156 (56.41%), Query Frame = 0 

Query: 13   KWLPEGDANTAFSHLVVQLIDEGTIVEILSAN----LVNGNGIERELIGFYRKLFTKKDG 72
            KW+ EGD N+ F H V         +++L       L N + I+ E++ ++ KL+    G
Sbjct: 1079 KWVKEGDCNSKFFHKVANGRRNRKFIKVLENERGLVLDNSDSIKEEILRYFEKLYASPSG 1138

Query: 73   RRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEFLRKSWN-I 132
                ++  D SPI++E    LE+PFTE EI K    +  +K PGPDG T    +  W+ I
Sbjct: 1139 ESWRVEGLDWSPISSESASRLESPFTEEEISKAIFQMDRDKAPGPDGFTIAVFQDCWDVI 1198

Query: 133  QEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISK 164
            +ED++ VFD+  R+ IIN   + ++I L+PK++++K
Sbjct: 1199 KEDLVRVFDEFHRSGIINQSTNASFIVLLPKKSMAK 1234

[Close]
BLAST of Carg24181 vs. ExPASy TrEMBL
Match: A0A5H2XQW2 (TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_862S001100 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-19
Identity = 60/165 (36.36%), Postives = 91/165 (55.15%), Query Frame = 0 

Query: 11  KSKWLPEGDANTAFSHLVVQLIDEGTI-----VEILSANLVNGNGIERELIGFYRKLFTK 70
           K KW  EGD NT F H V   + +        VE L    V  N IERE+I F++ LF+ 
Sbjct: 105 KVKWAREGDGNTKFFHKVANGVRKRNYIDKLEVEDLGVIEVEAN-IEREVIRFFKGLFSS 164

Query: 71  KDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEFLRKSW 130
            +     +D  +  PI+  + D+LE PF   E+ K   D G +K+PGPDG +  F +  W
Sbjct: 165 NEIAGWGVDGLNWCPISQTEADWLERPFELEEVQKAVFDCGKDKSPGPDGFSMSFFQSCW 224

Query: 131 N-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGD 170
             ++ D++ V  D F++ I+N + ++T+ICLIPK+  +  +KV D
Sbjct: 225 EVVKGDLMKVMQDFFQSGIVNGVTNETFICLIPKK--ANSVKVTD 266

[Close]
BLAST of Carg24181 vs. ExPASy TrEMBL
Match: A0A438I435 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_401 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-19
Identity = 62/172 (36.05%), Postives = 92/172 (53.49%), Query Frame = 0 

Query: 11  KSKWLPEGDANTAFSHLVVQLIDEGTIVEILSAN----LVNGNGIERELIGFYRKLFTKK 70
           K KW+ EGD N+ F H V         ++ L       L N   I  E++ ++ KL+T  
Sbjct: 477 KVKWVKEGDCNSKFYHKVANGRRNRKYIKELENERGLVLKNAESITEEILHYFEKLYTNP 536

Query: 71  DGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEFLRKSWN 130
            G    ++  D SPI+ E    LE+PFTE EI K    L  +K PGPDG T    ++ W+
Sbjct: 537 TGESWGVEGLDWSPISEESALRLESPFTEEEISKAIFQLDRDKAPGPDGFTIAVFQECWD 596

Query: 131 -IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGDTHTSYLTN 178
            I+ED++ VF +  R+ IIN   + ++I LIPK+++SK I     H S +T+
Sbjct: 597 VIKEDLVRVFAEFHRSGIINQSTNASFIVLIPKKSLSKRIS-DFRHISLITS 647

[Close]
BLAST of Carg24181 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-09
Identity = 45/156 (28.85%), Postives = 66/156 (42.31%), Query Frame = 0 

Query: 13  KWLPEGDANTAFSHLVVQLIDEGTIVEIL----SANLVNGNGIERELIGFYRKLFTKKDG 72
           KWL +GDANT F H V+       +++ L       + N   ++  ++ +Y  L      
Sbjct: 442 KWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSD 501

Query: 73  RRT---VLDNRDISPITAEQ--RDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEFLRK 132
             T   V   +DI P          L    ++ EI      +  NK PGPD  T EF  +
Sbjct: 502 ILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWE 561

Query: 133 SWNIQED-IIGVFDDIFRNTIINAIFSKTYICLIPK 159
           SW + +D  I    + FR   +   F+ T I LIPK
Sbjct: 562 SWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPK 597

The following BLAST results are available for this feature:
BLAST of Carg24181 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028494.11.7e-127100.00LINE-1 retrotransposable element ORF2 protein, partial [Cucurbita argyrosperma s... [more]
RVW78846.15.4e-2035.44Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
VVA31869.11.6e-1936.36Hypothetical predicted protein, partial [Prunus dulcis][more]
CAN79190.14.6e-1934.62hypothetical protein VITISV_000232 [Vitis vinifera][more]
BBN69274.14.6e-1936.36TatD related DNase [Prunus dulcis][more]
BLAST of Carg24181 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P113692.1e-0630.77LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE... [more]
O003708.7e-0529.20LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1[more]
BLAST of Carg24181 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438H2J52.6e-2035.44Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... [more]
A0A5E4FWN67.6e-2036.36Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3... [more]
A5BQD92.2e-1934.62Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... [more]
A0A5H2XQW22.2e-1936.36TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_862S001100 PE=4 SV=1[more]
A0A438I4352.9e-1936.05Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... [more]
BLAST of Carg24181 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G43760.11.6e-0928.85DNAse I-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24181-RACarg24181-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity