Carg24172 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24172
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein transport protein Sec61 subunit beta
Location	Carg_Chr06: 6258524 .. 6258772 (+)
RNA-Seq Expression	Carg24172
Synteny	Carg24172

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTAGGTGGAGGAGCTCCCCAGAGAGGAAGTGCGGCAGCTACTGCCAGCATGCGCAGGAGAAGGACGACAAGTTCAGGTACATCTGGAGGGGCAGCTGGAACAATGCTGCAATTTTACACGGATGATGCTCCTGGCCTCAAGATCTCCCCCAACGTTGTACTCGTCATGAGCATTGGTTTCATTGCGTTTGTTGCCATTCTCCATGTTATGGGAAAGCTGTACTTCGTGCGAAGAGAAGCCTAG

mRNA sequence

ATGGCACTAGGTGGAGGAGCTCCCCAGAGAGGAAGTGCGGCAGCTACTGCCAGCATGCGCAGGAGAAGGACGACAAGTTCAGGTACATCTGGAGGGGCAGCTGGAACAATGCTGCAATTTTACACGGATGATGCTCCTGGCCTCAAGATCTCCCCCAACGTTGTACTCGTCATGAGCATTGGTTTCATTGCGTTTGTTGCCATTCTCCATGTTATGGGAAAGCTGTACTTCGTGCGAAGAGAAGCCTAG

Coding sequence (CDS)

ATGGCACTAGGTGGAGGAGCTCCCCAGAGAGGAAGTGCGGCAGCTACTGCCAGCATGCGCAGGAGAAGGACGACAAGTTCAGGTACATCTGGAGGGGCAGCTGGAACAATGCTGCAATTTTACACGGATGATGCTCCTGGCCTCAAGATCTCCCCCAACGTTGTACTCGTCATGAGCATTGGTTTCATTGCGTTTGTTGCCATTCTCCATGTTATGGGAAAGCTGTACTTCGTGCGAAGAGAAGCCTAG

Protein sequence

MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

Homology

[Close]

BLAST of Carg24172 vs. NCBI nr
Match: XP_022950482.1 (protein transport protein Sec61 subunit beta-like [Cucurbita moschata] >XP_022974254.1 protein transport protein Sec61 subunit beta-like [Cucurbita maxima] >XP_022975750.1 protein transport protein Sec61 subunit beta-like [Cucurbita maxima] >XP_023541021.1 protein transport protein Sec61 subunit beta-like [Cucurbita pepo subsp. pepo] >KAG6597025.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028503.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 3.5e-33
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAILHVMGKLYFVRREA 83
          GFIAFVAILHVMGKLYFVRREA
Sbjct: 61 GFIAFVAILHVMGKLYFVRREA 82

[Close]

BLAST of Carg24172 vs. NCBI nr
Match: XP_011650635.1 (protein transport protein Sec61 subunit beta [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGGG PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAILHVMGKLYFVRREA 83
          GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61 GFIAFVAVLHVMGKLYFVRREA 82

[Close]

BLAST of Carg24172 vs. NCBI nr
Match: XP_038875187.1 (protein transport protein Sec61 subunit beta-like isoform X1 [Benincasa hispida])

HSP 1 Score: 149.1 bits (375), Expect = 1.7e-32
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
           MALGG APQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 19  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 78

Query: 61  GFIAFVAILHVMGKLYFVRREA 83
           GFIAFVAILHVMGKLYFVRREA
Sbjct: 79  GFIAFVAILHVMGKLYFVRREA 100

[Close]

BLAST of Carg24172 vs. NCBI nr
Match: XP_022146520.1 (protein transport protein Sec61 subunit beta-like [Momordica charantia] >XP_022924769.1 protein transport protein Sec61 subunit beta-like [Cucurbita moschata] >XP_022924770.1 protein transport protein Sec61 subunit beta-like [Cucurbita moschata] >XP_022980768.1 protein transport protein Sec61 subunit beta-like [Cucurbita maxima] >XP_023526368.1 protein transport protein Sec61 subunit beta-like [Cucurbita pepo subsp. pepo] >XP_038875266.1 protein transport protein Sec61 subunit beta-like isoform X2 [Benincasa hispida] >KAG6582719.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020688.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 1.7e-32
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGG APQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAILHVMGKLYFVRREA 83
          GFIAFVAILHVMGKLYFVRREA
Sbjct: 61 GFIAFVAILHVMGKLYFVRREA 82

[Close]

BLAST of Carg24172 vs. NCBI nr
Match: KAB1225231.1 (Protein transport protein Sec61 subunit beta [Morella rubra])

HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGG APQRGSAAATASMRRRRTTSSG SGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGPAPQRGSAAATASMRRRRTTSSGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAILHVMGKLYFVRREA 83
          GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61 GFIAFVAVLHVMGKLYFVRREA 82

[Close]

BLAST of Carg24172 vs. ExPASy Swiss-Prot
Match: P38389 (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=At2g45070 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-27
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 3  LGGGAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVM 62
          +G GAPQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2  VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61

Query: 63 SIGFIAFVAILHVMGKLYFVR 80
          SIGFIAFVA+LHVMGKLYFV+
Sbjct: 62 SIGFIAFVAVLHVMGKLYFVK 82

[Close]

BLAST of Carg24172 vs. ExPASy Swiss-Prot
Match: A8I6P9 (Protein transport protein Sec61 subunit beta OS=Chlamydomonas reinhardtii OX=3055 GN=SEC61B PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-08
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSG--GAAGTMLQFYTDDAPGLKISPNVVLVM 60
          +A GG +       A  ++RRR    SG SG   A    + FYTDD PG K+SP VV+ M
Sbjct: 12 VARGGRSSSNAPTGAAGALRRRPVRGSGGSGTTKAQQAAMNFYTDDTPGWKMSPVVVITM 71

Query: 61 SIGFIAFVAILHVMGK 75
          S+ FIAFV ILHV+GK
Sbjct: 72 SLSFIAFVTILHVVGK 87

[Close]

BLAST of Carg24172 vs. ExPASy Swiss-Prot
Match: Q9HFC7 (Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=SBH1 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.9e-07
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 15 ATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK 74
          A AS R   T S G +GG++ TML+ YTD++ GLK+ P VV+V+S+GFI  V  LH++ K
Sbjct: 26 AKASQRPTSTRSVG-AGGSSSTMLKLYTDESQGLKVDPVVVMVLSLGFIFSVVALHILAK 85

Query: 75 L 76
          +
Sbjct: 86 V 85

[Close]

BLAST of Carg24172 vs. ExPASy Swiss-Prot
Match: P60467 (Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 GN=SEC61B PE=1 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 6.4e-06
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 5  GGAPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVL 64
          G +P +  A  AA +++R+R+  S G      T+    G M +FYT+D+PGLK+ P  VL
Sbjct: 15 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 74

Query: 65 VMSIGFIAFVAILHVMGK 75
          VMS+ FIA V +LH+ GK
Sbjct: 75 VMSLLFIASVFMLHIWGK 92

[Close]

BLAST of Carg24172 vs. ExPASy Swiss-Prot
Match: P60468 (Protein transport protein Sec61 subunit beta OS=Homo sapiens OX=9606 GN=SEC61B PE=1 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 6.4e-06
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 5  GGAPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVL 64
          G +P +  A  AA +++R+R+  S G      T+    G M +FYT+D+PGLK+ P  VL
Sbjct: 15 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 74

Query: 65 VMSIGFIAFVAILHVMGK 75
          VMS+ FIA V +LH+ GK
Sbjct: 75 VMSLLFIASVFMLHIWGK 92

[Close]

BLAST of Carg24172 vs. ExPASy TrEMBL
Match: A0A6J1IH25 (Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111472887 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.7e-33
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAILHVMGKLYFVRREA 83
          GFIAFVAILHVMGKLYFVRREA
Sbjct: 61 GFIAFVAILHVMGKLYFVRREA 82

[Close]

BLAST of Carg24172 vs. ExPASy TrEMBL
Match: A0A6J1GEY3 (Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111453574 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.7e-33
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAILHVMGKLYFVRREA 83
          GFIAFVAILHVMGKLYFVRREA
Sbjct: 61 GFIAFVAILHVMGKLYFVRREA 82

[Close]

BLAST of Carg24172 vs. ExPASy TrEMBL
Match: A0A0A0L6Y8 (Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_3G117430 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.4e-33
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGGG PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAILHVMGKLYFVRREA 83
          GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61 GFIAFVAVLHVMGKLYFVRREA 82

[Close]

BLAST of Carg24172 vs. ExPASy TrEMBL
Match: A0A6J1EFZ9 (Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111432170 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.3e-33
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGG APQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAILHVMGKLYFVRREA 83
          GFIAFVAILHVMGKLYFVRREA
Sbjct: 61 GFIAFVAILHVMGKLYFVRREA 82

[Close]

BLAST of Carg24172 vs. ExPASy TrEMBL
Match: A0A6J1J088 (Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111480059 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.3e-33
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60
          MALGG APQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1  MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 61 GFIAFVAILHVMGKLYFVRREA 83
          GFIAFVAILHVMGKLYFVRREA
Sbjct: 61 GFIAFVAILHVMGKLYFVRREA 82

[Close]

BLAST of Carg24172 vs. TAIR 10
Match: AT2G45070.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-28
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 3  LGGGAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVM 62
          +G GAPQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2  VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61

