Carg24044 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24044
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	la-related protein 6C-like
Location	Carg_Chr02: 2145497 .. 2148861 (-)
RNA-Seq Expression	Carg24044
Synteny	Carg24044

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAAGGAGGGAAGTTCTTGGTGAGAAATGGCAAAATGGAGAGCCACTTGGGCGAAATTCCCACCTCGAAATCCTCAGTCAAACTCAAATCCAACGGCCCTTTGTCACAAAATCCTACCCTCCTTTCAATCCACCCCCAGATGCATATATTTGGGCGCGAAATCTGCGTCGATTTGCAGATTTCAGTTACTAAACTTCAGGCTAAATCTTACGCGCGCGCGCACACACACACACACACTGAGATTTCCATAACCCTTATGCGTTCCAAACTCTTCTTCGGATTAGCGCAAGTGGGAGAGGGGAATCAGAGAAGATATGGCGGAATCGAATCCGGAAAAGAAGGTGAATCCGAACCCTGAAATGGAGGTCGTCAAACAAGCTGTTAATGGCGATGCTGGTGTTGGTAGTAGTACCAGCAATGGTGATCTTTCCTTCAAATTCAATGCCCAAGCGCCTGAGTTCTTCCCTAGATCGCAAACTCAGATGCCTGTTACCGGCTATTTTCATCCTTATTTCCATTTTCTTGGTGGGGCTCCTGCTACTTCCGATTGGTTCTTTATTGGCGATCAAGAACCCACCTATTTGATCCCTAATCCCACCATTCCCCTCCCTAATTTCTCTAAGAATCCCCGTTCTGATGATATTCACCAAAAACTCGTCAAACAGGTAACCTTGTTTCATTCTGTTCTTGATTCCTTTTTGTCTTGATTTCTTTTATATTCATCGTTTGATTCCACAATCCTGCTTCCTGTTCTGTGTTCATCTGAATGATCAATCACCAAACTCTGATTATATGTATGCTTCTTGCTTTTTGGTAAATATATGATAGTCCTTTAGAACTCTGTATTTGGATGATCAATGTGCCATGCTCGTAACTAGTTCATGTTATCATTTTGTCTGTCACATCAAGATTATCTATAATAATGTTCCTAAGGTACACTCCTTTTCCATTAGTTTTCTCCTTGGATTCCTTCTTAACGTGTTTGATCTCTCTTTCTTTATGCTTTGAACTTAAAGGGTTTGATATGCATAAGTTCTTCCCTATGACTATAATCCCATATATGTTGTTCATAGTTGGAACATCAGTTCAGCATCTTATGAATGATTTCAATTTTACAGGTAGAATATCAGTTCAGCGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAAAGCATTAGCAAAGATCCTGATGGTTATGGTATAATCTTTGGAAGTCTATCACCTGGATGTGTTAATTCGAATTTTCGATATATTTTTAACTGAATTATGATTTGTCTTTCTTTCGTTTCCCTTTATGAAGTTCCAATTTCTGTTATTTCGTCCACCAAAAAAGTGAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGCTCCTCTTCAAAGCTTGTAAGTTCTTAAGTTAAGCACTCAATTTTCCACTCTTTCTGGAAAAATAAGAACTCTTGATTTAATGTGATTCATATCTGATCTTCTGAAGGTTGTTAGTGCTGATGGGAAGAAAGTTAAGCGTAAGCATCCCTTTACGGACAAGGACAAAGAGGAATTGCTGGTAAGATCAACCATTGTACAAATGATGCAGAACATTTATCTTTAGCTGAGTATGGTGTAATGTTTTTGTTCATTGATTTGCAGTCCCGCACGGTCGTTGTGGAGAATTTGCCCGACAATCACTCACACCACAACCTCGAGAAGATATTTAGCGTCATTGGGAGGTAGTTTCATTAACATCATCACTCAGTCTTATTCCTTGTTCTATTAGATGTTTAAACTGTCTTCACTGAGCTTCATTCATTAATGATATCTGACCAGTGTGAAAACTGTCCGAATCTGCCATCCCCCAGAGTCAAATCCGTGCTGCTCTAAAGGTGAATTGTTTATCAGTAACAAGGTATTGTGAATCATCCTTTACTGTAATGTATATCCAAGGCACTTCTCCTTAAAATCCTTTTCTCATTGTTACTTCATTTGTTTGAAGCTTCATGCACTTGTGGAATACGAGACCGCAGAGTTGGCTGAAAGAGCGGTATGCATCTATTGTACGCTATAGGTGATCGAGTTACTTGTATCCAATCTTTTTATTGTCTTTTCCACGTTTTTTGTGCCTGCTAGGCTGAGAAGTTAAATGATGAGAGAAACTGGAGGAAAGGGCTCCGCGTAAGGCTATTGCTCAGACGCTCGGTAAGTGTAATAAGACGATGTGCCTGCATTTTCATTATTTACATGCTCCTGCTTAGTTCAACTCTAATTATTATTTCTGGATAGCCGAAATCGGTTCTGAAGACTCGAAAGTCCGATTTTGATTGTATTCTGGATGAAGATGATTCACCATCTACTGTGTCCACTGAACAAGAGTCCTCTCTGCCAAATATCACTGAACTGATAAACGATTGCAGTGTACGTATTTCGTTTCTAAAACTTTTTCGTCCTTGATTAACTGATTTGTAATTCTCAAATGACATGAAGTATCTGGTTTACTAGTCCGAGGAGAACTCTACATCAGCTAAGAAGGGTTGGGGACGAGGCCGTGGGAAGGGTCGTGGACGAATTCATAGCCATCTCGATCGTAGCTGTAGCTTGCCAGTGGCAGCAATGCAATCAAGTAGTCAGGTTGTTTGTGAAGCATCTTCCAAACTCACTACGAAGAGTCCGAGAATGCCTGATGGGACGAAAGGGTTCACCATGGGACGAGGCAAGCCATTGAGCTCTAAACCTGTATTTTGAATGAATAGAGAAATGTAGGGAAACCTTTCTTTGGTTGTTGTTAATTAGGGTGGAAAAAACTGACTATTTTGCTGCTACCTATGCTTGTGTGTTTTTTGGTAATAATGGATATGTTTGATAGGATTTTGGTTTATATAATGTGGCGCTGCCCATCATTCTATTTTTCTAGCCCTTATATTTTTCGAAGTGCAGATATGATATCATGAATGCAGGATGAAGGATTCTTTGTGTGTTGATGGTTGACGGATCTTGAACATAGTGTCACAGTTGCACTCGTTCGAGACTTAACTTAGCTATTGATGACACAATAGTGTATGATTTAGTTTCAGGTTTGAGACTTAACTTAGCTATTGATGATACAAATAGTGTATGATTTAGTTTCAGGTTCGAGATTTAGCTATTGATGACACAAATAGTGTATGATTTAGTTTTAGGTTCGAGACTTAGCTATTGATGACACAAATAGTGTATGATTTAGTTTTAGGTTCGAGACTTAACTTAGCTATCGATGACACATATAGTACATGATTTAGTTTTCTTGTAAATATGTTCGAGACTTATCTTAGCTATTGATGACATAAATAGTGTATGATTTAGTTTCAGTTTCGTGACTTAACTTAGCTATTGATG

mRNA sequence

GAAGAAAGGAGGGAAGTTCTTGGTGAGAAATGGCAAAATGGAGAGCCACTTGGGCGAAATTCCCACCTCGAAATCCTCAGTCAAACTCAAATCCAACGGCCCTTTGTCACAAAATCCTACCCTCCTTTCAATCCACCCCCAGATGCATATATTTGGGCGCGAAATCTGCGTCGATTTGCAGATTTCAGTTACTAAACTTCAGGCTAAATCTTACGCGCGCGCGCACACACACACACACACTGAGATTTCCATAACCCTTATGCGTTCCAAACTCTTCTTCGGATTAGCGCAAGTGGGAGAGGGGAATCAGAGAAGATATGGCGGAATCGAATCCGGAAAAGAAGGTGAATCCGAACCCTGAAATGGAGGTCGTCAAACAAGCTGTTAATGGCGATGCTGGTGTTGGTAGTAGTACCAGCAATGGTGATCTTTCCTTCAAATTCAATGCCCAAGCGCCTGAGTTCTTCCCTAGATCGCAAACTCAGATGCCTGTTACCGGCTATTTTCATCCTTATTTCCATTTTCTTGGTGGGGCTCCTGCTACTTCCGATTGGTTCTTTATTGGCGATCAAGAACCCACCTATTTGATCCCTAATCCCACCATTCCCCTCCCTAATTTCTCTAAGAATCCCCGTTCTGATGATATTCACCAAAAACTCGTCAAACAGGTAGAATATCAGTTCAGCGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAAAGCATTAGCAAAGATCCTGATGGTTATGTTCCAATTTCTGTTATTTCGTCCACCAAAAAAGTGAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGCTCCTCTTCAAAGCTTGTTGTTAGTGCTGATGGGAAGAAAGTTAAGCGTAAGCATCCCTTTACGGACAAGGACAAAGAGGAATTGCTGGTAAGATCAACCATTTCCCGCACGGTCGTTGTGGAGAATTTGCCCGACAATCACTCACACCACAACCTCGAGAAGATATTTAGCGTCATTGGGAGTGTGAAAACTGTCCGAATCTGCCATCCCCCAGAGTCAAATCCGTGCTGCTCTAAAGGTGAATTGTTTATCAGTAACAAGCTTCATGCACTTGTGGAATACGAGACCGCAGAGTTGGCTGAAAGAGCGGCTGAGAAGTTAAATGATGAGAGAAACTGGAGGAAAGGGCTCCGCGTAAGGCTATTGCTCAGACGCTCGCCGAAATCGGTTCTGAAGACTCGAAAGTCCGATTTTGATTGTATTCTGGATGAAGATGATTCACCATCTACTGTGTCCACTGAACAAGAGTCCTCTCTGCCAAATATCACTGAACTGATAAACGATTGCAGTTCCGAGGAGAACTCTACATCAGCTAAGAAGGGTTGGGGACGAGGCCGTGGGAAGGGTCGTGGACGAATTCATAGCCATCTCGATCGTAGCTGTAGCTTGCCAGTGGCAGCAATGCAATCAAGTAGTCAGGTTGTTTGTGAAGCATCTTCCAAACTCACTACGAAGAGTCCGAGAATGCCTGATGGGACGAAAGGGTTCACCATGGGACGAGGCAAGCCATTGAGCTCTAAACCTGTATTTTGAATGAATAGAGAAATGTAGGGAAACCTTTCTTTGGTTGTTGTTAATTAGGGTGGAAAAAACTGACTATTTTGCTGCTACCTATGCTTGTGTGTTTTTTGGTAATAATGGATATGTTTGATAGGATTTTGGTTTATATAATGTGGCGCTGCCCATCATTCTATTTTTCTAGCCCTTATATTTTTCGAAGTGCAGATATGATATCATGAATGCAGGATGAAGGATTCTTTGTGTGTTGATGGTTGACGGATCTTGAACATAGTGTCACAGTTGCACTCGTTCGAGACTTAACTTAGCTATTGATGACACAATAGTGTATGATTTAGTTTCAGGTTTGAGACTTAACTTAGCTATTGATGATACAAATAGTGTATGATTTAGTTTCAGGTTCGAGACTTATCTTAGCTATTGATGACATAAATAGTGTATGATTTAGTTTCAGTTTCGTGACTTAACTTAGCTATTGATG

Coding sequence (CDS)

