Carg24161 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTACAACCTTTTCTTTCACGTCTTTTCCTACTAAAAAAAAAAAGAAAAAAAAAATGAGCATCTCCGATATCGACGCCGTACCCAACGGCCACTCGGAGGCGCCGGAGTTTTACCAAAACGTCGTCGTTATGCGTCACGGCGATCGCTTCGACAACTTCGAACGCTCATGGACGGCCACTGCATCCCGCCCGTGGGACCCGCCCCTTTACAAGGACGGCTTGGTTCGAGCCTTCGATACGGGTCGGACTTTTCTCGACCTTCTCGGGTTTCCTTTTCACCGGGTTTTCGTTTCCCCTTTCCTCCGCTGCGTCCAGACCGCCGCCCAAGTCATCGAAGCCCTGTCTGACGGCGCCGACAGCAACCCTTCCAGTCCTAAGGTCAGGCAAATTTCCCGATACACATGAAACCATCACATCAAATTGTGTTTTATTTTTGTTTATCGGTGGTTGACTTTTCTTTCTCCTCAAGTTATGGTTCTAGAAATTTACGAAATTGTTTGTGGGTTTTGAATGTTTGTTTGAGGGATTTGATGGGTCATTTCTCATTTGGCATTTTCGGACATGGATTAATAACATTAACAATACTAATATGTTCTAATAAATAAGCTTCAAATTGAAGGCCATCTGGAATTGGGTGATAATTTGTCGTTTTGGAGGCCACCCAGTTCCAAACCTCTGCTATCTTCATTTTTCATTCTTAACTTAATATCTTTCAATTTTCATTGGTAACAGCCTAAGTCCGGATTGAAATTTAGCTAGCGATAGAGCTCCAAGCTCAAGCTCACTGCTAATGGATATTGTCTTTTTTGAGCTCTCCTTCCAGGGTCATACGGTCCTCTTTAGGCTTTCCCTCCAGTTTTAAAACGAGTCTCCTAGTAGGAGGTTTCGACGCCCTTATAAAGAGTGATGTGTGATCTCACAATCCACCCTTCTTGAAAACCCAATGTCCTCGCTGACACTCGTTTCTCTCTTTCAATTGACGTGGATCTCACAACCCCTTCAAGGCCCATTGTCTTTGTTGGCATACGGTTCAGTATCTAGCTTTAATATCAATTTTAACCGCCCAAGACCCCCAACGTCTTCGTTGGCACATCGTTCAATGTCTAGCTCTGATACCATTTGTAACAGCTTGAGCCTATTACTAACAGATATTATCGTCTTTGAACTTTTCTTTCTAGACTTCTCCAAAATTTTAAAACGTATGGCGGGGACTGGGAGAGGGGAATGACAGGTGTTTAAGAACTTATTTGAACACATAATATCACTTTTCAAACACTTGAAAGGCTATTCCAAATTAGCCATTAATTTGATTTGCTTATCTGGTCAAAAAGGCATCATGGTTTAGTTTTTGATTAGGTGAAAGACCCAACTGGGATCGCCCACAATACAAATAGTCATTGACATTGACAGATGAAGATGACATCTCCTTTGTTATATAGCTAGCCTGCAGTATTATTTGAAAAAAGCGTTGAAAAGGTCTTCTCAACTTTTCAACACACAAGGATTTGTCTTTTGGTGCTCAAAAATTCATTTCAATACTTGCTAGCTGCTTCAAATGATCCTCTAATTGTCTTGCTTTTGAATGGTAAAACTTGTTGTGATCTGTTCAACGAGTTTAAAAGTCAAATTAGACGGTTAATGATGACTCTATGTAACGATTCAAGTCCACCGCTAGCAAATATTGTGTTCATTAGACTTTCCCTTTCAAGCTTCCTCTCAAGGTTTCTAAACCGCGTCTACTAGAGAGAGGTTTCCACACTCTTATGAGGAATGATTTGTTCTCATCTCCAACCGATGTAGGATCTCACAATCCACCCTCCTTAGAGGCCCAACGTTCTCGCTGGCACACCGCTCGGTGTCTAACTCTGATACCATTTATAACGGCTCAAGCCCACCACTAGTAGATATTGTCTTTCTTTCGGGCTTCCCCTCAAAGTTTTAAAACGTGTCTACTAGAGAGAGGTTTCTACACCCTTATAAAGAATGTTTCATTCTCCTCTCCACCCGACGTGGGACCTCAGAAATTAGTTTCACTTTTCTCAGTCTTCACTTGCTTTTATTTCGTCTTATAAATGATATGAACATTAGAACAAGTCTTGAGCTGAAAAGTATGACTCCAAAGTTGATTTCAGATTATGCACAAGTTTCTTTTTGTACAGTTCATCATTCAAATGCTGAATTTTGAGTTGGGATATCACTGTAGGTTTCAATAGAGTATGGACTGTGTGAGATGCTAACCAATGAAGCAATCAGGCCTAATGTTGAACCAAAGGATAGGAACTGGGATTTCGATATCCCTCAGCTTGAAGCCATTTTACCCGTCGGGACGGTTGACCATTCTATAGAACGTGTCTATAAAGAGGTACGTAAACAAAATCGTTATCAAACGAAGCTTCAACCCGTTTAAGTAAACAATATTTCTCAAAAACTTCAGATGCTTCCATGGGAAGGATCAGCAGCAGTTACTCATCGTCGGTACGTCCAACTATTCCATACGCTTGCCGATAAATACCCGACGGAGAACTTGCTACTTGTCACACATGGTAAGTAGTATTTTCGGTTGCTGCCATAACTCGTCCGTCGTCCTTATAGGTTGCCCTTATGACGTTGTTTGTTCATCGGTGTGCTTTTAGGCGAAGCGGTTGGAGTTGCAGTTTCGACGTTCATGGAAGATGTACTCGTATATGGAGTCGAGTACTGTGCATTTGTTCAGCTGCAAAGGCCTGTTTTTCGGAGAGGCGATTCGTATGTGTTCGGAAAATTTGAGGTGAAATTGAGAAATGATGGGAAAGATGGAATCAAACACATGCCAAAGCCAGAAAAAGAATGAGATCATCATATGTTTCATTGGGAATAAACTGCCAGACTCTTTCTATTATTTGCTTATGCTTTGATTCTGTGATGCAACTCTTTTTTTGTGTTTCTTTGAATAAATGAGTCTGGATTGTTGATTTTGTTATGAACAGTGATGATATGATACTGATTATTGTGAAGGAGAGTAAAAGAAAGTGATATGATACTCATTATTTCCCAAATGCGTATGTCTTAGTTCATGTTAATGTAACAATT ATTACAACCTTTTCTTTCACGTCTTTTCCTACTAAAAAAAAAAAGAAAAAAAAAATGAGCATCTCCGATATCGACGCCGTACCCAACGGCCACTCGGAGGCGCCGGAGTTTTACCAAAACGTCGTCGTTATGCGTCACGGCGATCGCTTCGACAACTTCGAACGCTCATGGACGGCCACTGCATCCCGCCCGTGGGACCCGCCCCTTTACAAGGACGGCTTGGTTCGAGCCTTCGATACGGGTCGGACTTTTCTCGACCTTCTCGGGTTTCCTTTTCACCGGGTTTTCGTTTCCCCTTTCCTCCGCTGCGTCCAGACCGCCGCCCAAGTCATCGAAGCCCTGTCTGACGGCGCCGACAGCAACCCTTCCAGTCCTAAGGTTTCAATAGAGTATGGACTGTGTGAGATGCTAACCAATGAAGCAATCAGGCCTAATGTTGAACCAAAGGATAGGAACTGGGATTTCGATATCCCTCAGCTTGAAGCCATTTTACCCGTCGGGACGGTTGACCATTCTATAGAACGTGTCTATAAAGAGATGCTTCCATGGGAAGGATCAGCAGCAGTTACTCATCGTCGGTACGTCCAACTATTCCATACGCTTGCCGATAAATACCCGACGGAGAACTTGCTACTTGTCACACATGGCGAAGCGGTTGGAGTTGCAGTTTCGACGTTCATGGAAGATGTACTCGTATATGGAGTCGAGTACTGTGCATTTGTTCAGCTGCAAAGGCCTGTTTTTCGGAGAGGCGATTCGTATGTGTTCGGAAAATTTGAGGTGAAATTGAGAAATGATGGGAAAGATGGAATCAAACACATGCCAAAGCCAGAAAAAGAATGAGATCATCATATGTTTCATTGGGAATAAACTGCCAGACTCTTTCTATTATTTGCTTATGCTTTGATTCTGTGATGCAACTCTTTTTTTGTGTTTCTTTGAATAAATGAGTCTGGATTGTTGATTTTGTTATGAACAGTGATGATATGATACTGATTATTGTGAAGGAGAGTAAAAGAAAGTGATATGATACTCATTATTTCCCAAATGCGTATGTCTTAGTTCATGTTAATGTAACAATT ATGAGCATCTCCGATATCGACGCCGTACCCAACGGCCACTCGGAGGCGCCGGAGTTTTACCAAAACGTCGTCGTTATGCGTCACGGCGATCGCTTCGACAACTTCGAACGCTCATGGACGGCCACTGCATCCCGCCCGTGGGACCCGCCCCTTTACAAGGACGGCTTGGTTCGAGCCTTCGATACGGGTCGGACTTTTCTCGACCTTCTCGGGTTTCCTTTTCACCGGGTTTTCGTTTCCCCTTTCCTCCGCTGCGTCCAGACCGCCGCCCAAGTCATCGAAGCCCTGTCTGACGGCGCCGACAGCAACCCTTCCAGTCCTAAGGTTTCAATAGAGTATGGACTGTGTGAGATGCTAACCAATGAAGCAATCAGGCCTAATGTTGAACCAAAGGATAGGAACTGGGATTTCGATATCCCTCAGCTTGAAGCCATTTTACCCGTCGGGACGGTTGACCATTCTATAGAACGTGTCTATAAAGAGATGCTTCCATGGGAAGGATCAGCAGCAGTTACTCATCGTCGGTACGTCCAACTATTCCATACGCTTGCCGATAAATACCCGACGGAGAACTTGCTACTTGTCACACATGGCGAAGCGGTTGGAGTTGCAGTTTCGACGTTCATGGAAGATGTACTCGTATATGGAGTCGAGTACTGTGCATTTGTTCAGCTGCAAAGGCCTGTTTTTCGGAGAGGCGATTCGTATGTGTTCGGAAAATTTGAGGTGAAATTGAGAAATGATGGGAAAGATGGAATCAAACACATGCCAAAGCCAGAAAAAGAATGA MSISDIDAVPNGHSEAPEFYQNVVVMRHGDRFDNFERSWTATASRPWDPPLYKDGLVRAFDTGRTFLDLLGFPFHRVFVSPFLRCVQTAAQVIEALSDGADSNPSSPKVSIEYGLCEMLTNEAIRPNVEPKDRNWDFDIPQLEAILPVGTVDHSIERVYKEMLPWEGSAAVTHRRYVQLFHTLADKYPTENLLLVTHGEAVGVAVSTFMEDVLVYGVEYCAFVQLQRPVFRRGDSYVFGKFEVKLRNDGKDGIKHMPKPEKE Homology
BLAST of Carg24161 vs. NCBI nr
Match: KAG6597036.1 (hypothetical protein SDJN03_10216, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028513.1 hypothetical protein SDJN02_09694 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 547.0 bits (1408), Expect = 9.0e-152 Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
BLAST of Carg24161 vs. NCBI nr
Match: XP_022944754.1 (uncharacterized protein LOC111449111 [Cucurbita moschata]) HSP 1 Score: 545.8 bits (1405), Expect = 2.0e-151 Identity = 261/262 (99.62%), Postives = 262/262 (100.00%), Query Frame = 0
BLAST of Carg24161 vs. NCBI nr
Match: XP_023540071.1 (uncharacterized protein LOC111800554 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 539.3 bits (1388), Expect = 1.9e-149 Identity = 258/262 (98.47%), Postives = 261/262 (99.62%), Query Frame = 0
BLAST of Carg24161 vs. NCBI nr
Match: XP_022975437.1 (ubiquitin-associated and SH3 domain-containing protein A-like [Cucurbita maxima] >XP_022975446.1 ubiquitin-associated and SH3 domain-containing protein A-like [Cucurbita maxima]) HSP 1 Score: 535.4 bits (1378), Expect = 2.7e-148 Identity = 257/262 (98.09%), Postives = 259/262 (98.85%), Query Frame = 0
BLAST of Carg24161 vs. NCBI nr
Match: XP_038882205.1 (uncharacterized protein LOC120073424 [Benincasa hispida]) HSP 1 Score: 432.6 bits (1111), Expect = 2.5e-117 Identity = 210/253 (83.00%), Postives = 232/253 (91.70%), Query Frame = 0
BLAST of Carg24161 vs. ExPASy Swiss-Prot
Match: Q3V3E1 (Ubiquitin-associated and SH3 domain-containing protein A OS=Mus musculus OX=10090 GN=Ubash3a PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.8e-07 Identity = 55/194 (28.35%), Postives = 84/194 (43.30%), Query Frame = 0
BLAST of Carg24161 vs. ExPASy Swiss-Prot
Match: P57075 (Ubiquitin-associated and SH3 domain-containing protein A OS=Homo sapiens OX=9606 GN=UBASH3A PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 3.1e-06 Identity = 55/219 (25.11%), Postives = 85/219 (38.81%), Query Frame = 0
BLAST of Carg24161 vs. ExPASy TrEMBL
Match: A0A6J1FYZ4 (uncharacterized protein LOC111449111 OS=Cucurbita moschata OX=3662 GN=LOC111449111 PE=4 SV=1) HSP 1 Score: 545.8 bits (1405), Expect = 9.7e-152 Identity = 261/262 (99.62%), Postives = 262/262 (100.00%), Query Frame = 0
BLAST of Carg24161 vs. ExPASy TrEMBL
Match: A0A6J1IE93 (ubiquitin-associated and SH3 domain-containing protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111474791 PE=4 SV=1) HSP 1 Score: 535.4 bits (1378), Expect = 1.3e-148 Identity = 257/262 (98.09%), Postives = 259/262 (98.85%), Query Frame = 0
BLAST of Carg24161 vs. ExPASy TrEMBL
Match: A0A5A7U5U0 (Phosphoglycerate mutase family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G00520 PE=4 SV=1) HSP 1 Score: 427.2 bits (1097), Expect = 5.1e-116 Identity = 209/258 (81.01%), Postives = 230/258 (89.15%), Query Frame = 0
BLAST of Carg24161 vs. ExPASy TrEMBL
Match: A0A1S3AV13 (uncharacterized protein LOC103483134 OS=Cucumis melo OX=3656 GN=LOC103483134 PE=4 SV=1) HSP 1 Score: 427.2 bits (1097), Expect = 5.1e-116 Identity = 209/258 (81.01%), Postives = 230/258 (89.15%), Query Frame = 0
BLAST of Carg24161 vs. ExPASy TrEMBL
Match: A0A0A0L5Q1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118040 PE=4 SV=1) HSP 1 Score: 412.1 bits (1058), Expect = 1.7e-111 Identity = 200/258 (77.52%), Postives = 229/258 (88.76%), Query Frame = 0
BLAST of Carg24161 vs. TAIR 10
Match: AT3G60450.1 (Phosphoglycerate mutase family protein ) HSP 1 Score: 260.8 bits (665), Expect = 1.2e-69 Identity = 130/258 (50.39%), Postives = 165/258 (63.95%), Query Frame = 0
BLAST of Carg24161 vs. TAIR 10
Match: AT3G60440.1 (Phosphoglycerate mutase family protein ) HSP 1 Score: 245.4 bits (625), Expect = 5.2e-65 Identity = 128/255 (50.20%), Postives = 167/255 (65.49%), Query Frame = 0
BLAST of Carg24161 vs. TAIR 10
Match: AT3G60420.3 (Phosphoglycerate mutase family protein ) HSP 1 Score: 240.4 bits (612), Expect = 1.7e-63 Identity = 125/244 (51.23%), Postives = 162/244 (66.39%), Query Frame = 0
BLAST of Carg24161 vs. TAIR 10
Match: AT3G60420.1 (Phosphoglycerate mutase family protein ) HSP 1 Score: 224.2 bits (570), Expect = 1.2e-58 Identity = 117/236 (49.58%), Postives = 150/236 (63.56%), Query Frame = 0
BLAST of Carg24161 vs. TAIR 10
Match: AT3G60420.2 (Phosphoglycerate mutase family protein ) HSP 1 Score: 206.8 bits (525), Expect = 2.1e-53 Identity = 131/342 (38.30%), Postives = 166/342 (48.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|