Carg24143 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24143
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr02: 1618489 .. 1620494 (+)
RNA-Seq ExpressionCarg24143
SyntenyCarg24143
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAACGACTATGGTGGAGCAAAGGACCGAGGCTTCTAGATCAACGAAAGAAGGAGAGGAAGCGAAACAGAAGAAAGCTGTGGTTTGGGAACCAATCATCGTCTCTTGCTCTATCGGAAGGCTGAAGCCGGGATTCGTGGTCGTAAAGTAAGGCTTGGTCTGTATATTCTTTCTGCATCTGGATGTTAGGGAGGCATTATTTAAGTAGATTTGGGAGGGCAATGCGTTCTCAGTTACATTTAGGGTTGCGCGGTTCTTGTTTCCCCTTCGTAGTCGCGATTGCTCATAATCCCTTTCACTTCATCGGGCTACCAAATATTGTCCTTTTAATATTGTCCTTTTTGGGCATGCTTCCCCTCCAGGCTTTAAAACGCGTCTGCTAGAGGAAAGTTTCCCCACCCTTATAAATGGTGGTTTAGGTTTCCACACCACACCCTTATAAATGATGGTTGGTTTAGGTTTCCACACCACACCCTTGTAAATGGTGGTTTGTTCTCCTCCCCAACCAATGTCTGGCTCCTAGGAAACGTAAAGGTGTGGAAACTCTCCCTAGCATTTGCATTTTAAAAACCTTGAAGGGAAAGCTGAAAGAGGACAATACCGGCTAGCGGTGGGTTTCGGCGGTTACGAATGGTATCAGAGCTAGACACCAAGTAGTGTGTCAGCACACTGAGTCCCAAGGGGGTGGACACCGGGCGGTGCATAGAGAGGACACTAGAGCTAGAAGGGGGTAGATTGTGAGATCCCACGTCGGTTGGAGAGCGAATCGAATGTTGTTTACAAGGGTGTGAAAATCGCATGTCTTCTTTAATTATAGAGATCAAAATTAGCGAAAGCCAAAGGGACAATACCAAAATAGCATTTAAACCTTTAAAACTCAAAGACTCATACAAATTTCATACTATACTAATCGTCTCTGTTTGTTTGACAATATCCATTGATTTCTGTAATACACTTGGATTTTGTTATGAACTGAAGTTGCAGGAAATGAGGATTCGAATGTCTACTTCTATGACTACGAGTTCTATGATTCGACACGAGCTAAACATACTTGTGCGAACTAGCTACAGATTCTCTCTAAGGTAAAACCATTAGTTGACAGTTTGTTGTCGATTCACCGGCACGTATGTGCCTCTGCAGGGCCACTGGTTTCCGGTCACCGGGGTTGCCTGCAACCATGGGGAGAATCTGTTGGCTTCCTTGGATGTTTATGGGAGGGTAATTGTACGAGATCAAAGATGAGCTAGAACTTAGAATGATATATATGTGGGAATAGATTTCTGAATAGCTCTGTTTGCTTCCTCTTATCAACTTCAGATCATCATTCAGTATGAAAATTGATTGACAAAGAGAAAACAGGAGTTTCTTATATATACTTCCATCCATTTTCTACCAGTAGTTGATGATATGAAAGTTCATGATGAGTTCAACTATGAGACAAACTCGGGCAAAGTTTTTATTCATATTTACCAAGTGATATAGGTTATCATTAACAAGCAGAAGAAAATGATAACTCCTAACAAAATCTAAACCAGCCTACTGTATCTTCCAAGGACAAAAAAGCTTGAAATATGTTGATATGATATGCTTTCCTAGAAACTAAGTAAAATAAAGATTTAAGTATTTGCATCCAATTCTACTCTACCTTGTTTGATATGTACTCAAGAGCCATAAATCTATCTAATTTACGTGTTCTATGTGGTTACCCGATGTTGACAGACAACTTCAGCAGATAGTTTTTTGCTTAGATTTGGACATGGATCGCCTCCGAAGATGCTCGTTGGTACGGTTGCCAGGCATCTCTGTCGACCAACACATAGCTGGAAAAGACGGTATAAATTAGGAACTTAGTATTGTAGTTTGAAGTTTTGATCTTGTCGATTACAGATCAATCATCAAGACAATATTTGAAAAGGTTGGTTATATATTGATGTAAATTGAGATACCTTTTGCAACACAGATCGTGAATTTGGAAAATGACAGGTTCCTTGCTGAAGATTTCCA

mRNA sequence

ATGTTAACGACTATGGTGGAGCAAAGGACCGAGGCTTCTAGATCAACGAAAGAAGGAGAGGAAGCGAAACAGAAGAAAGCTGTGGTTTGGGAACCAATCATCGTCTCTTGCTCTATCGGAAGGCTGAAGCCGGGATTCGTGGTCGTAAAGGCCACTGGTTTCCGGTCACCGGGGTTGCCTGCAACCATGGGGAGAATCTGTTGGCTTCCTTGGATGTTTATGGGAGGACAACTTCAGCAGATAGTTTTTTGCTTAGATTTGGACATGGATCGCCTCCGAAGATGCTCGTTGGTACGGTTGCCAGGCATCTCTGTCGACCAACACATAGCTGGAAAAGACGGTATAAATTAGGAACTTAGTATTGTAGTTTGAAGTTTTGATCTTGTCGATTACAGATCAATCATCAAGACAATATTTGAAAAGGTTCCTTGCTGAAGATTTCCA

Coding sequence (CDS)

ATGTTAACGACTATGGTGGAGCAAAGGACCGAGGCTTCTAGATCAACGAAAGAAGGAGAGGAAGCGAAACAGAAGAAAGCTGTGGTTTGGGAACCAATCATCGTCTCTTGCTCTATCGGAAGGCTGAAGCCGGGATTCGTGGTCGTAAAGGCCACTGGTTTCCGGTCACCGGGGTTGCCTGCAACCATGGGGAGAATCTGTTGGCTTCCTTGGATGTTTATGGGAGGACAACTTCAGCAGATAGTTTTTTGCTTAGATTTGGACATGGATCGCCTCCGAAGATGCTCGTTGGTACGGTTGCCAGGCATCTCTGTCGACCAACACATAGCTGGAAAAGACGGTATAAATTAG

Protein sequence

MLTTMVEQRTEASRSTKEGEEAKQKKAVVWEPIIVSCSIGRLKPGFVVVKATGFRSPGLPATMGRICWLPWMFMGGQLQQIVFCLDLDMDRLRRCSLVRLPGISVDQHIAGKDGIN
Homology
[Close]
BLAST of Carg24143 vs. NCBI nr
Match: KAG7035066.1 (hypothetical protein SDJN02_01861, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.0 bits (606), Expect = 4.0e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MLTTMVEQRTEASRSTKEGEEAKQKKAVVWEPIIVSCSIGRLKPGFVVVKATGFRSPGLP 60
           MLTTMVEQRTEASRSTKEGEEAKQKKAVVWEPIIVSCSIGRLKPGFVVVKATGFRSPGLP
Sbjct: 1   MLTTMVEQRTEASRSTKEGEEAKQKKAVVWEPIIVSCSIGRLKPGFVVVKATGFRSPGLP 60

Query: 61  ATMGRICWLPWMFMGGQLQQIVFCLDLDMDRLRRCSLVRLPGISVDQHIAGKDGIN 117
           ATMGRICWLPWMFMGGQLQQIVFCLDLDMDRLRRCSLVRLPGISVDQHIAGKDGIN
Sbjct: 61  ATMGRICWLPWMFMGGQLQQIVFCLDLDMDRLRRCSLVRLPGISVDQHIAGKDGIN 116

The following BLAST results are available for this feature:
BLAST of Carg24143 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035066.14.0e-59100.00hypothetical protein SDJN02_01861, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg24143 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24143 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24143 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24143-RACarg24143-RAmRNA