ATGGCGGAATCGAATCCGGAAAAGAAGGTGAATCCGAACCCTGAAATGGAGGTCGTCAAACAAGCTGTTAATGGCGATGCTGGTGTTGGTAGTAGTACCAGCAATGGTGATCTTTCCTTCAAATTCAATGCCCAAGCGCCTGAGTTCTTCCCTAGATCGCAAACTCAGATGCCTGTTACCGGCTATTTTCATCCTTATTTCCATTTTCTTGGTGGGGCTCCTGCTACTTCCGATTGGTTCTTTATTGGCGATCAAGAACCCACCTATTTGATCCCTAATCCCACCATTCCCCTCCCTAATTTCTCTAAGAATCCCCGTTCTGATGATATTCACCAAAAACTCGTCAAACAGGTAGAATATCAGTTCAGCGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAAAGCATTAGCAAAGATCCTGATGGTTATGTTCCAATTTCTGTTATTTCGTCCACCAAAAAAGTGAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGCTCCTCTTCAAAGCTTGTTGTTAGTGCTGATGGGAAGAAAGTTAAGCGTAAGCATCCCTTTACGGACAAGGACAAAGAGGAATTGCTGGTAAGATCAACCATTTCCCGCACGGTCGTTGTGGAGAATTTGCCCGACAATCACTCACACCACAACCTCGAGAAGATATTTAGCGTCATTGGGAGTGTGAAAACTGTCCGAATCTGCCATCCCCCAGAGTCAAATCCGTGCTGCTCTAAAGGTGAATTGTTTATCAGTAACAAGCTTCATGCACTTGTGGAATACGAGACCGCAGAGTTGGCTGAAAGAGCGGCTGAGAAGTTAAATGATGAGAGAAACTGGAGGAAAGGGCTCCGCGTAAGGCTATTGCTCAGACGCTCGCCGAAATCGGTTCTGAAGACTCGAAAGTCCGATTTTGATTGTATTCTGGATGAAGATGATTCACCATCTACTGTGTCCACTGAACAAGAGTCCTCTCTGCCAAATATCACTGAACTGATAAACGATTGCAGTTCCGAGGAGAACTCTACATCAGCTAAGAAGGGTTGGGGACGAGGCCGTGGGAAGGGTCGTGGACGAATTCATAGCCATCTCGATCGTAGCTGTAGCTTGCCAGTGGCAGCAATGCAATCAAGTAGTCAGGTTGTTTGTGAAGCATCTTCCAAACTCACTACGAAGAGTCCGAGAATGCCTGATGGGACGAAAGGGTTCACCATGGGACGAGGCAAGCCATTGAGCTCTAAACCTGTATTTTGA

Protein sequence

MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPVF

Homology

[Close]

BLAST of Carg24044 vs. NCBI nr
Match: KAG7035140.1 (La-related protein 6C [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 829.3 bits (2141), Expect = 1.5e-236
Identity = 421/421 (100.00%), Postives = 421/421 (100.00%), Query Frame = 0


Query: 1   MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT 60
           MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT
Sbjct: 1   MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT 60

Query: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY 120
           GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY
Sbjct: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY 120

Query: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180
           QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA
Sbjct: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180

Query: 181 DGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240
           DGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH
Sbjct: 181 DGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240

Query: 241 PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300
           PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS
Sbjct: 241 PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300

Query: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360
           VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG
Sbjct: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360

Query: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 420
           RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV
Sbjct: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 420

Query: 421 F 422
           F
Sbjct: 421 F 421

[Close]

BLAST of Carg24044 vs. NCBI nr
Match: KAG6605146.1 (La-related protein 6C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 814.3 bits (2102), Expect = 4.9e-232
Identity = 416/421 (98.81%), Postives = 416/421 (98.81%), Query Frame = 0


Query: 1   MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT 60
           MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT
Sbjct: 1   MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT 60

Query: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY 120
           GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY
Sbjct: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY 120

Query: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180
           QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA
Sbjct: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180

Query: 181 DGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240
           DGKKVKRKHPFTDKDKEELL     SRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH
Sbjct: 181 DGKKVKRKHPFTDKDKEELL-----SRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240

Query: 241 PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300
           PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS
Sbjct: 241 PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300

Query: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360
           VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG
Sbjct: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360

Query: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 420
           RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV
Sbjct: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 416

Query: 421 F 422
           F
Sbjct: 421 F 416

[Close]

BLAST of Carg24044 vs. NCBI nr
Match: XP_022948237.1 (la-related protein 6C-like [Cucurbita moschata])

HSP 1 Score: 812.0 bits (2096), Expect = 2.4e-231
Identity = 415/421 (98.57%), Postives = 415/421 (98.57%), Query Frame = 0


Query: 1   MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT 60
           MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT
Sbjct: 1   MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT 60

Query: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY 120
           GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY
Sbjct: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY 120

Query: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180
           QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA
Sbjct: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180

Query: 181 DGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240
           DGKKVKRKHPFTDKDKEELL     SRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH
Sbjct: 181 DGKKVKRKHPFTDKDKEELL-----SRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240

Query: 241 PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300
           PPESNPCCSKGELFISNKLHALVEYE AELAERAAEKLNDERNWRKGLRVRLLLRRSPKS
Sbjct: 241 PPESNPCCSKGELFISNKLHALVEYEIAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300

Query: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360
           VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG
Sbjct: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360

Query: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 420
           RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV
Sbjct: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 416

Query: 421 F 422
           F
Sbjct: 421 F 416

[Close]

BLAST of Carg24044 vs. NCBI nr
Match: XP_023007489.1 (la-related protein 6C-like [Cucurbita maxima])

HSP 1 Score: 808.1 bits (2086), Expect = 3.5e-230
Identity = 412/421 (97.86%), Postives = 415/421 (98.57%), Query Frame = 0


Query: 1   MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT 60
           MAE+NPEKKVN NPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPV+
Sbjct: 1   MAEANPEKKVNSNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVS 60

Query: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY 120
           GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKL+KQVEY
Sbjct: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLIKQVEY 120

Query: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180
           QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA
Sbjct: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180

Query: 181 DGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240
           DGKKVKRKHPFTDKDKEELL     SRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH
Sbjct: 181 DGKKVKRKHPFTDKDKEELL-----SRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240

Query: 241 PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300
           PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS
Sbjct: 241 PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300

Query: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360
           VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG
Sbjct: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360

Query: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 420
           RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV
Sbjct: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 416

Query: 421 F 422
           F
Sbjct: 421 F 416

[Close]

BLAST of Carg24044 vs. NCBI nr
Match: XP_023532349.1 (la-related protein 6C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 806.6 bits (2082), Expect = 1.0e-229
Identity = 412/421 (97.86%), Postives = 414/421 (98.34%), Query Frame = 0


Query: 1   MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT 60
           MAE+NPEKKVN NPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT
Sbjct: 1   MAEANPEKKVNQNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT 60

Query: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY 120
           GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSK+PRSDDIHQKLVKQVEY
Sbjct: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKSPRSDDIHQKLVKQVEY 120

Query: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180
           QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA
Sbjct: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180

Query: 181 DGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240
           DGKKVKRKHPFTDKDKEELL     SRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH
Sbjct: 181 DGKKVKRKHPFTDKDKEELL-----SRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240

Query: 241 PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300
           PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS
Sbjct: 241 PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300

Query: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360
           VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG
Sbjct: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360

Query: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 420
           RGRIHSHLDRSCSLP AAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV
Sbjct: 361 RGRIHSHLDRSCSLPAAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 416

Query: 421 F 422
           F
Sbjct: 421 F 416

[Close]

BLAST of Carg24044 vs. ExPASy Swiss-Prot
Match: Q9LHL3 (La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 1.5e-103
Identity = 227/443 (51.24%), Postives = 281/443 (63.43%), Query Frame = 0


Query: 26  DAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQ------MPVTGYFHPYFHFLGG------- 85
           D G GSS +    +FKFNAQAPEF PRS T        PV+GYF+P FH+ GG       
Sbjct: 20  DGGGGSSGAQA-TAFKFNAQAPEFVPRSHTTAPAPQVSPVSGYFYPCFHYNGGCIGGCGG 79

Query: 86  ----------APATSDWFFIGDQEPT------------YLIPNPTIPLP------NFSKN 145
                        +SDW ++G  +PT            + I NP +  P      + SKN
Sbjct: 80  GVCGGGGTGVGTQSSDWIYVGGGDPTAQHQHVHDPAAAFYISNPAVQFPASQNSSSSSKN 139

Query: 146 PRSDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNN 205
             SDD+  K+VKQVEYQF+DMSLLANES++K ISKDP+GYVP+S I+STKK+K+L++N++
Sbjct: 140 LLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHH 199

Query: 206 LIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLE 265
           L+  ALRSSSKLVVS DGKKVKR   FTD+D+EEL       RTVV ENLPD+HS+ NLE
Sbjct: 200 LVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQ-----GRTVVAENLPDDHSYQNLE 259

Query: 266 KIFSVIGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNW 325
           KIF V+G+VK +RICHPPESN    KG+  +SNK+HAL+EY+   +A++A EKLNDERNW
Sbjct: 260 KIFGVVGNVKAIRICHPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNW 319

Query: 326 RKGLRVRLLLRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEE 385
           RKGLRVRLLLR SPKSVLK R+ +FD IL +D+ PS  S E    L ++TE   D   ++
Sbjct: 320 RKGLRVRLLLRCSPKSVLKNRR-NFDGILIDDELPSYESGEDSPRL-HLTESQLDNDGDD 379

Query: 386 NSTSAKKGWGRGRGKGRGR-------------IHSHLDRSCSLPVAAMQSSSQVVCEASS 415
           N+      WG+GRGKGRGR                 L  S  +P      SS      S 
Sbjct: 380 NNVGGL--WGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHESS------SP 439

[Close]

BLAST of Carg24044 vs. ExPASy Swiss-Prot
Match: O80567 (La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 4.2e-53
Identity = 139/366 (37.98%), Postives = 196/366 (53.55%), Query Frame = 0


Query: 102 SKNPRSDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLST 161
           SK    +D  QK+V QVEY FSD++L   + L + I KDP+GYVPI V++S KK+K++  
Sbjct: 185 SKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVIN 244

Query: 162 NNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHH 221
           NN+ +   L++S+KL VS DGKKV+R  P T+   EEL      SR +V ENLP++H + 
Sbjct: 245 NNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQ-----SRIIVAENLPEDHCYQ 304

Query: 222 NLEKIFSVIGSVKTVRICH--------PPESNPCCSKGELFISNKLHALVEYETAELAER 281
           NL KIFS +GSVK +R C         PP +           SNK+HA VEYE  ELAER
Sbjct: 305 NLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAER 364

Query: 282 AAEKLNDERNWRKGLRVRLLLR---RSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSL 341
           A  +L++  NWR GL+VRL+L+   + PK      +   D  ++ ++  +T S +Q    
Sbjct: 365 AVTELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQP--- 424

Query: 342 PNITELINDCSSE----------------ENSTSAKKGWGRGRGKGRGRIHSHLDRSCSL 401
             I +  +DCS E                E +   +KG  RGRGKGRGR   H +++ + 
Sbjct: 425 --IEKQSDDCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNN 484

Query: 402 PVAAMQSSS-------------QVVCEASS------------KLTTKSPRMPDGTKGFTM 416
             +  Q+ +             QV  + S+            K     PRMPDGT+GF+M
Sbjct: 485 NHSHNQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSM 540

[Close]

BLAST of Carg24044 vs. ExPASy Swiss-Prot
Match: Q94A38 (La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.4e-43
Identity = 120/318 (37.74%), Postives = 173/318 (54.40%), Query Frame = 0


Query: 108 DDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIV 167
           D+++QK+++QVEY FSD +L  ++ L  ++ ++  G+VPIS I++  K+K L+ ++ LIV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 168 QALRSSSKLVVSADGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIF 227
            AL+ SS LVVSAD KKVKR  P  +       +R     TV+VENLP++HS+ N+ +IF
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPE-------IRDPKIFTVLVENLPEDHSNENIREIF 220

Query: 228 SVIGSVKTVRICHP--PESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWR 287
              GS+K+V IC P   E +    K E FI  +LHA VEYET E AE+AA  LN+E++WR
Sbjct: 221 GKAGSIKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWR 280

Query: 288 KGLRVRLL--------LRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELI 347
            GLRV+LL         RR  +  +   K     + D+        T +  +   +    
Sbjct: 281 NGLRVKLLEQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQN-HRLHHSD 340

Query: 348 NDCSSEENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKS 407
           N    +  +    K   +GR  G+GR  +H   +      A  SS               
Sbjct: 341 NPADDDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPG 400

Query: 408 PRMPDGTKGFTMGRGKPL 416
           PRMPDGT+GFTMGRGK +
Sbjct: 401 PRMPDGTRGFTMGRGKAI 410

[Close]

BLAST of Carg24044 vs. ExPASy Swiss-Prot
Match: Q05CL8 (La-related protein 7 OS=Mus musculus OX=10090 GN=Larp7 PE=1 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 4.4e-18
Identity = 62/178 (34.83%), Postives = 96/178 (53.93%), Query Frame = 0


Query: 103 KNPRSDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTN 162
           K  R   +   + KQV++ F D +L  ++ L + I K  DGYV IS++ S  K+K L+T+
Sbjct: 21  KRSRVKQVLADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTD 80

Query: 163 NNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHN 222
             LI +AL+SSS + +  +G +++RK P  ++ K+E        RTV VE LP N +H  
Sbjct: 81  GKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDE------EERTVYVELLPKNVTHSW 140

Query: 223 LEKIFSVIGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLND 281
           +E++F   G+V  + I H   +             K  A VE+ET E A +A E LN+
Sbjct: 141 IERVFGKCGNVVYISIPHYKSTG----------DPKGFAFVEFETKEQAAKAIEFLNN 182

[Close]

BLAST of Carg24044 vs. ExPASy Swiss-Prot
Match: Q4G0J3 (La-related protein 7 OS=Homo sapiens OX=9606 GN=LARP7 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.8e-18
Identity = 62/178 (34.83%), Postives = 95/178 (53.37%), Query Frame = 0


Query: 103 KNPRSDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTN 162
           K  R   +   + KQV++ F D +L  +  L + I K  DGYV IS++ S  K+K L+T+
Sbjct: 27  KRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTD 86

Query: 163 NNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHN 222
             LI +ALRSS+ + +  +G +++RK P  ++ K+E        RTV VE LP N +H  
Sbjct: 87  GKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDE------DERTVYVELLPKNVNHSW 146

Query: 223 LEKIFSVIGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLND 281
           +E++F   G+V  + I H   +             K  A VE+ET E A +A E LN+
Sbjct: 147 IERVFGKCGNVVYISIPHYKSTG----------DPKGFAFVEFETKEQAAKAIEFLNN 188

[Close]

BLAST of Carg24044 vs. ExPASy TrEMBL
Match: A0A6J1G8M9 (la-related protein 6C-like OS=Cucurbita moschata OX=3662 GN=LOC111451873 PE=4 SV=1)

HSP 1 Score: 812.0 bits (2096), Expect = 1.2e-231
Identity = 415/421 (98.57%), Postives = 415/421 (98.57%), Query Frame = 0


Query: 1   MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT 60
           MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT
Sbjct: 1   MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT 60

Query: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY 120
           GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY
Sbjct: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY 120

Query: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180
           QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA
Sbjct: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180

Query: 181 DGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240
           DGKKVKRKHPFTDKDKEELL     SRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH
Sbjct: 181 DGKKVKRKHPFTDKDKEELL-----SRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240

Query: 241 PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300
           PPESNPCCSKGELFISNKLHALVEYE AELAERAAEKLNDERNWRKGLRVRLLLRRSPKS
Sbjct: 241 PPESNPCCSKGELFISNKLHALVEYEIAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300

Query: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360
           VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG
Sbjct: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360

Query: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 420
           RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV
Sbjct: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 416

Query: 421 F 422
           F
Sbjct: 421 F 416

[Close]

BLAST of Carg24044 vs. ExPASy TrEMBL
Match: A0A6J1L529 (la-related protein 6C-like OS=Cucurbita maxima OX=3661 GN=LOC111499964 PE=4 SV=1)

HSP 1 Score: 808.1 bits (2086), Expect = 1.7e-230
Identity = 412/421 (97.86%), Postives = 415/421 (98.57%), Query Frame = 0


Query: 1   MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT 60
           MAE+NPEKKVN NPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPV+
Sbjct: 1   MAEANPEKKVNSNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVS 60

Query: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY 120
           GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKL+KQVEY
Sbjct: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLIKQVEY 120

Query: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180
           QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA
Sbjct: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180

Query: 181 DGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240
           DGKKVKRKHPFTDKDKEELL     SRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH
Sbjct: 181 DGKKVKRKHPFTDKDKEELL-----SRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240

Query: 241 PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300
           PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS
Sbjct: 241 PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300

Query: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360
           VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG
Sbjct: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360

Query: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 420
           RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV
Sbjct: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 416

Query: 421 F 422
           F
Sbjct: 421 F 416

[Close]

BLAST of Carg24044 vs. ExPASy TrEMBL
Match: A0A6J1L340 (la-related protein 6C OS=Cucurbita maxima OX=3661 GN=LOC111499965 PE=4 SV=1)

HSP 1 Score: 732.3 bits (1889), Expect = 1.2e-207
Identity = 378/421 (89.79%), Postives = 396/421 (94.06%), Query Frame = 0


Query: 1   MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT 60
           MAE+N E+KVN NPEME VK+AVNGD GVGSS SNG+LSFKFNAQAPEFFPRSQTQMPVT
Sbjct: 1   MAEANSEEKVNENPEME-VKEAVNGD-GVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVT 60

Query: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY 120
           GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKN RS+DI QK+VKQVEY
Sbjct: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEY 120

Query: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180
           QFSDMSLLANESLAK+ISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA
Sbjct: 121 QFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180

Query: 181 DGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240
           DGKKVKRKHPFTDKDKEELL     SRTVVVENLPDNHSHHNLEKIFSVIGSVKT+RICH
Sbjct: 181 DGKKVKRKHPFTDKDKEELL-----SRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICH 240

Query: 241 PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300
           PPESNPCCSKGELFISNKLHALVEYET ELA+RAAEKLNDERNWRKGLRVRLLLRRSPKS
Sbjct: 241 PPESNPCCSKGELFISNKLHALVEYETVELADRAAEKLNDERNWRKGLRVRLLLRRSPKS 300

Query: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360
           VLKTRKS+F+ ILDEDDSPS VS EQES   NI ELI D SSEENSTS+KKGWGRGRGKG
Sbjct: 301 VLKTRKSEFESILDEDDSPSPVSIEQESPQSNIAELITDFSSEENSTSSKKGWGRGRGKG 360

Query: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 420
           RGR+H+HLDRS SLPV AMQSSSQ++CEASSKLT+KSPRMPDGTKGFTMGRGKPL+SK V
Sbjct: 361 RGRVHNHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSV 414

Query: 421 F 422
           F
Sbjct: 421 F 414

[Close]

BLAST of Carg24044 vs. ExPASy TrEMBL
Match: A0A6J1G8K6 (la-related protein 6C OS=Cucurbita moschata OX=3662 GN=LOC111451813 PE=4 SV=1)

HSP 1 Score: 730.3 bits (1884), Expect = 4.5e-207
Identity = 377/421 (89.55%), Postives = 395/421 (93.82%), Query Frame = 0


Query: 1   MAESNPEKKVNPNPEMEVVKQAVNGDAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQMPVT 60
           MAE+N E+KVN NPEM+ VK+AVNGD GVGSS SNG+LSFKFNAQAPEFFPRSQTQMPVT
Sbjct: 1   MAEANSEEKVNENPEMD-VKEAVNGD-GVGSSNSNGNLSFKFNAQAPEFFPRSQTQMPVT 60

Query: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQVEY 120
           GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKN RS+DI QK+VKQVEY
Sbjct: 61  GYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQVEY 120

Query: 121 QFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180
           QFSDMSLLANESLAK+ISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA
Sbjct: 121 QFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVVSA 180

Query: 181 DGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICH 240
           DGKKVKRKHPFTDKDKEELL     SRTVVVENLPDNHSHHNLEKIFSVIGSVKT+RICH
Sbjct: 181 DGKKVKRKHPFTDKDKEELL-----SRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICH 240

Query: 241 PPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300
           PPESNPCCSKGELFISNKLHALVEYET ELAERAAEKLNDERNWRKGLRVRLLLRRSPKS
Sbjct: 241 PPESNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKS 300

Query: 301 VLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKG 360
           VLKTRKS+F+ ILDEDDSPS VS EQES   NI EL  D SSEENSTS+KKGWGRGRGKG
Sbjct: 301 VLKTRKSEFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKG 360

Query: 361 RGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 420
           RGR+H+HLDRS SLPV AMQSSSQ++CEASSKLT+KSPRMPDGTKGFTMGRGKPL+SK V
Sbjct: 361 RGRVHNHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSV 414

Query: 421 F 422
           F
Sbjct: 421 F 414

[Close]

BLAST of Carg24044 vs. ExPASy TrEMBL
Match: A0A6J1D5P1 (la-related protein 6C OS=Momordica charantia OX=3673 GN=LOC111017163 PE=4 SV=1)

HSP 1 Score: 698.0 bits (1800), Expect = 2.5e-197
Identity = 365/426 (85.68%), Postives = 388/426 (91.08%), Query Frame = 0


Query: 1   MAESNPEKKVNPNPEMEVVKQAVNGDA-----GVGSSTSNGDLSFKFNAQAPEFFPRSQT 60
           MA++N E+KV+  PEME  K+AVNG+      G G S S+G+L FKFNAQAPEFFPRSQT
Sbjct: 1   MAQANSEEKVSETPEME-TKEAVNGNGNGDGDGDGGSNSSGNLPFKFNAQAPEFFPRSQT 60

Query: 61  QMPVTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLV 120
           Q+PVTGYFHPYFHFLGGAPATSDWFFIGDQEP YLIPN TIPLPNFSKN RSDDI QK+V
Sbjct: 61  QVPVTGYFHPYFHFLGGAPATSDWFFIGDQEPAYLIPNATIPLPNFSKNVRSDDIQQKIV 120

Query: 121 KQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSK 180
           KQVEYQFSDMSLLANESLAK ISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSS+
Sbjct: 121 KQVEYQFSDMSLLANESLAKHISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSR 180

Query: 181 LVVSADGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIFSVIGSVKT 240
           LVVS+DGKKV+RKHPFTDKDKEELL     SRTVVVENLPDNHSHHNLEKIFSVIGSVKT
Sbjct: 181 LVVSSDGKKVRRKHPFTDKDKEELL-----SRTVVVENLPDNHSHHNLEKIFSVIGSVKT 240

Query: 241 VRICHPPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLR 300
           +RICHPPESNPCCSKGELFISNKLHALVEYET ELAERAAEKLNDERNWRKGLRVRLLLR
Sbjct: 241 IRICHPPESNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLR 300

Query: 301 RSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGR 360
           RSPKSVLKTRKS+FD ILDEDDSPS VS E E SL NITELI DC+SEENST++KKGWGR
Sbjct: 301 RSPKSVLKTRKSEFDSILDEDDSPSPVSIE-EPSLSNITELIVDCNSEENSTASKKGWGR 360

Query: 361 GRGKGRGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPL 420
           GRGKGRGRIHSH DR  S+PV  +Q+SSQVVCEAS+KLT+KSPRMPDGTKGFTMGRGKPL
Sbjct: 361 GRGKGRGRIHSHSDR--SVPVTQVQASSQVVCEASTKLTSKSPRMPDGTKGFTMGRGKPL 417

Query: 421 SSKPVF 422
           SSKPVF
Sbjct: 421 SSKPVF 417

[Close]

BLAST of Carg24044 vs. TAIR 10
Match: AT3G19090.1 (RNA-binding protein )

HSP 1 Score: 377.9 bits (969), Expect = 1.1e-104
Identity = 227/443 (51.24%), Postives = 281/443 (63.43%), Query Frame = 0


Query: 26  DAGVGSSTSNGDLSFKFNAQAPEFFPRSQTQ------MPVTGYFHPYFHFLGG------- 85
           D G GSS +    +FKFNAQAPEF PRS T        PV+GYF+P FH+ GG       
Sbjct: 20  DGGGGSSGAQA-TAFKFNAQAPEFVPRSHTTAPAPQVSPVSGYFYPCFHYNGGCIGGCGG 79

Query: 86  ----------APATSDWFFIGDQEPT------------YLIPNPTIPLP------NFSKN 145
                        +SDW ++G  +PT            + I NP +  P      + SKN
Sbjct: 80  GVCGGGGTGVGTQSSDWIYVGGGDPTAQHQHVHDPAAAFYISNPAVQFPASQNSSSSSKN 139

Query: 146 PRSDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNN 205
             SDD+  K+VKQVEYQF+DMSLLANES++K ISKDP+GYVP+S I+STKK+K+L++N++
Sbjct: 140 LLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHH 199

Query: 206 LIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLE 265
           L+  ALRSSSKLVVS DGKKVKR   FTD+D+EEL       RTVV ENLPD+HS+ NLE
Sbjct: 200 LVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQ-----GRTVVAENLPDDHSYQNLE 259

Query: 266 KIFSVIGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNW 325
           KIF V+G+VK +RICHPPESN    KG+  +SNK+HAL+EY+   +A++A EKLNDERNW
Sbjct: 260 KIFGVVGNVKAIRICHPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNW 319

Query: 326 RKGLRVRLLLRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEE 385
           RKGLRVRLLLR SPKSVLK R+ +FD IL +D+ PS  S E    L ++TE   D   ++
Sbjct: 320 RKGLRVRLLLRCSPKSVLKNRR-NFDGILIDDELPSYESGEDSPRL-HLTESQLDNDGDD 379

Query: 386 NSTSAKKGWGRGRGKGRGR-------------IHSHLDRSCSLPVAAMQSSSQVVCEASS 415
           N+      WG+GRGKGRGR                 L  S  +P      SS      S 
Sbjct: 380 NNVGGL--WGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHESS------SP 439

[Close]

BLAST of Carg24044 vs. TAIR 10
Match: AT2G43970.1 (RNA-binding protein )

HSP 1 Score: 210.3 bits (534), Expect = 3.0e-54
Identity = 139/366 (37.98%), Postives = 196/366 (53.55%), Query Frame = 0


Query: 102 SKNPRSDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLST 161
           SK    +D  QK+V QVEY FSD++L   + L + I KDP+GYVPI V++S KK+K++  
Sbjct: 185 SKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVIN 244

Query: 162 NNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHH 221
           NN+ +   L++S+KL VS DGKKV+R  P T+   EEL      SR +V ENLP++H + 
Sbjct: 245 NNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQ-----SRIIVAENLPEDHCYQ 304

Query: 222 NLEKIFSVIGSVKTVRICH--------PPESNPCCSKGELFISNKLHALVEYETAELAER 281
           NL KIFS +GSVK +R C         PP +           SNK+HA VEYE  ELAER
Sbjct: 305 NLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAER 364

Query: 282 AAEKLNDERNWRKGLRVRLLLR---RSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSL 341
           A  +L++  NWR GL+VRL+L+   + PK      +   D  ++ ++  +T S +Q    
Sbjct: 365 AVTELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQP--- 424

Query: 342 PNITELINDCSSE----------------ENSTSAKKGWGRGRGKGRGRIHSHLDRSCSL 401
             I +  +DCS E                E +   +KG  RGRGKGRGR   H +++ + 
Sbjct: 425 --IEKQSDDCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNN 484

Query: 402 PVAAMQSSS-------------QVVCEASS------------KLTTKSPRMPDGTKGFTM 416
             +  Q+ +             QV  + S+            K     PRMPDGT+GF+M
Sbjct: 485 NHSHNQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSM 540

[Close]

BLAST of Carg24044 vs. TAIR 10
Match: AT2G43970.2 (RNA-binding protein )

HSP 1 Score: 179.1 bits (453), Expect = 7.4e-45
Identity = 126/358 (35.20%), Postives = 182/358 (50.84%), Query Frame = 0


Query: 102 SKNPRSDDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLST 161
           SK    +D  QK+V QVEY FSD++L   + L + I KDP+GYVPI V++S KK+K++  
Sbjct: 185 SKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVIN 244

Query: 162 NNNLIVQALRSSSKLVVSADGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHH 221
           NN+ +   L++S+KL VS DGKKV+R  P T+   EEL      SR +V ENLP++H + 
Sbjct: 245 NNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQ-----SRIIVAENLPEDHCYQ 304

Query: 222 NLEKIFSVIGSVKTVRICHPPESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDE 281
           NL KIFS +GSVK +R C P  +           +     L   +  EL+E         
Sbjct: 305 NLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVTELSEAG------- 364

Query: 282 RNWRKGLRVRLLLR---RSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELIN 341
            NWR GL+VRL+L+   + PK      +   D  ++ ++  +T S +Q      I +  +
Sbjct: 365 -NWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQP-----IEKQSD 424

Query: 342 DCSSE----------------ENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPVAAMQSS 401
           DCS E                E +   +KG  RGRGKGRGR   H +++ +   +  Q+ 
Sbjct: 425 DCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNH 484

Query: 402 S-------------QVVCEASS------------KLTTKSPRMPDGTKGFTMGRGKPL 416
           +             QV  + S+            K     PRMPDGT+GF+MGRGKP+
Sbjct: 485 NHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGKPV 524

[Close]

BLAST of Carg24044 vs. TAIR 10
Match: AT5G46250.1 (RNA-binding protein )

HSP 1 Score: 178.7 bits (452), Expect = 9.7e-45
Identity = 120/318 (37.74%), Postives = 173/318 (54.40%), Query Frame = 0


Query: 108 DDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIV 167
           D+++QK+++QVEY FSD +L  ++ L  ++ ++  G+VPIS I++  K+K L+ ++ LIV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 168 QALRSSSKLVVSADGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIF 227
            AL+ SS LVVSAD KKVKR  P  +       +R     TV+VENLP++HS+ N+ +IF
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPE-------IRDPKIFTVLVENLPEDHSNENIREIF 220

Query: 228 SVIGSVKTVRICHP--PESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWR 287
              GS+K+V IC P   E +    K E FI  +LHA VEYET E AE+AA  LN+E++WR
Sbjct: 221 GKAGSIKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWR 280

Query: 288 KGLRVRLL--------LRRSPKSVLKTRKSDFDCILDEDDSPSTVSTEQESSLPNITELI 347
            GLRV+LL         RR  +  +   K     + D+        T +  +   +    
Sbjct: 281 NGLRVKLLEQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQN-HRLHHSD 340

Query: 348 NDCSSEENSTSAKKGWGRGRGKGRGRIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKS 407
           N    +  +    K   +GR  G+GR  +H   +      A  SS               
Sbjct: 341 NPADDDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPG 400

Query: 408 PRMPDGTKGFTMGRGKPL 416
           PRMPDGT+GFTMGRGK +
Sbjct: 401 PRMPDGTRGFTMGRGKAI 410

[Close]

BLAST of Carg24044 vs. TAIR 10
Match: AT5G46250.2 (RNA-binding protein )

HSP 1 Score: 158.7 bits (400), Expect = 1.0e-38
Identity = 90/194 (46.39%), Postives = 130/194 (67.01%), Query Frame = 0


Query: 108 DDIHQKLVKQVEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIV 167
           D+++QK+++QVEY FSD +L  ++ L  ++ ++  G+VPIS I++  K+K L+ ++ LIV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 168 QALRSSSKLVVSADGKKVKRKHPFTDKDKEELLVRSTISRTVVVENLPDNHSHHNLEKIF 227
            AL+ SS LVVSAD KKVKR  P  +       +R     TV+VENLP++HS+ N+ +IF
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPE-------IRDPKIFTVLVENLPEDHSNENIREIF 220

Query: 228 SVIGSVKTVRICHP--PESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWR 287
              GS+K+V IC P   E +    K E FI  +LHA VEYET E AE+AA  LN+E++WR
Sbjct: 221 GKAGSIKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWR 280

Query: 288 KGLRVRLLLRRSPK 300
            GLRV+LL + + K
Sbjct: 281 NGLRVKLLEQAAGK 287

The following BLAST results are available for this feature:

BLAST of Carg24044 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035140.1	1.5e-236	100.00	La-related protein 6C [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6605146.1	4.9e-232	98.81	La-related protein 6C, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022948237.1	2.4e-231	98.57	la-related protein 6C-like [Cucurbita moschata]	[more]
XP_023007489.1	3.5e-230	97.86	la-related protein 6C-like [Cucurbita maxima]	[more]
XP_023532349.1	1.0e-229	97.86	la-related protein 6C-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg24044 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHL3	1.5e-103	51.24	La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1	[more]
O80567	4.2e-53	37.98	La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2	[more]
Q94A38	1.4e-43	37.74	La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1	[more]
Q05CL8	4.4e-18	34.83	La-related protein 7 OS=Mus musculus OX=10090 GN=Larp7 PE=1 SV=2	[more]
Q4G0J3	5.8e-18	34.83	La-related protein 7 OS=Homo sapiens OX=9606 GN=LARP7 PE=1 SV=1	[more]

BLAST of Carg24044 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8M9	1.2e-231	98.57	la-related protein 6C-like OS=Cucurbita moschata OX=3662 GN=LOC111451873 PE=4 SV...	[more]
A0A6J1L529	1.7e-230	97.86	la-related protein 6C-like OS=Cucurbita maxima OX=3661 GN=LOC111499964 PE=4 SV=1	[more]
A0A6J1L340	1.2e-207	89.79	la-related protein 6C OS=Cucurbita maxima OX=3661 GN=LOC111499965 PE=4 SV=1	[more]
A0A6J1G8K6	4.5e-207	89.55	la-related protein 6C OS=Cucurbita moschata OX=3662 GN=LOC111451813 PE=4 SV=1	[more]
A0A6J1D5P1	2.5e-197	85.68	la-related protein 6C OS=Momordica charantia OX=3673 GN=LOC111017163 PE=4 SV=1	[more]

BLAST of Carg24044 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19090.1	1.1e-104	51.24	RNA-binding protein	[more]
AT2G43970.1	3.0e-54	37.98	RNA-binding protein	[more]
AT2G43970.2	7.4e-45	35.20	RNA-binding protein	[more]
AT5G46250.1	9.7e-45	37.74	RNA-binding protein	[more]
AT5G46250.2	1.0e-38	46.39	RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 208..291 e-value: 0.0017 score: 27.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 209..280 e-value: 1.3E-6 score: 28.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 207..297 score: 10.803629
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 108..188 e-value: 1.2E-35 score: 134.4
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 114..171 e-value: 1.0E-15 score: 57.5
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 104..195 score: 23.606537
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 201..300 e-value: 2.4E-12 score: 48.9
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 106..195 e-value: 3.2E-24 score: 86.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 389..421
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 340..362
None	No IPR available	PANTHER	PTHR22792:SF62	LA-RELATED PROTEIN 6C	coord: 22..416
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 22..416
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 196..300
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 106..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24044-RA	Carg24044-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005844	polysome
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding