Carg24130 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24130
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 11583082 .. 11586609 (+)
RNA-Seq ExpressionCarg24130
SyntenyCarg24130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGAAAGAGGCAATATTTACCTAAGCCAAAGCCAAGAGGATTAGATGAGTCCTCGCTCAGAGATGAAATTCGAGATATGGTTTGCTATCATATCAGGACGAACAAACTCGAAAAGAAGTTGTATGAGGTCGAGGCTAAGTTACATGAAGCTCAATCTAAGCTATTGATTGCTATCATATCAGGATGAACAAACTCGAGAGGAAGTATGAGGTCAAGGCTAAGTTGCATGAAGCTCAATCTAAGATATCGATTGCTATCATATTAGGATGAATAAACTCGAAAGAAGTTGTATGAGGTCGAGGCTAAGTTACATGAAGCTCAATCTAAGCTATCAAATGCCATTTTTTGTATGCCTTCATCGAGATGGAAGATGAGGAGTTGAAGTAGCTACCAATGTTCTAAGGGTGGAGGCACCCAAATATAAACTTCAGCTTCATTCAATCTCGTCTTAGCTTCGGGTGAGATGCTAATTGTAGCCTTCGAACACATTGTCAGGTGCCCCGAACCTCTCGAACTCCTTAATACCCCTTGTCTTAATTAGTTGCGATTCCAAAAGTTTTGTGCAAGATTTGGTTGTAAAGCATTAACTTTCCTCTCATCGATTGAGTTTAAGCTTTCATTCGGTTGAGTTGTCTTTCAGTTTTAGATATTGAGCCATGACAAAGAAAAGTATTTGAAGAGATGATTGTGAGATTCCACATCGATTGGGGAAGAGAACGAAACATTATTTAATAAGAGTGTGGAAACCTCTCCTGAGCATATGCATTTTAAAACTGTGAGGTTGACGGTAATACGTAATGGGCCAAAGATGGGCTTGGACTGTTACAAATGGTATTAGAGGCAGTCATCGGGCAGTTTGCCAACGAGGATGTTATGCCTCGAAGGGGGTTGGACACTGGAAGGAAACCTCTCTTGAGGGGAAGCTCGAAAGGAAAAGTCCAAAAAAGGCGATATTTGCTAGCGGTAGACTTGAGCTGTTACAAGACAAATATAAGCCAAATGCTTTTCGGCTATGAACCGCGCAAACTGATGGGTCGGTGTTTAGAAAGCCTTAGAGATAGTTCAAAGGAAGGAAGAAGAAAGGACCGATCAGCTAGATTTCTTTCTCCATTGAGCTTGATTTTAGCCTCGTACCAAGTTGTACTTCAAGAGTGTTAGAATTGAAGATGGCTCCACGTCCTAGCAAGTAATGGGAGACCTACACTTATCCAAATCCATCATAAGCTTGACCTCTCCTATGTCCTAACAAGCTCTCAAGCTTGACCTCAACTATGTCCTAACAAGCTCTCAAGCTTGACCTCAACTATGTCCTAACAAGCTCTCAAGCTTGACCTCTCCTATGCTCAGAGAAGTTTCACAACTAGTCGTATGAGCTATATCGATGGCTTACCACTCTCTTTCACTAACTCTTTGGATTTTCTAGAGTTGTCCAGTATCATGTTTTATGTAATGACGTTTTGTGTAATGACTATACTTTTCTTGTAACGCTGCTATATACGTGATGTAATTACTATGTGCGAAAAATCATTAAATTCATTTCACTTTAAACATTACTAATTCAAACCTAATAATACCATTGAAAATAGAAACAACATCTCCTTTGAAAGTTTAAAAATAAAAATATCATTGATCTACTCTAATATAATGACTACGATTTAAGCCGAAAACCTAATTATCGATACTTGATGTTGTCAATCCATACATGGGGTCTTTGCCTTTACCGGGAAAAATGTTAAACATATGTTGAGTATTTAAAAATACCCCGTAAATGACCCCACTGTTGGGATCGAAAAATGCAATCATATGCAACAAGCTGTCGTGTGAAACTCTACTTTTCTTATATTTCCTTTGACCTTACCTTTTTTTGATGTATCTCTACATCTCATATAAGTGGGGTTTCTTGACTTACTAGTGACAAATGTTAAACATATGTTGAGTATTTAAAAATACCCCGTAAATGACCTTACTTTCTTGACTATTCCTTTGACCTTACTTTCTTTTTTGGATAAGGTTGGATCTATAGTATTTTTTCTACATCTATATTCGTGGGACTTACAAATATATAGTATCTTTAATTATATATTAATGCGTCTAAAATAAGTCTTACATTGACATGAGCATTTTTACTTTCTTTAGTAGCATTAAACACATAACGCTATGTGAATTAACATGAATGCAAGAAAATTCAAAATGTAAGAGTACAGTCATGAGGTATCATTTAATTCTTATCAATAAATAGTATAAATGTTAATTAGTGAGTATCAGGAAAAAGGTTATATTAACCCACACCACCTCAAAAATAGAGAAGTATAACAATTAGCGGTGTTTCTGAAATAAATGGGCCCTACCCATAACCTGGTGGAAAAGAATAGACTATCGAGTGTTATCACCTATGAATTTTATAGGACACCAAAGAATACACTACCTACAGGGGGTATATTAGAGAATGCATTATATAACTATTTATCGGGATTACCATTGTTATCAATTAATCCAATCACAGTAAAACAGAGAAGCACATCACAAAGGTCCTTACGCTAACTAAATCTCTTTTGAATATGGGTATAGGTACGATTATGCCTCAAACCCTCCTCGCATAGCCTCATTGGAGAAAGTTATATAGCATACACAAAAAAAAAATCTTACTACTATGTTGTCTTGACTTGTGATATTGATATGTTGTATAAATCGCGCGTCAAATTCTGCTCAAAAAGCGTTGGGTCTTGTAATGAAGAGCTGCGACTTGGATCCTATCTGACTCTTTGTCTAGTAGCTGACTACAAGAGAATTCAATGCAATCCTTTTGCAAATAATTGAGGAGACAATGTGTGTATATCGGCCATCGGCTTGAAGCACAGAAAAGACGTATTGGGATGTGGTTCTTATATCACTCTATATATATCTCGTTTATATCGGTTTATAGGGACTTTCATCTCTTATTAATGTTATCAAATACATATCTACCTCATGGCCTCTCGCTCATACGGATGTATAATCGCCTCACAGTGGATTTAACTCAACTTTAAGCACAGAACGTTAGAGAGCCAATTTCAGTAACGCTTGAGACGGTAATGACTATAGACCACGACCGCACTTAGTAATTCGGATTAAAGTACCCATATATACACTCTTAGGTTACTTAATATGTTTGATTCATTTGTTGAATGAAGTTTTTACACGCAAAAATCCACAAAGCATGTCCGCTACTAAATGTGGGAGCACTGAAGAACAAAATGAGTCACACTTACATTTCATGGTAATACTCATTTGATCAACTTAATATATAGTATAGGCCTTATTTCATTAGTTGAGTTATGATAGTTTATGGAATATTCTCGTCTAGGTAATGAAGACTTTTATGTTTCAGGTATAAGATTTTATATCACAGGTTTCTCATTAGGGATACATCTTTGCAATCTCAGGGACGATACTTTTTTCTCTACACTTCTTTCTTTTCAGGTTGCATTCTCTTACAAGTAGCTATTGTGACAACGCATCACGAGCATGGCTTGGTTATCGATAA

mRNA sequence

ATGGCTGGAAAGAGGCAATATTTACCTAAGCCAAAGCCAAGAGGATTAGATGAGTCCTCGCTCAGAGATGAAATTCGAGATATGGTTTGCTATCATATCAGGACGAACAAACTCGAAAAGAAGTTGTATGAGGTCGAGGCTAAGTTGCATTCTCTTACAAGTAGCTATTGTGACAACGCATCACGAGCATGGCTTGGTTATCGATAA

Coding sequence (CDS)

ATGGCTGGAAAGAGGCAATATTTACCTAAGCCAAAGCCAAGAGGATTAGATGAGTCCTCGCTCAGAGATGAAATTCGAGATATGGTTTGCTATCATATCAGGACGAACAAACTCGAAAAGAAGTTGTATGAGGTCGAGGCTAAGTTGCATTCTCTTACAAGTAGCTATTGTGACAACGCATCACGAGCATGGCTTGGTTATCGATAA

Protein sequence

MAGKRQYLPKPKPRGLDESSLRDEIRDMVCYHIRTNKLEKKLYEVEAKLHSLTSSYCDNASRAWLGYR
Homology
[Close]
BLAST of Carg24130 vs. NCBI nr
Match: KAG7025170.1 (hypothetical protein SDJN02_13993, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 3.5e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MAGKRQYLPKPKPRGLDESSLRDEIRDMVCYHIRTNKLEKKLYEVEAKLHSLTSSYCDNA 60
          MAGKRQYLPKPKPRGLDESSLRDEIRDMVCYHIRTNKLEKKLYEVEAKLHSLTSSYCDNA
Sbjct: 1  MAGKRQYLPKPKPRGLDESSLRDEIRDMVCYHIRTNKLEKKLYEVEAKLHSLTSSYCDNA 60

Query: 61 SRAWLGYR 69
          SRAWLGYR
Sbjct: 61 SRAWLGYR 68

The following BLAST results are available for this feature:
BLAST of Carg24130 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025170.13.5e-31100.00hypothetical protein SDJN02_13993, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg24130 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24130 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24130 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24130-RACarg24130-RAmRNA