Carg24130 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24130
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr09: 11583082 .. 11586609 (+)
RNA-Seq Expression	Carg24130
Synteny	Carg24130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGAAAGAGGCAATATTTACCTAAGCCAAAGCCAAGAGGATTAGATGAGTCCTCGCTCAGAGATGAAATTCGAGATATGGTTTGCTATCATATCAGGACGAACAAACTCGAAAAGAAGTTGTATGAGGTCGAGGCTAAGTTACATGAAGCTCAATCTAAGCTATTGATTGCTATCATATCAGGATGAACAAACTCGAGAGGAAGTATGAGGTCAAGGCTAAGTTGCATGAAGCTCAATCTAAGATATCGATTGCTATCATATTAGGATGAATAAACTCGAAAGAAGTTGTATGAGGTCGAGGCTAAGTTACATGAAGCTCAATCTAAGCTATCAAATGCCATTTTTTGTATGCCTTCATCGAGATGGAAGATGAGGAGTTGAAGTAGCTACCAATGTTCTAAGGGTGGAGGCACCCAAATATAAACTTCAGCTTCATTCAATCTCGTCTTAGCTTCGGGTGAGATGCTAATTGTAGCCTTCGAACACATTGTCAGGTGCCCCGAACCTCTCGAACTCCTTAATACCCCTTGTCTTAATTAGTTGCGATTCCAAAAGTTTTGTGCAAGATTTGGTTGTAAAGCATTAACTTTCCTCTCATCGATTGAGTTTAAGCTTTCATTCGGTTGAGTTGTCTTTCAGTTTTAGATATTGAGCCATGACAAAGAAAAGTATTTGAAGAGATGATTGTGAGATTCCACATCGATTGGGGAAGAGAACGAAACATTATTTAATAAGAGTGTGGAAACCTCTCCTGAGCATATGCATTTTAAAACTGTGAGGTTGACGGTAATACGTAATGGGCCAAAGATGGGCTTGGACTGTTACAAATGGTATTAGAGGCAGTCATCGGGCAGTTTGCCAACGAGGATGTTATGCCTCGAAGGGGGTTGGACACTGGAAGGAAACCTCTCTTGAGGGGAAGCTCGAAAGGAAAAGTCCAAAAAAGGCGATATTTGCTAGCGGTAGACTTGAGCTGTTACAAGACAAATATAAGCCAAATGCTTTTCGGCTATGAACCGCGCAAACTGATGGGTCGGTGTTTAGAAAGCCTTAGAGATAGTTCAAAGGAAGGAAGAAGAAAGGACCGATCAGCTAGATTTCTTTCTCCATTGAGCTTGATTTTAGCCTCGTACCAAGTTGTACTTCAAGAGTGTTAGAATTGAAGATGGCTCCACGTCCTAGCAAGTAATGGGAGACCTACACTTATCCAAATCCATCATAAGCTTGACCTCTCCTATGTCCTAACAAGCTCTCAAGCTTGACCTCAACTATGTCCTAACAAGCTCTCAAGCTTGACCTCAACTATGTCCTAACAAGCTCTCAAGCTTGACCTCTCCTATGCTCAGAGAAGTTTCACAACTAGTCGTATGAGCTATATCGATGGCTTACCACTCTCTTTCACTAACTCTTTGGATTTTCTAGAGTTGTCCAGTATCATGTTTTATGTAATGACGTTTTGTGTAATGACTATACTTTTCTTGTAACGCTGCTATATACGTGATGTAATTACTATGTGCGAAAAATCATTAAATTCATTTCACTTTAAACATTACTAATTCAAACCTAATAATACCATTGAAAATAGAAACAACATCTCCTTTGAAAGTTTAAAAATAAAAATATCATTGATCTACTCTAATATAATGACTACGATTTAAGCCGAAAACCTAATTATCGATACTTGATGTTGTCAATCCATACATGGGGTCTTTGCCTTTACCGGGAAAAATGTTAAACATATGTTGAGTATTTAAAAATACCCCGTAAATGACCCCACTGTTGGGATCGAAAAATGCAATCATATGCAACAAGCTGTCGTGTGAAACTCTACTTTTCTTATATTTCCTTTGACCTTACCTTTTTTTGATGTATCTCTACATCTCATATAAGTGGGGTTTCTTGACTTACTAGTGACAAATGTTAAACATATGTTGAGTATTTAAAAATACCCCGTAAATGACCTTACTTTCTTGACTATTCCTTTGACCTTACTTTCTTTTTTGGATAAGGTTGGATCTATAGTATTTTTTCTACATCTATATTCGTGGGACTTACAAATATATAGTATCTTTAATTATATATTAATGCGTCTAAAATAAGTCTTACATTGACATGAGCATTTTTACTTTCTTTAGTAGCATTAAACACATAACGCTATGTGAATTAACATGAATGCAAGAAAATTCAAAATGTAAGAGTACAGTCATGAGGTATCATTTAATTCTTATCAATAAATAGTATAAATGTTAATTAGTGAGTATCAGGAAAAAGGTTATATTAACCCACACCACCTCAAAAATAGAGAAGTATAACAATTAGCGGTGTTTCTGAAATAAATGGGCCCTACCCATAACCTGGTGGAAAAGAATAGACTATCGAGTGTTATCACCTATGAATTTTATAGGACACCAAAGAATACACTACCTACAGGGGGTATATTAGAGAATGCATTATATAACTATTTATCGGGATTACCATTGTTATCAATTAATCCAATCACAGTAAAACAGAGAAGCACATCACAAAGGTCCTTACGCTAACTAAATCTCTTTTGAATATGGGTATAGGTACGATTATGCCTCAAACCCTCCTCGCATAGCCTCATTGGAGAAAGTTATATAGCATACACAAAAAAAAAATCTTACTACTATGTTGTCTTGACTTGTGATATTGATATGTTGTATAAATCGCGCGTCAAATTCTGCTCAAAAAGCGTTGGGTCTTGTAATGAAGAGCTGCGACTTGGATCCTATCTGACTCTTTGTCTAGTAGCTGACTACAAGAGAATTCAATGCAATCCTTTTGCAAATAATTGAGGAGACAATGTGTGTATATCGGCCATCGGCTTGAAGCACAGAAAAGACGTATTGGGATGTGGTTCTTATATCACTCTATATATATCTCGTTTATATCGGTTTATAGGGACTTTCATCTCTTATTAATGTTATCAAATACATATCTACCTCATGGCCTCTCGCTCATACGGATGTATAATCGCCTCACAGTGGATTTAACTCAACTTTAAGCACAGAACGTTAGAGAGCCAATTTCAGTAACGCTTGAGACGGTAATGACTATAGACCACGACCGCACTTAGTAATTCGGATTAAAGTACCCATATATACACTCTTAGGTTACTTAATATGTTTGATTCATTTGTTGAATGAAGTTTTTACACGCAAAAATCCACAAAGCATGTCCGCTACTAAATGTGGGAGCACTGAAGAACAAAATGAGTCACACTTACATTTCATGGTAATACTCATTTGATCAACTTAATATATAGTATAGGCCTTATTTCATTAGTTGAGTTATGATAGTTTATGGAATATTCTCGTCTAGGTAATGAAGACTTTTATGTTTCAGGTATAAGATTTTATATCACAGGTTTCTCATTAGGGATACATCTTTGCAATCTCAGGGACGATACTTTTTTCTCTACACTTCTTTCTTTTCAGGTTGCATTCTCTTACAAGTAGCTATTGTGACAACGCATCACGAGCATGGCTTGGTTATCGATAA

mRNA sequence

ATGGCTGGAAAGAGGCAATATTTACCTAAGCCAAAGCCAAGAGGATTAGATGAGTCCTCGCTCAGAGATGAAATTCGAGATATGGTTTGCTATCATATCAGGACGAACAAACTCGAAAAGAAGTTGTATGAGGTCGAGGCTAAGTTGCATTCTCTTACAAGTAGCTATTGTGACAACGCATCACGAGCATGGCTTGGTTATCGATAA

Coding sequence (CDS)

ATGGCTGGAAAGAGGCAATATTTACCTAAGCCAAAGCCAAGAGGATTAGATGAGTCCTCGCTCAGAGATGAAATTCGAGATATGGTTTGCTATCATATCAGGACGAACAAACTCGAAAAGAAGTTGTATGAGGTCGAGGCTAAGTTGCATTCTCTTACAAGTAGCTATTGTGACAACGCATCACGAGCATGGCTTGGTTATCGATAA

Protein sequence

MAGKRQYLPKPKPRGLDESSLRDEIRDMVCYHIRTNKLEKKLYEVEAKLHSLTSSYCDNASRAWLGYR

Homology

[Close]

BLAST of Carg24130 vs. NCBI nr
Match: KAG7025170.1 (hypothetical protein SDJN02_13993, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 3.5e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MAGKRQYLPKPKPRGLDESSLRDEIRDMVCYHIRTNKLEKKLYEVEAKLHSLTSSYCDNA 60
          MAGKRQYLPKPKPRGLDESSLRDEIRDMVCYHIRTNKLEKKLYEVEAKLHSLTSSYCDNA
Sbjct: 1  MAGKRQYLPKPKPRGLDESSLRDEIRDMVCYHIRTNKLEKKLYEVEAKLHSLTSSYCDNA 60

Query: 61 SRAWLGYR 69
          SRAWLGYR
Sbjct: 61 SRAWLGYR 68

The following BLAST results are available for this feature:

BLAST of Carg24130 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025170.1	3.5e-31	100.00	hypothetical protein SDJN02_13993, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg24130 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24130 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24130 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24130-RA	Carg24130-RA	mRNA