Carg24039 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg24039
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	binding partner of ACD11 1-like
Location	Carg_Chr02: 2176962 .. 2178801 (+)
RNA-Seq Expression	Carg24039
Synteny	Carg24039

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCTAAACAACCGCCAAGCCACAACGCACCTCTCAAGGTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAGAACTTGGATTTGGAACTTCTCCGGTGGATCAGACGGAGCAGCATGGCGGTTGGTGTTCAATTTTTCCTTATTTTTCTGTTCATTTTGTTCCTAATCTTGTTTGATTTCTCGCGATGTTATTACCTCAAGTTTCATTTTGTTCTGAGGCGTGATTTTTTCTTCTTATTAACTACTTAATATAGGTGAAACAGCATGTTTCATTGTTTTTTCCTTCCGTAATTTTGATGAACAAATGCGTGACTCGTACTCAGGAGATGGAGAATGCGTACTTCCGTTGTAATTATGGCTTAGTATTGGAATTTAATGTTTCGAACAAGATATAAGGAAATTATTGAAAGCACCGAAAACGTCGAAATTCGTCTCTGATTTTCCAGAAACTGACTTGATTTTGGTTGTTTTTTTGTTTAATCGTTACAGTCGCAGGTGAGAACGGTGAGAGTTACCAATCTCTCGTTGAGCGCGTCGGAGAAAGATTTGAGAGACTTTTTTTCTTTTTCCGGTGAAATTGAAATTGTCGAAATGCGAAAGTGAGTGTTATTTACTACTTCTCGAAATTGTATTTTAGTTCGATAGGGATATGGTGATTAGCAGTAGGATTGTTACTTTTTTCTTCTTGATCAACTGTTAGTTCGTATGCGTTTTCATTTACTTCATTTTGTTTTCCTGTAGGGACAATGAACGATCTCAAATTGCATTTGTTACCTTCAAGGATCCGAAAGGAGCCGAGACATCGATTCTACTCTCAGTTGATACAATTCTCCCTTTCTTCATTTCAATTGTCCTTAAACTTAAGATATTCTGAATGATTTCATTCAAATATTTGCTTATTTACTTAAGCTTCCATTAGAAACTGTTTCTGGAATGTAGAACCTCTCTTATGTTATGAAAATGGCTCTAAGGTTTGAAAACTACTTAGAACAGAGTTTCATTCTTCAGATAGAAGAGGTTTAACAGAGGTCTCATCCATTTATTCCTGTAACATGGGAGAATGTCTTCAATATGATTGCCATGATGTGTTCAAAATGCATAGTTAACTTGATTTCTATGTCTCATTACCAAGTGATTGTTTCTTGTTTCATCTGTTTTCTTACCTGATTAAACTATCTTTTGCGTTACTCAGGGAGCTACAATTGTTGATCAGCCTGTTAGCATTGCTTCTGCTCCAGATTACAGTCTTCCTGCTGTACCTGCCACTGCCCCTCTACCAGTGTCTTCTCCAGTATTTTCTTGATCTTAATCCTACAGTAATTTTCAATCTTGTCTTTCCAACTTCTGACATGAATGAACAAACATGTTTCACCAGTCTGCAGAGAATGCAGACTCTGGTACTGCTGGATCTGCAATGAATAAGGCCGAGGATGTTGTGAGCAGCATGCTGGCCAAAGGCTTCACTTTGGGCAAAGATGCCCTCAATAGGGCAAAGTCTTTTGACCAGAAGCACCAATTGACATCAACAGCCTCATCAAAAGTCCTTTCTCTGGACCAAAAGATTGGCCTTAGCGAGAAGATTAGTGTTGGCACGACAGTGGTGAATGAGAAAGTGAAAGAAATGGATGAGAAGTTTCAAGTGTCTGAGAAAACCAAGGCAGCAGTGAACAATGCAGGAACAGCCTTAATGGCTAACCGGTACGTCTCAACCGGGGCTTCCTGGGTTACGCAGACGTTTCAAAGAGTCGCAAAAGCGGCCGTAGAAGTCAGTCACAAAACAAAGGAGAAGGTTTTAGCTGAGGATCAAGCGAAACAAGAGGGAAGATCTTGA

mRNA sequence

AACCTAAACAACCGCCAAGCCACAACGCACCTCTCAAGGTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAGAACTTGGATTTGGAACTTCTCCGGTGGATCAGACGGAGCAGCATGGCGTCGCAGGTGAGAACGGTGAGAGTTACCAATCTCTCGTTGAGCGCGTCGGAGAAAGATTTGAGAGACTTTTTTTCTTTTTCCGGTGAAATTGAAATTGTCGAAATGCGAAAGGACAATGAACGATCTCAAATTGCATTTGTTACCTTCAAGGATCCGAAAGGAGCCGAGACATCGATTCTACTCTCAGTTGATACAATTCTCCCTTTCTTCATTTCAATTGGAGCTACAATTGTTGATCAGCCTGTTAGCATTGCTTCTGCTCCAGATTACAGTCTTCCTGCTGTACCTGCCACTGCCCCTCTACCAGTGTCTTCTCCATCTGCAGAGAATGCAGACTCTGGTACTGCTGGATCTGCAATGAATAAGGCCGAGGATGTTGTGAGCAGCATGCTGGCCAAAGGCTTCACTTTGGGCAAAGATGCCCTCAATAGGGCAAAGTCTTTTGACCAGAAGCACCAATTGACATCAACAGCCTCATCAAAAGTCCTTTCTCTGGACCAAAAGATTGGCCTTAGCGAGAAGATTAGTGTTGGCACGACAGTGGTGAATGAGAAAGTGAAAGAAATGGATGAGAAGTTTCAAGTGTCTGAGAAAACCAAGGCAGCAGTGAACAATGCAGGAACAGCCTTAATGGCTAACCGGTACGTCTCAACCGGGGCTTCCTGGGTTACGCAGACGTTTCAAAGAGTCGCAAAAGCGGCCGTAGAAGTCAGTCACAAAACAAAGGAGAAGGTTTTAGCTGAGGATCAAGCGAAACAAGAGGGAAGATCTTGA

Coding sequence (CDS)

ATGGCGTCGCAGGTGAGAACGGTGAGAGTTACCAATCTCTCGTTGAGCGCGTCGGAGAAAGATTTGAGAGACTTTTTTTCTTTTTCCGGTGAAATTGAAATTGTCGAAATGCGAAAGGACAATGAACGATCTCAAATTGCATTTGTTACCTTCAAGGATCCGAAAGGAGCCGAGACATCGATTCTACTCTCAGTTGATACAATTCTCCCTTTCTTCATTTCAATTGGAGCTACAATTGTTGATCAGCCTGTTAGCATTGCTTCTGCTCCAGATTACAGTCTTCCTGCTGTACCTGCCACTGCCCCTCTACCAGTGTCTTCTCCATCTGCAGAGAATGCAGACTCTGGTACTGCTGGATCTGCAATGAATAAGGCCGAGGATGTTGTGAGCAGCATGCTGGCCAAAGGCTTCACTTTGGGCAAAGATGCCCTCAATAGGGCAAAGTCTTTTGACCAGAAGCACCAATTGACATCAACAGCCTCATCAAAAGTCCTTTCTCTGGACCAAAAGATTGGCCTTAGCGAGAAGATTAGTGTTGGCACGACAGTGGTGAATGAGAAAGTGAAAGAAATGGATGAGAAGTTTCAAGTGTCTGAGAAAACCAAGGCAGCAGTGAACAATGCAGGAACAGCCTTAATGGCTAACCGGTACGTCTCAACCGGGGCTTCCTGGGTTACGCAGACGTTTCAAAGAGTCGCAAAAGCGGCCGTAGAAGTCAGTCACAAAACAAAGGAGAAGGTTTTAGCTGAGGATCAAGCGAAACAAGAGGGAAGATCTTGA

Protein sequence

MASQVRTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETSILLSVDTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGSAMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEKVLAEDQAKQEGRS

Homology

[Close]

BLAST of Carg24039 vs. NCBI nr
Match: KAG7035145.1 (Binding partner of ACD11 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 469.2 bits (1206), Expect = 2.4e-128
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MASQVRTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETS 60
           MASQVRTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETS
Sbjct: 1   MASQVRTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETS 60

Query: 61  ILLSVDTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGS 120
           ILLSVDTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGS
Sbjct: 61  ILLSVDTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGS 120

Query: 121 AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 180
           AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG
Sbjct: 121 AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 180

Query: 181 TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS 240
           TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS
Sbjct: 181 TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS 240

Query: 241 HKTKEKVLAEDQAKQEGRS 260
           HKTKEKVLAEDQAKQEGRS
Sbjct: 241 HKTKEKVLAEDQAKQEGRS 259

[Close]

BLAST of Carg24039 vs. NCBI nr
Match: XP_022947210.1 (binding partner of ACD11 1-like [Cucurbita moschata] >KAG6605151.1 Binding partner of ACD11 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 435.6 bits (1119), Expect = 2.9e-118
Identity = 245/259 (94.59%), Postives = 247/259 (95.37%), Query Frame = 0


Query: 1   MASQVRTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETS 60
           MASQVRTVRVTN+SLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETS
Sbjct: 1   MASQVRTVRVTNVSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETS 60

Query: 61  ILLSVDTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGS 120
           ILLS           GATIVDQPVSIASAPDYSLPAVPA+APLPVSSPSAENA SGTAGS
Sbjct: 61  ILLS-----------GATIVDQPVSIASAPDYSLPAVPASAPLPVSSPSAENAGSGTAGS 120

Query: 121 AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 180
           AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG
Sbjct: 121 AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 180

Query: 181 TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS 240
           TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS
Sbjct: 181 TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS 240

Query: 241 HKTKEKVLAEDQAKQEGRS 260
           HKTKEKVLAEDQAKQEGRS
Sbjct: 241 HKTKEKVLAEDQAKQEGRS 248

[Close]

BLAST of Carg24039 vs. NCBI nr
Match: XP_023533747.1 (binding partner of ACD11 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 431.8 bits (1109), Expect = 4.2e-117
Identity = 243/259 (93.82%), Postives = 245/259 (94.59%), Query Frame = 0


Query: 1   MASQVRTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETS 60
           MASQVRTVRVTN+SLSASEKDLRDFFSFSGEIE VEMRKDNERSQIAFVTFKDPKGAETS
Sbjct: 1   MASQVRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDPKGAETS 60

Query: 61  ILLSVDTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGS 120
           ILLS           GATIVDQPVSIASAPDYSLPAVPA+APLPVSSPSAENA SGTAGS
Sbjct: 61  ILLS-----------GATIVDQPVSIASAPDYSLPAVPASAPLPVSSPSAENAGSGTAGS 120

Query: 121 AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 180
           AM KAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG
Sbjct: 121 AMQKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 180

Query: 181 TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS 240
           TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS
Sbjct: 181 TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS 240

Query: 241 HKTKEKVLAEDQAKQEGRS 260
           HKTKEKVLAEDQAKQEGRS
Sbjct: 241 HKTKEKVLAEDQAKQEGRS 248

[Close]

BLAST of Carg24039 vs. NCBI nr
Match: XP_023007523.1 (binding partner of ACD11 1-like [Cucurbita maxima])

HSP 1 Score: 424.9 bits (1091), Expect = 5.1e-115
Identity = 239/259 (92.28%), Postives = 243/259 (93.82%), Query Frame = 0


Query: 1   MASQVRTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETS 60
           MASQVRTVRVTN+SLSASEKDLRDFFSFSGEIE VEMRKDNERSQIAFVTFKD KGAETS
Sbjct: 1   MASQVRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETS 60

Query: 61  ILLSVDTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGS 120
           ILLS           GATIVDQPVSIA+APDY+LPAVPA+APLPVSSPSAENA SGTAGS
Sbjct: 61  ILLS-----------GATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGS 120

Query: 121 AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 180
           AM KAEDVVSSMLAKGFTLGKD LNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG
Sbjct: 121 AMQKAEDVVSSMLAKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 180

Query: 181 TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS 240
           TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS
Sbjct: 181 TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS 240

Query: 241 HKTKEKVLAEDQAKQEGRS 260
           HKTKEKVLAEDQAKQEGRS
Sbjct: 241 HKTKEKVLAEDQAKQEGRS 248

[Close]

BLAST of Carg24039 vs. NCBI nr
Match: XP_038900618.1 (binding partner of ACD11 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 367.1 bits (941), Expect = 1.3e-97
Identity = 208/259 (80.31%), Postives = 228/259 (88.03%), Query Frame = 0


Query: 5   VRTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETSILLS 64
           +RTVRVTN+SLS +EKDLRDFFSFSGEIE VEMRKD ERSQ+AFVTFKDPKGAETSILLS
Sbjct: 1   MRTVRVTNVSLSVTEKDLRDFFSFSGEIEFVEMRKDTERSQLAFVTFKDPKGAETSILLS 60

Query: 65  VDTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAP--LPVSSPSAENADSG--TAGS 124
                      GATIVDQPVSIASAPDY+LPAV A+AP  +PVS+P+ +N +SG  TAGS
Sbjct: 61  -----------GATIVDQPVSIASAPDYNLPAVNASAPVAMPVSTPATDNTNSGTSTAGS 120

Query: 125 AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 184
           AM KAEDVVSSMLAKGFTLGKDALN+AKSFD++HQLTSTASSKV SLDQKIGLSEKISVG
Sbjct: 121 AMQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVG 180

Query: 185 TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS 244
           TTVVNEKV+EMDEKFQVSEKTKAAV+NAG+A+M NRYV TGASWV+QTFQRVAKAAV+VS
Sbjct: 181 TTVVNEKVREMDEKFQVSEKTKAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVS 240

Query: 245 HKTKEKVLAEDQAKQEGRS 260
            KTKEKVL EDQ K  G S
Sbjct: 241 QKTKEKVLVEDQGKHVGNS 248

[Close]

BLAST of Carg24039 vs. ExPASy Swiss-Prot
Match: Q9LFD5 (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 6.0e-58
Identity = 140/261 (53.64%), Postives = 184/261 (70.50%), Query Frame = 0


Query: 1   MASQVRTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETS 60
           MASQVR+V+V NLS  A+E D+++FFSFSGE+E +++ + NE S  A+VTFK+ +GAET+
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDI-QSNEHS--AYVTFKETQGAETA 60

Query: 61  ILLSVDTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGS 120
           +LLS           GA+I DQ V I  AP+YS PA          +P AE   SG A S
Sbjct: 61  VLLS-----------GASIADQSVIIELAPNYSPPA----------APHAETQSSG-AES 120

Query: 121 AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 180
            + KAEDVVSSMLAKGF LGKDA+ +AK+FD+KH  TSTA++ V SLDQKIGLS+K++ G
Sbjct: 121 VVQKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAG 180

Query: 181 TTVVNEKVKEMDEKFQVSEKTKA-------AVNNAGTALMANRYVSTGASWVTQTFQRVA 240
           T++VNEK+K +D+ FQV+E+TK+        V++AG+A+M NRYV TG SW    F RVA
Sbjct: 181 TSLVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVA 236

Query: 241 KAAVEVSHKTKEKVLAEDQAK 255
           +AA EV  KTKEKV AE  ++
Sbjct: 241 QAAGEVGQKTKEKVEAEQPSQ 236

[Close]

BLAST of Carg24039 vs. ExPASy Swiss-Prot
Match: P87216 (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vip1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.7e-04
Identity = 52/200 (26.00%), Postives = 84/200 (42.00%), Query Frame = 0


Query: 8   VRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETSILLSVDT 67
           V VTN+S   +EK + DFFSF G++  +   K  E +Q A + F+ P   +T++LL    
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGE-TQTAKIQFERPSATKTALLLQ--- 64

Query: 68  ILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGSAMNKAED 127
                    A +    + I S                    +A   D G AG      ++
Sbjct: 65  --------DALLGQNKIQITSE----------------DGGAASTTDQGGAGGDQAARQE 124

Query: 128 ------VVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGT 187
                 ++S +L++G+ L    L ++   DQ + ++S     + S      LS   SV  
Sbjct: 125 DKPRSAIISELLSRGYHLSDVTLEKSIQLDQSYGVSSKFKGILES-----ALSGVRSVNE 171

Query: 188 TV-VNEKVKEMDEKFQVSEK 201
              V EK  E+D KF +S+K
Sbjct: 185 RYHVTEKANEVDNKFAISDK 171

[Close]

BLAST of Carg24039 vs. ExPASy TrEMBL
Match: A0A6J1G681 (binding partner of ACD11 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451146 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.4e-118
Identity = 245/259 (94.59%), Postives = 247/259 (95.37%), Query Frame = 0


Query: 1   MASQVRTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETS 60
           MASQVRTVRVTN+SLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETS
Sbjct: 1   MASQVRTVRVTNVSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETS 60

Query: 61  ILLSVDTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGS 120
           ILLS           GATIVDQPVSIASAPDYSLPAVPA+APLPVSSPSAENA SGTAGS
Sbjct: 61  ILLS-----------GATIVDQPVSIASAPDYSLPAVPASAPLPVSSPSAENAGSGTAGS 120

Query: 121 AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 180
           AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG
Sbjct: 121 AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 180

Query: 181 TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS 240
           TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS
Sbjct: 181 TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS 240

Query: 241 HKTKEKVLAEDQAKQEGRS 260
           HKTKEKVLAEDQAKQEGRS
Sbjct: 241 HKTKEKVLAEDQAKQEGRS 248

[Close]

BLAST of Carg24039 vs. ExPASy TrEMBL
Match: A0A6J1L7W4 (binding partner of ACD11 1-like OS=Cucurbita maxima OX=3661 GN=LOC111499987 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.5e-115
Identity = 239/259 (92.28%), Postives = 243/259 (93.82%), Query Frame = 0


Query: 1   MASQVRTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETS 60
           MASQVRTVRVTN+SLSASEKDLRDFFSFSGEIE VEMRKDNERSQIAFVTFKD KGAETS
Sbjct: 1   MASQVRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETS 60

Query: 61  ILLSVDTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGS 120
           ILLS           GATIVDQPVSIA+APDY+LPAVPA+APLPVSSPSAENA SGTAGS
Sbjct: 61  ILLS-----------GATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGS 120

Query: 121 AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 180
           AM KAEDVVSSMLAKGFTLGKD LNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG
Sbjct: 121 AMQKAEDVVSSMLAKGFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 180

Query: 181 TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS 240
           TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS
Sbjct: 181 TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS 240

Query: 241 HKTKEKVLAEDQAKQEGRS 260
           HKTKEKVLAEDQAKQEGRS
Sbjct: 241 HKTKEKVLAEDQAKQEGRS 248

[Close]

BLAST of Carg24039 vs. ExPASy TrEMBL
Match: A0A5A7TN24 (Binding partner of ACD11 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00080 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.3e-95
Identity = 208/259 (80.31%), Postives = 227/259 (87.64%), Query Frame = 0


Query: 6   RTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETSILLSV 65
           RTVRVTN+SLSA+EKDLRDFFSFSGEIE VEMR DNERSQ+AFVTFKDPKGAETSILLS 
Sbjct: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDPKGAETSILLS- 63

Query: 66  DTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAP--LPVSSPSAENADS--GTAGSA 125
                     GATIVDQPVSI+SAPDY+LPAV A+AP  +PVS+P+ +N  S   TAGSA
Sbjct: 64  ----------GATIVDQPVSISSAPDYNLPAVDASAPVAVPVSTPAIDNTTSTTTTAGSA 123

Query: 126 MNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGT 185
           + K EDVVSSMLAKGFTLGKDALN+AKSFD++HQLTSTASSKV SLDQKIGLSEKISVGT
Sbjct: 124 IQKTEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGT 183

Query: 186 TVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSH 245
           TVVNEKV+EMDEKFQVSEKTKAAV+NAG+ALMANRYV TGASWV+QTFQRVAKAAV+VS 
Sbjct: 184 TVVNEKVREMDEKFQVSEKTKAAVSNAGSALMANRYVLTGASWVSQTFQRVAKAAVDVSQ 243

Query: 246 KTKEKVLA-EDQAKQEGRS 260
           KTKEKVLA EDQ K  G S
Sbjct: 244 KTKEKVLAEEDQGKHVGNS 251

[Close]

BLAST of Carg24039 vs. ExPASy TrEMBL
Match: A0A0A0LRG1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G437070 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 4.9e-95
Identity = 207/260 (79.62%), Postives = 226/260 (86.92%), Query Frame = 0


Query: 6   RTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETSILLSV 65
           RTVRVTN+SLSA+EKDLRDFFSFSGEIE VEMR DNERSQ+AFVTFKD KGAETSILLS 
Sbjct: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSILLS- 63

Query: 66  DTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAP--LPVSSPSAENADS---GTAGS 125
                     GATIVDQPVSI+SAPDY+LPAV A+AP  +PVS+P+ +N  S    TAGS
Sbjct: 64  ----------GATIVDQPVSISSAPDYNLPAVDASAPVAVPVSTPALDNTTSTTNSTAGS 123

Query: 126 AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 185
           AM KAEDVVSSMLAKGFTLGKDALN+AKSFD++HQLTSTASSKV SLDQKIGLSEKISVG
Sbjct: 124 AMQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVG 183

Query: 186 TTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVS 245
           TTVVNEKV+EMDEKFQVSEKTKAAV+NAG+A+M NRYV TGASWV+QTFQRVAKAAV+VS
Sbjct: 184 TTVVNEKVREMDEKFQVSEKTKAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVS 243

Query: 246 HKTKEKVLA-EDQAKQEGRS 260
            KTKEKVLA EDQ K  G S
Sbjct: 244 QKTKEKVLAEEDQGKHVGNS 252

[Close]

BLAST of Carg24039 vs. ExPASy TrEMBL
Match: A0A6J1JGG3 (binding partner of ACD11 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484286 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 3.5e-93
Identity = 199/262 (75.95%), Postives = 221/262 (84.35%), Query Frame = 0


Query: 5   VRTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETSILLS 64
           +RTVRVTN+SL A+EK+LR+FFSFSGEIE VEMRKDNE+ Q+AFVTFKDPKGAETSILLS
Sbjct: 3   MRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSILLS 62

Query: 65  VDTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAEN---------ADS 124
                      GATIVDQP+SI SAPDY+LPAV A+ P   S+P+AEN           +
Sbjct: 63  -----------GATIVDQPISIVSAPDYNLPAVAASDPPAASAPAAENTGAETAETAGTT 122

Query: 125 GTAGSAMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSE 184
           GT GSAM KAEDVVSSMLAKGF LGKDALNRAKSFD++HQLT TASSKV SLDQKIGLSE
Sbjct: 123 GTTGSAMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHQLTWTASSKVASLDQKIGLSE 182

Query: 185 KISVGTTVVNEKVKEMDEKFQVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKA 244
           KISVGTTVVNEKV+EMDEKFQVSEKTKAAVNNAG+A+M NRYVSTGASWV+QTFQRVAKA
Sbjct: 183 KISVGTTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKA 242

Query: 245 AVEVSHKTKEKVLAEDQAKQEG 258
           AV+VS KTKEK+LAEDQ  + G
Sbjct: 243 AVDVSQKTKEKMLAEDQQGKHG 253

[Close]

BLAST of Carg24039 vs. TAIR 10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 235.3 bits (599), Expect = 5.4e-62
Identity = 139/258 (53.88%), Postives = 185/258 (71.71%), Query Frame = 0


Query: 7   TVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETSILLSVD 66
           TV+V+N+SL A+++DL++FFSFSG+I  +E + + ER+++A+VTFKD +GAET++LLS  
Sbjct: 5   TVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLLS-- 64

Query: 67  TILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGSAMNKAE 126
                    GATIVD  V ++ APDY L    +   L    P   N       S + KAE
Sbjct: 65  ---------GATIVDSSVIVSMAPDYQL----SPEALASLEPKDSNKSPKAGDSVLRKAE 124

Query: 127 DVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNE 186
           DVVSSMLAKGF LGKDA+ +AKS D+KHQLTSTAS+KV S D+KIG ++KI+ GT VV E
Sbjct: 125 DVVSSMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGE 184

Query: 187 KVKEMDEKFQVSEKTKAA-------VNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEV 246
           KV+E+D+K+QVSEKTK+A       V+NAG+A+M NRYV TGA+WVT  F +VAKAA EV
Sbjct: 185 KVREVDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEV 244

Query: 247 SHKTKEKV-LAEDQAKQE 257
             K KEKV +AE++ K++
Sbjct: 245 GQKAKEKVGMAEEEDKRK 247

[Close]

BLAST of Carg24039 vs. TAIR 10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 232.3 bits (591), Expect = 4.5e-61
Identity = 133/258 (51.55%), Postives = 188/258 (72.87%), Query Frame = 0


Query: 7   TVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETSILLSVD 66
           TV+V+N+SL A+E+DL++FFSFSG+I  +E + +N+ S++A+VTFKD +GAET++LL+  
Sbjct: 5   TVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLT-- 64

Query: 67  TILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGSAMNKAE 126
                    G+TIVD  V++  +PDY LP     +   +   +  ++ +    S   KAE
Sbjct: 65  ---------GSTIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAE 124

Query: 127 DVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNE 186
           DVVS M++KGF LGKDA+ +AKS D+KHQLTSTAS++V S D++IG +EKI+ GTTVV+E
Sbjct: 125 DVVSGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSE 184

Query: 187 KVKEMDEKFQVSEKTKAA-------VNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEV 246
           KVKE+D+KFQV+EKTK+A       V+NAG+A+M NRYV TGA+WVT  F RV+KAA EV
Sbjct: 185 KVKEVDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEV 244

Query: 247 SHKTKEKV-LAEDQAKQE 257
             K KEKV LAE++ +++
Sbjct: 245 GQKAKEKVGLAEEEEEEK 251

[Close]

BLAST of Carg24039 vs. TAIR 10
Match: AT5G16840.2 (binding partner of acd11 1 )

HSP 1 Score: 229.9 bits (585), Expect = 2.3e-60
Identity = 140/261 (53.64%), Postives = 184/261 (70.50%), Query Frame = 0


Query: 1   MASQVRTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETS 60
           MASQVR+V+V NLS  A+E D+++FFSFSGE+E ++++  NE S  A+VTFK+ +GAET+
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETA 60

Query: 61  ILLSVDTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGS 120
           +LLS           GA+I DQ V I  AP+YS PA          +P AE   SG A S
Sbjct: 61  VLLS-----------GASIADQSVIIELAPNYSPPA----------APHAETQSSG-AES 120

Query: 121 AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 180
            + KAEDVVSSMLAKGF LGKDA+ +AK+FD+KH  TSTA++ V SLDQKIGLS+K++ G
Sbjct: 121 VVQKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAG 180

Query: 181 TTVVNEKVKEMDEKFQVSEKTKA-------AVNNAGTALMANRYVSTGASWVTQTFQRVA 240
           T++VNEK+K +D+ FQV+E+TK+        V++AG+A+M NRYV TG SW    F RVA
Sbjct: 181 TSLVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVA 237

Query: 241 KAAVEVSHKTKEKVLAEDQAK 255
           +AA EV  KTKEKV AE  ++
Sbjct: 241 QAAGEVGQKTKEKVEAEQPSQ 237

[Close]

BLAST of Carg24039 vs. TAIR 10
Match: AT5G16840.1 (binding partner of acd11 1 )

HSP 1 Score: 225.7 bits (574), Expect = 4.2e-59
Identity = 140/261 (53.64%), Postives = 184/261 (70.50%), Query Frame = 0


Query: 1   MASQVRTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETS 60
           MASQVR+V+V NLS  A+E D+++FFSFSGE+E +++ + NE S  A+VTFK+ +GAET+
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDI-QSNEHS--AYVTFKETQGAETA 60

Query: 61  ILLSVDTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGS 120
           +LLS           GA+I DQ V I  AP+YS PA          +P AE   SG A S
Sbjct: 61  VLLS-----------GASIADQSVIIELAPNYSPPA----------APHAETQSSG-AES 120

Query: 121 AMNKAEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVG 180
            + KAEDVVSSMLAKGF LGKDA+ +AK+FD+KH  TSTA++ V SLDQKIGLS+K++ G
Sbjct: 121 VVQKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAG 180

Query: 181 TTVVNEKVKEMDEKFQVSEKTKA-------AVNNAGTALMANRYVSTGASWVTQTFQRVA 240
           T++VNEK+K +D+ FQV+E+TK+        V++AG+A+M NRYV TG SW    F RVA
Sbjct: 181 TSLVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVA 236

Query: 241 KAAVEVSHKTKEKVLAEDQAK 255
           +AA EV  KTKEKV AE  ++
Sbjct: 241 QAAGEVGQKTKEKVEAEQPSQ 236

[Close]

BLAST of Carg24039 vs. TAIR 10
Match: AT5G16840.3 (binding partner of acd11 1 )

HSP 1 Score: 218.8 bits (556), Expect = 5.2e-57
Identity = 136/257 (52.92%), Postives = 180/257 (70.04%), Query Frame = 0


Query: 5   VRTVRVTNLSLSASEKDLRDFFSFSGEIEIVEMRKDNERSQIAFVTFKDPKGAETSILLS 64
           VR+V+V NLS  A+E D+++FFSFSGE+E +++ + NE S  A+VTFK+ +GAET++LLS
Sbjct: 3   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDI-QSNEHS--AYVTFKETQGAETAVLLS 62

Query: 65  VDTILPFFISIGATIVDQPVSIASAPDYSLPAVPATAPLPVSSPSAENADSGTAGSAMNK 124
                      GA+I DQ V I  AP+YS PA          +P AE   SG A S + K
Sbjct: 63  -----------GASIADQSVIIELAPNYSPPA----------APHAETQSSG-AESVVQK 122

Query: 125 AEDVVSSMLAKGFTLGKDALNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVV 184
           AEDVVSSMLAKGF LGKDA+ +AK+FD+KH  TSTA++ V SLDQKIGLS+K++ GT++V
Sbjct: 123 AEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLV 182

Query: 185 NEKVKEMDEKFQVSEKTKA-------AVNNAGTALMANRYVSTGASWVTQTFQRVAKAAV 244
           NEK+K +D+ FQV+E+TK+        V++AG+A+M NRYV TG SW    F RVA+AA 
Sbjct: 183 NEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAG 234

Query: 245 EVSHKTKEKVLAEDQAK 255
           EV  KTKEKV AE  ++
Sbjct: 243 EVGQKTKEKVEAEQPSQ 234

The following BLAST results are available for this feature:

BLAST of Carg24039 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035145.1	2.4e-128	100.00	Binding partner of ACD11 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022947210.1	2.9e-118	94.59	binding partner of ACD11 1-like [Cucurbita moschata] >KAG6605151.1 Binding partn...	[more]
XP_023533747.1	4.2e-117	93.82	binding partner of ACD11 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023007523.1	5.1e-115	92.28	binding partner of ACD11 1-like [Cucurbita maxima]	[more]
XP_038900618.1	1.3e-97	80.31	binding partner of ACD11 1-like isoform X2 [Benincasa hispida]	[more]

BLAST of Carg24039 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFD5	6.0e-58	53.64	Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1	[more]
P87216	1.7e-04	26.00	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN...	[more]

BLAST of Carg24039 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G681	1.4e-118	94.59	binding partner of ACD11 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451146 PE...	[more]
A0A6J1L7W4	2.5e-115	92.28	binding partner of ACD11 1-like OS=Cucurbita maxima OX=3661 GN=LOC111499987 PE=4...	[more]
A0A5A7TN24	1.3e-95	80.31	Binding partner of ACD11 1-like isoform X1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0LRG1	4.9e-95	79.62	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G437070 PE=4 SV...	[more]
A0A6J1JGG3	3.5e-93	75.95	binding partner of ACD11 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Carg24039 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17720.1	5.4e-62	53.88	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	4.5e-61	51.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	2.3e-60	53.64	binding partner of acd11 1	[more]
AT5G16840.1	4.2e-59	53.64	binding partner of acd11 1	[more]
AT5G16840.3	5.2e-57	52.92	binding partner of acd11 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 7..76 e-value: 1.6E-5 score: 34.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 8..59 e-value: 5.8E-9 score: 35.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 6..91 score: 11.537011
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..68 e-value: 5.6E-11 score: 44.2
None	No IPR available	PANTHER	PTHR32343:SF37	BINDING PARTNER OF ACD11 1	coord: 4..256
None	No IPR available	PANTHER	PTHR32343	SERINE/ARGININE-RICH SPLICING FACTOR	coord: 4..256
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24039-RA	Carg24039-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding