Carg24084 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24084
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Histone H2A
Location	Carg_Chr16: 5466074 .. 5466711 (-)
RNA-Seq Expression	Carg24084
Synteny	Carg24084

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCATCCTTTATTTTTCGTTCAAAATATTCCTGAGTTTGAACTTCATCTCTTTCTGTATCCAAATTTCGACAAATCAATGGCGGGAAGAGGCAAAACTTTGGGATCTGGAGCGTCGAAGAAGGCCACTTCAAGGAGTAGCAAGGCCGGCCTTCAATTTCCCGTCGGTCGTATTGCTCGTTTCTTGAAAGCCGGTAAATACGCTGAACGAGTCGGTGCTGGAGCTCCGGTTTACCTCGCCGCCGTCCTCGAATATCTTGCAGCGGAGGTATAAACACTTTCTCCAGTTTCTAATCCTGAATTTTGTCCTATTTGGATTCGCGTTCAGTTAAGAATTTCTTCCTGAAAATTTCTAGGTTCTGGAATTGGCTGGAAATGCCGCAAGGGACAACAAGAAGACTAGAATTGTGCCTCGCCATATCCAGCTTGCTGTGAGGAACGACGAAGAGCTGAGCAAGCTTCTTGGAGACGTAACGATTGCGAATGGCGGTGTTATGCCTAACATTCACAATCTGCTATTGCCGAAGAAGGCTGGTAGTTCCAAGGCGTCTGGTGGTGAGGATGAATCCTAAATTAAATGAAGAAACGTGGTCGAGGTGTTCAGATCTGGAATTTAGGTTTTGTTAGCTTTATGTGCTTT

mRNA sequence

GTCATCCTTTATTTTTCGTTCAAAATATTCCTGAGTTTGAACTTCATCTCTTTCTGTATCCAAATTTCGACAAATCAATGGCGGGAAGAGGCAAAACTTTGGGATCTGGAGCGTCGAAGAAGGCCACTTCAAGGAGTAGCAAGGCCGGCCTTCAATTTCCCGTCGGTCGTATTGCTCGTTTCTTGAAAGCCGGTAAATACGCTGAACGAGTCGGTGCTGGAGCTCCGGTTTACCTCGCCGCCGTCCTCGAATATCTTGCAGCGGAGGTTCTGGAATTGGCTGGAAATGCCGCAAGGGACAACAAGAAGACTAGAATTGTGCCTCGCCATATCCAGCTTGCTGTGAGGAACGACGAAGAGCTGAGCAAGCTTCTTGGAGACGTAACGATTGCGAATGGCGGTGTTATGCCTAACATTCACAATCTGCTATTGCCGAAGAAGGCTGGTAGTTCCAAGGCGTCTGGTGGTGAGGATGAATCCTAAATTAAATGAAGAAACGTGGTCGAGGTGTTCAGATCTGGAATTTAGGTTTTGTTAGCTTTATGTGCTTT

Coding sequence (CDS)

ATGGCGGGAAGAGGCAAAACTTTGGGATCTGGAGCGTCGAAGAAGGCCACTTCAAGGAGTAGCAAGGCCGGCCTTCAATTTCCCGTCGGTCGTATTGCTCGTTTCTTGAAAGCCGGTAAATACGCTGAACGAGTCGGTGCTGGAGCTCCGGTTTACCTCGCCGCCGTCCTCGAATATCTTGCAGCGGAGGTTCTGGAATTGGCTGGAAATGCCGCAAGGGACAACAAGAAGACTAGAATTGTGCCTCGCCATATCCAGCTTGCTGTGAGGAACGACGAAGAGCTGAGCAAGCTTCTTGGAGACGTAACGATTGCGAATGGCGGTGTTATGCCTAACATTCACAATCTGCTATTGCCGAAGAAGGCTGGTAGTTCCAAGGCGTCTGGTGGTGAGGATGAATCCTAA

Protein sequence

MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES

Homology

[Close]

BLAST of Carg24084 vs. NCBI nr
Match: XP_022929379.1 (histone H2A.6 [Cucurbita moschata] >XP_022985282.1 histone H2A.6 [Cucurbita maxima] >XP_023552394.1 histone H2A.6 [Cucurbita pepo subsp. pepo] >KAG6577402.1 putative histone H2A.3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015480.1 putative histone H2A.3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.7 bits (644), Expect = 1.8e-63
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDES 135
           KAGSSKASGGEDES
Sbjct: 121 KAGSSKASGGEDES 134

[Close]

BLAST of Carg24084 vs. NCBI nr
Match: XP_022142823.1 (probable histone H2A.1 [Momordica charantia])

HSP 1 Score: 248.4 bits (633), Expect = 3.4e-62
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDE 134
           K GSSKASGG+DE
Sbjct: 121 KTGSSKASGGDDE 133

[Close]

BLAST of Carg24084 vs. NCBI nr
Match: XP_039026996.1 (histone H2A.6 [Hibiscus syriacus] >KAE8680192.1 Protein H2A.7 [Hibiscus syriacus])

HSP 1 Score: 247.7 bits (631), Expect = 5.8e-62
Identity = 130/133 (97.74%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDE 134
           KAG+SKASGG+D+
Sbjct: 121 KAGTSKASGGDDD 133

[Close]

BLAST of Carg24084 vs. NCBI nr
Match: XP_018852324.1 (histone H2A.6 [Juglans regia] >XP_040987496.1 histone H2A.6 [Juglans microcarpa x Juglans regia] >XP_042947189.1 histone H2A.6 [Carya illinoinensis] >KAF5478813.1 hypothetical protein F2P56_005343 [Juglans regia] >KAG2682127.1 hypothetical protein I3760_11G176900 [Carya illinoinensis] >KAG6637503.1 hypothetical protein CIPAW_11G182500 [Carya illinoinensis] >KAG6689517.1 hypothetical protein I3842_11G179600 [Carya illinoinensis] >KAG7957487.1 hypothetical protein I3843_11G177900 [Carya illinoinensis])

HSP 1 Score: 246.9 bits (629), Expect = 9.9e-62
Identity = 130/134 (97.01%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKAQSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDES 135
           KAG+SKASGG+D+S
Sbjct: 121 KAGTSKASGGDDDS 134

[Close]

BLAST of Carg24084 vs. NCBI nr
Match: KAB1215310.1 (putative histone H2A.1 [Morella rubra])

HSP 1 Score: 246.5 bits (628), Expect = 1.3e-61
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKAQSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDES 135
           K GSSKASGG+D+S
Sbjct: 121 KTGSSKASGGDDDS 134

[Close]

BLAST of Carg24084 vs. ExPASy Swiss-Prot
Match: Q9LD28 (Histone H2A.6 OS=Arabidopsis thaliana OX=3702 GN=RAT5 PE=1 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 8.7e-61
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG +KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSK 127
           KAG+SK
Sbjct: 121 KAGASK 126

[Close]

BLAST of Carg24084 vs. ExPASy Swiss-Prot
Match: O81826 (Probable histone H2A.3 OS=Arabidopsis thaliana OX=3702 GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-60
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGA+KK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSK 127
           KAGSSK
Sbjct: 121 KAGSSK 126

[Close]

BLAST of Carg24084 vs. ExPASy Swiss-Prot
Match: Q9C681 (Probable histone H2A.1 OS=Arabidopsis thaliana OX=3702 GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.5e-60
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG++KKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGED 133
           K G+SK S  +D
Sbjct: 121 KTGASKPSAEDD 132

[Close]

BLAST of Carg24084 vs. ExPASy Swiss-Prot
Match: Q9LHQ5 (Probable histone H2A.2 OS=Arabidopsis thaliana OX=3702 GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 9.6e-60
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG +KK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPK 120

Query: 121 KAGSSKASGGED 133
           KAG+SK S  ED
Sbjct: 121 KAGASKPSADED 132

[Close]

BLAST of Carg24084 vs. ExPASy Swiss-Prot
Match: A2YVE5 (Probable histone H2A.3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.8e-59
Identity = 123/134 (91.79%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK +GS A+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKAIGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSS-KASGGEDE 134
           KAGSS KA+  +DE
Sbjct: 121 KAGSSAKAAAADDE 134

[Close]

BLAST of Carg24084 vs. ExPASy TrEMBL
Match: A0A6J1J4G3 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111483322 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.7e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDES 135
           KAGSSKASGGEDES
Sbjct: 121 KAGSSKASGGEDES 134

[Close]

BLAST of Carg24084 vs. ExPASy TrEMBL
Match: A0A6J1ENK4 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111435971 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.7e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDES 135
           KAGSSKASGGEDES
Sbjct: 121 KAGSSKASGGEDES 134

[Close]

BLAST of Carg24084 vs. ExPASy TrEMBL
Match: A0A2N9FT44 (Histone H2A OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18197 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.6e-63
Identity = 131/134 (97.76%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGA+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDES 135
           KAGSSKASGG+D+S
Sbjct: 121 KAGSSKASGGDDDS 134

[Close]

BLAST of Carg24084 vs. ExPASy TrEMBL
Match: A0A6J1CP89 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111012850 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDE 134
           K GSSKASGG+DE
Sbjct: 121 KTGSSKASGGDDE 133

[Close]

BLAST of Carg24084 vs. ExPASy TrEMBL
Match: A0A6A2XWP3 (Histone H2A OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111392pilonHSYRG00427 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.8e-62
Identity = 130/133 (97.74%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGEDE 134
           KAG+SKASGG+D+
Sbjct: 121 KAGTSKASGGDDD 133

[Close]

BLAST of Carg24084 vs. TAIR 10
Match: AT5G54640.1 (Histone superfamily protein )

HSP 1 Score: 234.2 bits (596), Expect = 6.2e-62
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG +KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSK 127
           KAG+SK
Sbjct: 121 KAGASK 126

[Close]

BLAST of Carg24084 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 233.4 bits (594), Expect = 1.1e-61
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGA+KK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSK 127
           KAGSSK
Sbjct: 121 KAGSSK 126

[Close]

BLAST of Carg24084 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 233.4 bits (594), Expect = 1.1e-61
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGK LGSGA+KK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSK 127
           KAGSSK
Sbjct: 121 KAGSSK 126

[Close]

BLAST of Carg24084 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 232.6 bits (592), Expect = 1.8e-61
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG++KKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120

Query: 121 KAGSSKASGGED 133
           K G+SK S  +D
Sbjct: 121 KTGASKPSAEDD 132

[Close]

BLAST of Carg24084 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 )

HSP 1 Score: 230.7 bits (587), Expect = 6.8e-61
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60
           MAGRGKTLGSG +KK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYL
Sbjct: 1   MAGRGKTLGSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYL 60

Query: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 120
           AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPK
Sbjct: 61  AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPK 120

Query: 121 KAGSSKASGGED 133
           KAG+SK S  ED
Sbjct: 121 KAGASKPSADED 132

The following BLAST results are available for this feature:

BLAST of Carg24084 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929379.1	1.8e-63	100.00	histone H2A.6 [Cucurbita moschata] >XP_022985282.1 histone H2A.6 [Cucurbita maxi...	[more]
XP_022142823.1	3.4e-62	98.50	probable histone H2A.1 [Momordica charantia]	[more]
XP_039026996.1	5.8e-62	97.74	histone H2A.6 [Hibiscus syriacus] >KAE8680192.1 Protein H2A.7 [Hibiscus syriacus...	[more]
XP_018852324.1	9.9e-62	97.01	histone H2A.6 [Juglans regia] >XP_040987496.1 histone H2A.6 [Juglans microcarpa ...	[more]
KAB1215310.1	1.3e-61	97.01	putative histone H2A.1 [Morella rubra]	[more]

BLAST of Carg24084 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD28	8.7e-61	97.62	Histone H2A.6 OS=Arabidopsis thaliana OX=3702 GN=RAT5 PE=1 SV=1	[more]
O81826	1.5e-60	97.62	Probable histone H2A.3 OS=Arabidopsis thaliana OX=3702 GN=At4g27230 PE=1 SV=1	[more]
Q9C681	2.5e-60	92.42	Probable histone H2A.1 OS=Arabidopsis thaliana OX=3702 GN=At1g51060 PE=1 SV=1	[more]
Q9LHQ5	9.6e-60	92.42	Probable histone H2A.2 OS=Arabidopsis thaliana OX=3702 GN=At3g20670 PE=1 SV=1	[more]
A2YVE5	2.8e-59	91.79	Probable histone H2A.3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_028288 PE=3...	[more]

BLAST of Carg24084 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J4G3	8.7e-64	100.00	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111483322 PE=3 SV=1	[more]
A0A6J1ENK4	8.7e-64	100.00	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111435971 PE=3 SV=1	[more]
A0A2N9FT44	9.6e-63	97.76	Histone H2A OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18197 PE=3 SV=1	[more]
A0A6J1CP89	1.6e-62	98.50	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111012850 PE=3 SV=1	[more]
A0A6A2XWP3	2.8e-62	97.74	Histone H2A OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111392pilonHSYRG00427 P...	[more]

BLAST of Carg24084 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54640.1	6.2e-62	97.62	Histone superfamily protein	[more]
AT4G27230.1	1.1e-61	97.62	histone H2A 2	[more]
AT4G27230.2	1.1e-61	97.62	histone H2A 2	[more]
AT1G51060.1	1.8e-61	92.42	histone H2A 10	[more]
AT3G20670.1	6.8e-61	92.42	histone H2A 13	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 44..59 score: 90.36 coord: 73..87 score: 78.86 coord: 101..119 score: 66.52 coord: 15..37 score: 72.51 coord: 59..72 score: 89.46
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 4..124 e-value: 1.2E-76 score: 270.6
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 9..121 e-value: 8.19822E-68 score: 198.328
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 93..126 e-value: 2.8E-18 score: 65.4
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 13..90 e-value: 1.9E-14 score: 54.1
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..129 e-value: 9.2E-65 score: 218.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 9..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR23430:SF286	HISTONE H2A.6	coord: 2..132
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 2..132
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 23..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24084-RA	Carg24084-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity