Carg24099 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg24099
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 2003758 .. 2008766 (-)
RNA-Seq ExpressionCarg24099
SyntenyCarg24099
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGTGATCATCAGACCAAACAAACTAATTTCTAAATTTAGGCGGCACTCTCCGCTGCCGCAGTCTCCGGCTTCCGACGAAATCGCCGACCCCCTCTCCCCTCTCCGAGCAATCACAGTGGATCCAGCCCCTAACCCGCGTCGTTGATGAGATCGCGCCGCCGCCGCTCATTTTTCAGATTCTCGAGGTTTTATTTTTTGTTTTGTTGGGTTATGTTGGTTTATTTTCTTCCAGGAGAAAATTATGAACAATTTTTTTCTTGTTTTTTGTTGATTTCTTCTTCATTCAATGTTCAACTAGTCTAAATGAAAACATAAAACTAAGAATGTATACATCACAAATTAGTACCAAGAAAAAAAAAACAAAAAACAGATTGAATCAATCAATAAAAAGGAACAGTAAAACATGGAATCAATAATAGAGAGGAAATTTTGTTTAAGAAAATTTGTTAGGAATCATGACACTCCACCCTAATATGATATTGTTCACTTTGAGGATGTATTTCTTACTTATAAATGAATGATTATTCTCTTACTTAGCCAACGTGGAACTTTTTTCCTAATAATCCTCCCCTCAAACAAAATACACCATAGAGCCACCCCTTAGGCCTATGGAGCCCTCAAAAAACCTCCCGAGACTTAACTCTCTTTGGAGCTCTCGAACAAAGTACACCCATTTGTTCGACCCTTGAGTCACTTTTGACTACACCTTTGAGACTAGACTCAACTTTTTTGTTCGACACTTTGAGGATTCTATTGACATAGCTAAGTTAAGGATATGACTCTGATACCATGTTAGGAACCACACATCGACAATAGTATGATATTGTCCACTTTGAGTATAAGTTCTCATGGTTTTGCTTTTGGTTTTCCCAAAAGGCCTCGTACCATTGGAGATGTATTCCATACTTATAAACCCATGATCATCCCCTTAATTAGCCAATGTCAGACTCCTTCCCGACAATCCTCAACATGCTACCTTTTCGACTATATATGTAGATGAATTGCTGCAGGGAGTCATTTAATTTTCATATGAACTGCTGTAGAATTGTTAAATGTTCGATTAAATTCCTCTTAGAACGTTGCATTATATCATTATTTTGTGAAATGGTGTTGGCATTAACAAGAGTGATGAAATGCACTTTTGAATGTCAATTTGCATTGCATCATTATTTTACTGTTTATTGTTTGAAATTATTCATGGCCTGTTCTTTGTCTTCTCTTTTCAGAATTCCTGCATTCATGTATAAGAATCAGATTCAGCACTTGTTAGAGTTTTGATTGAAAGCTATGCCGCACCGAACACGACCTATGACTGCGCTTCTTGTATTTACTGGCTCAATGTTGTGCTAGTATCAACCATCACTCCAGTCTATGATTTCATATGCTTTCATCCATATTGGGAAAGAAGGGTATTTTCCAAAATCACTTGCAAGTTATTTGCATTGTTTTTTTGCTCGTGTATACAAGCTTGTTATACTTATGATAAATATGCATTGTTCTGTGTTTGGTGGCTATTCTCATTGCCATAGTTACTCTGTTTAGCTTTAAAAGTTGCAATGGAGAGGGATTGTTTAGTTTCTAGTTGAGAGATCTGGTGGAGGCTATCACTTGTTAGAGAATGTTATGGCTGTGGGACTGGATTTTCAATCGGAATATGTACGGTTGAGCACTCGGAGAGGGGGGACAATCCCACATTGGTTGGGGAGGAGAACGAAACACCCTTTGTAAAGGTGTGGAAACCTTCCCTTAGCAAATGCGTTTTAAAAACCTTGAGGGGAAGCCCGACGCCGGGCCATGTGCAAGTGAGGAGGTTGTTCCCCGAAACGGGGTAGACACGAGGCGGTGTGTGTAGTAAGGACGCTGGGCCCCGAAGGGGGTGGATTTAGTGAGGTCCCACATTGATTGGAGAAAGGAACGAGTGCCAGCGAGGACGCTGGGCCCTGAAGGGGGGTGGATTGTGAGATCCCACAATCCCACATTGGTTGGGGAGGAGAACAAAACACCCTTTATAAGAGTGTGGAAACCTTCCCCTAGCAAACGCATTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCTCAAAAAGGACAATATGTGCTAGCGGTGGGCTTGGACCGTTACACATATTGTGAGGTCCCACATCAGTTGGGGAGAAGAACGATTGTGAGATCCCATATCCCATATCGGTTGCGTGAGAAAACGAAACATTCTTTGTAAGGGTGTGAAAACCTCTCCCTAGCATACGTGTTTTAAAAACCTTGAGGGGAAGCTCAAAAGGGAAAGCCCAAAGAGGACAACATCTACTAGCAGTGAGCTTGGACCGTTACACATATGAAGGGCCGATGTTCTTTAAAGCTTGACTATGTATTCTATTTTTTGCTCTATCCACTTGGATAATCAATTACTATCAGGCAACAATTACTTGATGGGGCCATTGTGTTGCATTTTTTGTAAAAGAACAACGAAGGATCTTGATGATACTCTTTTAGTTTAGTGGGTAGGTCATGTATTACCTTTACTGAGGTTGAAGATTTGGTCTCCTACTTCATTTGTTGAACTCAAAAACAAAAAATAAGATTCATCAAGGAACATTAAAGGCATTAAATTAAAGATGTAGGCTGCTTGAATTAAAGAGAGAGATTAAGATTATAGGCTTTAATGGACAGACTACTGTTAATACCCAATAGTAGGAGTTGGACCAACAAAATCTTTTTAAGAGGAATAAGAGGAAGATGGAGGACGAACGTGAATCAGTATCGAAGAAGGGAACATTTTCCTTTATGGTTAATATCGAACCATAGTAAGGAGGGATAACATTGAAGAAGGGAACATTTTCCACCGCTCGATGTCTGGCTCAGATACTATTTGTAACAACCCAAGCCCACCACTAAAAGATATTGTCCTCTTTGGACTTTCCCTTCCGGGCTTCCCCTCAAGGTTTTAAAACGCGTCAACTAAGGAGAGATTTCTACATTCTTATCAGAAATACTTCATTCCCCTCTCCAACCGATGTGGGATCTCACGGATCTCCTTCCGCTTGTTCTCATTTTTCGTGAAAATGAACTAGTACTCATCAAGAACATACTGAAAGGAAAACAAGAAAGAGTGGCAATGTAATCATGCTTTTATATAACTTATTGCTATAAAACAACGTTAAAACTGTCCTGAAAACAGTGTTCTTCCTGGATTTCTTTGTGTTCTAACCATCCTGTTTCTTCCAACATTCCTGAGTATGTAAGTAAGCTGGCTTTGCTGCTATTTTGTATTACACTTACCTAGCCATCTGCTTAGACAGCAAGTTCATGAGTTTTTTGCTTGACATCCACAAACATGTTTATAACAAGAACATTTATTGTTGTCAGATCAAAACTTCAAAAAAAGACATCTCTGTCATTTTGTGATAGATGTTCTTATATTCTGGCTGCAGAGAGAACAGTGTCGACAGCAACTTGAAGCTGCGATCGGGAAGAGCGTTTAGCATACAGAAGAGCATCTGCAATGCATCTAAGTTCCCCATACTGTGATCTTTGTAGGTGAGATTTTCTCTTATCCTTTCAATCATTCAAGAAATGAAGATAAGAATGGGATAAGAAAGCCCTTTGGTTGCCAACTGCAGGATTTATTGTCCACTGATTGCAGAATTGGACCATTAGATTCACAAGCTGTCATGATTGATATGTCATAATCAAACTACCTTCTCGTCTACACCATTTTGATTTTGTTAATATCTGCTTTGCTTGAGAAGTTTGCTCATCCAATGATATTGATAGTCTACTCTAAGTTCATATGTTCTTCCACATGATCTTTTGACAAAGTGGGTCTGAGAATGATGTTTTTACTAGTTGAGGTGTGTTTGCAATTATGTTGAAATGTAAGGTTATATTTGCAAATAAGGTTGCTATGTGGCTTTACGTTGCATGTCACCGCGTGATCAAAACACTAGTATTGGTTTCTTAGGTTTGAGATTGATATTTATTTGGTCCTTGAAGTTTCAAAATGAACGATTTTAGTCCTTAGATTTCGTAACGATGCAATCTGTCTTGGGCGAAAGAGAGGATACCTCGATCGAGGAAGATCCTAGATTTTGTTCGATTTTCTTTTGCTTTCTGTTGCTGGTGGGTTAACTCTCTAACTTAGATCCGTTTGCTACTTTGTAACGTCCAAGCCCACCGCTAGTAGATATTGTACTCTTTGGGTTTTTCCTTATAGGGTTCCTCTCAAGGTTTTTAAAACGCGTCTACTAGGGAGAGGTTTCCACACCCTTGTAAAGAATGTTTCGTTCTCCTCCCCAAACGATGTGGGATCTCACAATCCACCCTCTTTCGGGGCCCAGCGTCATAGCTAGCACTCATTCGTTTCTCCAATCGATGTGAGGCCTCCCAATCCACCCTTGTTTGGGGACAAGCATCCTTGTTGGCATACCGCCCCGTGTACACCCCCTTTCGGGGCTCAACCTCCTCACTGGCACACTACCCAGTGTCTGGCTCTGATACCATTTGCAACGCCCCAAACTCACCGCTACCCGATATTGTCTTCTTTGGGTTTCCCTTTCAAGCTGACTCAAAGTTTTTAAAAGGGAGAGGTTTTCACACCTTTATACAAAATGTTTCGTTCTCCTCCCCAACCGATGTGGGATATCACATACTTCCTCGTACATACCTCCCTGACTTTCTTCTTTATGTTTAACGTCGCTGACGGGGTACTAATGCTCGAGTTTCTCTTCTTCCTCCCTTTTTGGTTTCCTTTTTTCTTTTTTTTTTTCTATTTCATTTCTCTATGTTTTTTTTTCTTTTTCTTTTTGCAGGTTTACCGTGGTAGGACTTGCAGAAGGGCGTTATGTAGGCGTGGGTGAAGCGGGTTTGAGATTGATACTTATTTGGTCCTTGAAGTTTCAAAATGATCGGTTTTAGTCTCTAAGTTAGAAAATTTGGTTCTAAATGGTCTCTCACTTCATTTCATCGTTAGTATAGCGACGATATAGCGATGAAAATGACATGGCATTGACA

mRNA sequence

AGAGTGATCATCAGACCAAACAAACTAATTTCTAAATTTAGGCGGCACTCTCCGCTGCCGCAGTCTCCGGCTTCCGACGAAATCGCCGACCCCCTCTCCCCTCTCCGAGCAATCACAGTGGATCCAGCCCCTAACCCGCGTCGTTGATGAGATCGCGCCGCCGCCGCTCATTTTTCAGATTCTCGAGTATCAACCATCACTCCAGTCTATGATTTCATATGCTTTCATCCATATTGGGAAAGAAGGAGAGAACAGTGTCGACAGCAACTTGAAGCTGCGATCGGGAAGAGCGTTTAGCATACAGAAGAGCATCTGCAATGCATCTAAGTTCCCCATACTGTTTACCGTGGTAGGACTTGCAGAAGGGCGTTATGTAGGCGTGGGTGAAGCGGGTTTGAGATTGATACTTATTTGGTCCTTGAAGTTTCAAAATGATCGGTTTTAGTCTCTAAGTTAGAAAATTTGGTTCTAAATGGTCTCTCACTTCATTTCATCGTTAGTATAGCGACGATATAGCGATGAAAATGACATGGCATTGACA

Coding sequence (CDS)

ATGATTTCATATGCTTTCATCCATATTGGGAAAGAAGGAGAGAACAGTGTCGACAGCAACTTGAAGCTGCGATCGGGAAGAGCGTTTAGCATACAGAAGAGCATCTGCAATGCATCTAAGTTCCCCATACTGTTTACCGTGGTAGGACTTGCAGAAGGGCGTTATGTAGGCGTGGGTGAAGCGGGTTTGAGATTGATACTTATTTGGTCCTTGAAGTTTCAAAATGATCGGTTTTAG

Protein sequence

MISYAFIHIGKEGENSVDSNLKLRSGRAFSIQKSICNASKFPILFTVVGLAEGRYVGVGEAGLRLILIWSLKFQNDRF
Homology
[Close]
BLAST of Carg24099 vs. NCBI nr
Match: KAG7033590.1 (hypothetical protein SDJN02_03314 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.1 bits (401), Expect = 1.6e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MISYAFIHIGKEGENSVDSNLKLRSGRAFSIQKSICNASKFPILFTVVGLAEGRYVGVGE 60
          MISYAFIHIGKEGENSVDSNLKLRSGRAFSIQKSICNASKFPILFTVVGLAEGRYVGVGE
Sbjct: 1  MISYAFIHIGKEGENSVDSNLKLRSGRAFSIQKSICNASKFPILFTVVGLAEGRYVGVGE 60

Query: 61 AGLRLILIWSLKFQNDRF 79
          AGLRLILIWSLKFQNDRF
Sbjct: 61 AGLRLILIWSLKFQNDRF 78

[Close]
BLAST of Carg24099 vs. NCBI nr
Match: KAG7033591.1 (hypothetical protein SDJN02_03315 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.3 bits (207), Expect = 4.9e-13
Identity = 47/64 (73.44%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 20  NLKLRSGRAFSIQKSICNASKFPILFTVVGLAEGR-----YVGVGEAGLRLILIWSLKFQ 79
           NLKLRSGRAFSIQKSICNASKFP   TV+ +  GR         GEAGLRLILIWSLKFQ
Sbjct: 48  NLKLRSGRAFSIQKSICNASKFP--HTVIFVYRGRTCRRALCRRGEAGLRLILIWSLKFQ 107

The following BLAST results are available for this feature:
BLAST of Carg24099 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033590.11.6e-35100.00hypothetical protein SDJN02_03314 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7033591.14.9e-1373.44hypothetical protein SDJN02_03315 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg24099 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24099 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg24099 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24099-RACarg24099-RAmRNA