Query: 63 SIGFIAFVAILHVMGKLYFVR 80
          SIGFIAFVA+LHVMGKLYFV+
Sbjct: 62 SIGFIAFVAVLHVMGKLYFVK 82

[Close]

BLAST of Carg24172 vs. TAIR 10
Match: AT2G45070.2 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-28
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 3  LGGGAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVM 62
          +G GAPQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2  VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61

Query: 63 SIGFIAFVAILHVMGKLYFVR 80
          SIGFIAFVA+LHVMGKLYFV+
Sbjct: 62 SIGFIAFVAVLHVMGKLYFVK 82

[Close]

BLAST of Carg24172 vs. TAIR 10
Match: AT2G45070.3 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-28
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 3  LGGGAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVM 62
          +G GAPQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2  VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61

Query: 63 SIGFIAFVAILHVMGKLYFVR 80
          SIGFIAFVA+LHVMGKLYFV+
Sbjct: 62 SIGFIAFVAVLHVMGKLYFVK 82

[Close]

BLAST of Carg24172 vs. TAIR 10
Match: AT2G45070.4 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-28
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 3  LGGGAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVM 62
          +G GAPQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2  VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61

Query: 63 SIGFIAFVAILHVMGKLYFVR 80
          SIGFIAFVA+LHVMGKLYFV+
Sbjct: 62 SIGFIAFVAVLHVMGKLYFVK 82

[Close]

BLAST of Carg24172 vs. TAIR 10
Match: AT3G60540.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 120.9 bits (302), Expect = 4.7e-28
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 3  LGGGAPQRGSAAATASMRRRRTT-SSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 62
          +GGGAPQRGSAAATASMRRR+    S ++GG AGTMLQFYTDDAPGLKISPNVVL+MSIG
Sbjct: 2  VGGGAPQRGSAAATASMRRRKPAGGSSSAGGGAGTMLQFYTDDAPGLKISPNVVLIMSIG 61

Query: 63 FIAFVAILHVMGKLYFVR 80
          FIAFVA+LHVMGKLYFV+
Sbjct: 62 FIAFVAVLHVMGKLYFVK 79

The following BLAST results are available for this feature:

BLAST of Carg24172 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950482.1	3.5e-33	100.00	protein transport protein Sec61 subunit beta-like [Cucurbita moschata] >XP_02297...	[more]
XP_011650635.1	1.3e-32	97.56	protein transport protein Sec61 subunit beta [Cucumis sativus]	[more]
XP_038875187.1	1.7e-32	98.78	protein transport protein Sec61 subunit beta-like isoform X1 [Benincasa hispida]	[more]
XP_022146520.1	1.7e-32	98.78	protein transport protein Sec61 subunit beta-like [Momordica charantia] >XP_0229...	[more]
KAB1225231.1	1.5e-31	96.34	Protein transport protein Sec61 subunit beta [Morella rubra]	[more]

BLAST of Carg24172 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38389	2.3e-27	82.72	Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=...	[more]
A8I6P9	1.4e-08	48.68	Protein transport protein Sec61 subunit beta OS=Chlamydomonas reinhardtii OX=305...	[more]
Q9HFC7	9.9e-07	49.18	Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB...	[more]
P60467	6.4e-06	43.59	Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 G...	[more]
P60468	6.4e-06	43.59	Protein transport protein Sec61 subunit beta OS=Homo sapiens OX=9606 GN=SEC61B P...	[more]

BLAST of Carg24172 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IH25	1.7e-33	100.00	Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GEY3	1.7e-33	100.00	Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A0A0L6Y8	6.4e-33	97.56	Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_3...	[more]
A0A6J1EFZ9	8.3e-33	98.78	Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1J088	8.3e-33	98.78	Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Carg24172 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45070.1	1.6e-28	82.72	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.2	1.6e-28	82.72	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.3	1.6e-28	82.72	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.4	1.6e-28	82.72	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT3G60540.1	4.7e-28	83.33	Preprotein translocase Sec, Sec61-beta subunit protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030671	Protein transport Sec61-beta/Sbh	PIRSF	PIRSF006398	Sec61_beta	coord: 2..80 e-value: 1.6E-26 score: 90.5
IPR030671	Protein transport Sec61-beta/Sbh	PANTHER	PTHR13509	SEC61 SUBUNIT BETA	coord: 1..82
IPR016482	Protein transport protein SecG/Sec61-beta/Sbh	PFAM	PF03911	Sec61_beta	coord: 34..73 e-value: 2.2E-18 score: 66.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR13509:SF2	PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24172-RA	Carg24172-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031204	posttranslational protein targeting to membrane, translocation
biological_process	GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005784	Sec61 translocon complex